RLG00000001401

disease resistance protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
N/A
Physical Location & Seq
Forward (+)
15116284 .. 15116799
516 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001401

Sequence Viewer

Length: 516 bp
ATGTCAGCACTCGAGGATCTACTTCCATCTTTTATATCGAAATTAGGGAATGGCAAAATTTTGCGTACCCTGACAACTTTTGGTTCAAATATTACTGCCATAGAGTCGGATTTGATTTCACAGTTGAAACGTCTAAGGACTTTGAATTTGAGTGACAACAACATCCAGCAGTTGCCGGAGGAGATTGGTGATTTGATACATTTGAGATATCTTAATTTGTCTTATAATGATGATTTGAGGAGATTACCCGACAGCGTGTGTAATTTGTACAATTTGCAAACTTTGAGGCTTGATTACTGCCCCCTTGAAGAGTTGCCGGACAATATGGGGAAGTTGATTAACTTGAAGCACCATCATGTTGAGTATTGTTATTTGCTTCACTACTTACCAAAAGGGGTTAGGCGTATAAGGAATTTGCGAACACTAGACGGCAGTCCATATGTTTATTGTAGTGAAGATGCCGAAGCTATTGACATTAGGAGATCTGAGAATGATGAATCAGCTTCGCTGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

172

Amino Acids

19.68

Weight (kDa)

5.52

Isoelectric Point (pI)

68.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 21 - 147 2.2e-18 Leucine-rich repeat region
LRR_8 PF13855 28 - 77 3.9e-10 Leucine rich repeat
LRR_4 PF12799 43 - 78 1.5e-06 Leucine Rich repeats (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 225
AclWI GGATC 1 cut(s) 24
AcsI RAATTY 3 cut(s) 57, 145, 412
AfaI GTAC 2 cut(s) 67, 269
AgsI TTSAA 5 cut(s) 87, 127, 145, 308, 346
AluBI AGCT 2 cut(s) 467, 503
AluI AGCT 2 cut(s) 467, 503
AlwI GGATC 1 cut(s) 24
Ama87I CYCGRG 1 cut(s) 11
ApoI RAATTY 3 cut(s) 57, 145, 412
ArsI GACNNNNNNTTYG 2 cut(s) 130, 162
AsuHPI GGTGA 1 cut(s) 200
AvaI CYCGRG 1 cut(s) 11
BccI CCATC 2 cut(s) 34, 360
BceAI ACGGC 1 cut(s) 445
BfaI CTAG 1 cut(s) 425
BglII AGATCT 1 cut(s) 482
BmeT110I CYCGRG 1 cut(s) 11
BmsI GCATC 1 cut(s) 448
BoxI GACNNNNGTC 1 cut(s) 432
BseGI GGATG 1 cut(s) 162
BseMII CTCAG 1 cut(s) 477
BseRI GAGGAG 2 cut(s) 194, 253
BsiHKCI CYCGRG 1 cut(s) 11
BsiSI CCGG 2 cut(s) 176, 317
BsoBI CYCGRG 1 cut(s) 11
Bsp1407I TGTACA 1 cut(s) 267
Bsp143I GATC 2 cut(s) 16, 482
BspCNI CTCAG 1 cut(s) 478
BspPI GGATC 1 cut(s) 24
BsrGI TGTACA 1 cut(s) 267
BssMI GATC 2 cut(s) 16, 482
Bst4CI ACNGT 1 cut(s) 123
Bst6I CTCTTC 1 cut(s) 303
BstAUI TGTACA 1 cut(s) 267
BstDEI CTNAG 2 cut(s) 134, 486
BstF5I GGATG 1 cut(s) 162
BstKTI GATC 2 cut(s) 19, 485
BstMBI GATC 2 cut(s) 16, 482
BstPAI GACNNNNGTC 1 cut(s) 432
BstX2I RGATCY 2 cut(s) 16, 482
BstYI RGATCY 2 cut(s) 16, 482
BtsCI GGATG 1 cut(s) 162
Csp6I GTAC 2 cut(s) 66, 268
CviAII CATG 1 cut(s) 356
CviJI RGCY 3 cut(s) 289, 467, 503
CviKI_1 RGCY 3 cut(s) 289, 467, 503
CviQI GTAC 2 cut(s) 66, 268
DdeI CTNAG 2 cut(s) 134, 486
DpnI GATC 2 cut(s) 18, 484
DpnII GATC 2 cut(s) 16, 482
Eam1104I CTCTTC 1 cut(s) 303
EarI CTCTTC 1 cut(s) 303
Eco32I GATATC 1 cut(s) 209
Eco88I CYCGRG 1 cut(s) 11
EcoRV GATATC 1 cut(s) 209
FaeI CATG 1 cut(s) 359
FaiI YATR 8 cut(s) 35, 101, 225, 326, 357, 407, 439, 441
FatI CATG 1 cut(s) 355
FauNDI CATATG 1 cut(s) 439
FokI GGATG 1 cut(s) 149
FspBI CTAG 1 cut(s) 425
HapII CCGG 2 cut(s) 176, 317
Hin1II CATG 1 cut(s) 359
HinfI GANTC 2 cut(s) 104, 497
HpaII CCGG 2 cut(s) 176, 317
HphI GGTGA 1 cut(s) 200
Hpy188I TCNGA 2 cut(s) 109, 487
Hpy188III TCNNGA 1 cut(s) 513
HpyCH4III ACNGT 1 cut(s) 123
HpyCH4IV ACGT 1 cut(s) 130
HpyCH4V TGCA 1 cut(s) 277
HpyF3I CTNAG 2 cut(s) 134, 486
HpySE526I ACGT 1 cut(s) 130
Hsp92II CATG 1 cut(s) 359
Kzo9I GATC 2 cut(s) 16, 482
LpnPI CCDG 4 cut(s) 83, 179, 189, 330
LweI GCATC 1 cut(s) 448
MaeI CTAG 1 cut(s) 425
MaeII ACGT 1 cut(s) 130
MaeIII GTNAC 1 cut(s) 152
MalI GATC 2 cut(s) 18, 484
MboI GATC 2 cut(s) 16, 482
MboII GAAGA 2 cut(s) 320, 467
MflI RGATCY 2 cut(s) 16, 482
MluCI AATT 7 cut(s) 41, 57, 145, 214, 262, 271, 412
MlyI GAGTC 1 cut(s) 113
MmeI TCCRAC 1 cut(s) 87
MnlI CCTC 4 cut(s) 7, 172, 231, 279
MseI TTAA 2 cut(s) 213, 339
MslI CAYNNNNRTG 1 cut(s) 354
MspI CCGG 2 cut(s) 176, 317
NdeI CATATG 1 cut(s) 439
NdeII GATC 2 cut(s) 16, 482
NlaIII CATG 1 cut(s) 359
NmuCI GTSAC 1 cut(s) 152
PaeR7I CTCGAG 1 cut(s) 11
PfeI GAWTC 1 cut(s) 497
PleI GAGTC 1 cut(s) 112
PpsI GAGTC 1 cut(s) 112
PshAI GACNNNNGTC 1 cut(s) 432
PsiI TTATAA 1 cut(s) 225
PspXI VCTCGAGB 1 cut(s) 11
PsuI RGATCY 2 cut(s) 16, 482
RsaI GTAC 2 cut(s) 67, 269
RsaNI GTAC 2 cut(s) 66, 268
RseI CAYNNNNRTG 1 cut(s) 354
SaqAI TTAA 2 cut(s) 213, 339
Sau3AI GATC 2 cut(s) 16, 482
SchI GAGTC 1 cut(s) 113
SetI ASST 3 cut(s) 133, 469, 505
SfaNI GCATC 1 cut(s) 448
Sfr274I CTCGAG 1 cut(s) 11
SlaI CTCGAG 1 cut(s) 11
SmiMI CAYNNNNRTG 1 cut(s) 354
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
Sse9I AATT 7 cut(s) 41, 57, 145, 214, 262, 271, 412
SspI AATATT 1 cut(s) 91
SspMI CTAG 1 cut(s) 425
TaaI ACNGT 1 cut(s) 123
TaiI ACGT 1 cut(s) 133
TaqI TCGA 2 cut(s) 12, 38
TasI AATT 7 cut(s) 41, 57, 145, 214, 262, 271, 412
TatI WGTACW 1 cut(s) 267
TfiI GAWTC 1 cut(s) 497
Tru1I TTAA 2 cut(s) 213, 339
Tru9I TTAA 2 cut(s) 213, 339
TseFI GTSAC 1 cut(s) 152
Tsp45I GTSAC 1 cut(s) 152
TspDTI ATGAA 1 cut(s) 510
XapI RAATTY 3 cut(s) 57, 145, 412
XhoI CTCGAG 1 cut(s) 11
XspI CTAG 1 cut(s) 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.