RLG00000002131

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
N/A
Physical Location & Seq
Forward (+)
25982504 .. 25983692
1189 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002131

Sequence Viewer

Length: 1107 bp
ATGGATTCTGCTCAAGTCCCCCGTGTTGCAATAGATTTAGGAGAGGATATTTTAAATTATGCCAATATCCTCAGTGTTGCAATAGATTTAGGAGAGGATATTTTAAATTATGCCAATATCCTCAATGGAAGCTCAGGGCATAATGATAATATGTTTTCAACGTTTGGTTATCCTGCATCTGGTGATGCTATTAGCTATAGTCAGAACCCTATTCAAAGTCAAGTTGCTGCTCAAAGTGAACCCAAAACCACAAAGAAAGCCAAAAGAGCCAAGAATTTCTCCATTCAAGAAGACAACCTTCTTGTGTCTGCCTGGCTCAATACTACCCTTGATCCAGCAATAGGAAATGATCAAAAAGGTGCTGCTTATTGGAAAAGAATTTGGGACTATTTCTATGCTGAGAAGAACTTTGAACTAGAGTGTGATCATAATCAGGGTTCTCTCATGCATGGCTGGTCTGGAATTCAACTGGATGTGAACAAATTTTGTGGCTATTATGCTGAAATTGAAAGGACAAGAGCAAGTGGTACAACTGAACACGATAGGATTGTGGAAGCCAAACAAAAGTTTAGGAGGGAGCGAGGATACAACTTTACATATGAGCATTGTTGGCATGTGTTGAAGTTCCACCCGAAATGGAACTTGGAACTCTCTAGGAAAAAACCAAAGAAAACTCATGCTACGGTTCCTGCTACTTCGTCTCCTATCACTCCATCTGCTAGCCTAGATACAATAGATTTAGCTGATGGCAATGTTGAAGGCAATGAGTCTCCATGCTTGGAGAGGCCTATAGGCAAAAAGGCTGCCAAGACCTTGGCAAGGAAGGCAAAAGCTAAAGAGAAAGTGGAAGCAGCCCAATCTGAATTAGGAGACTATTATACTCTGAAAGTTGAACATGCTCATAAGGAGGATGAGCAATTTCAACTGATGTATGATGCAGAACAAGAGAACATTAAGCTGAGGAAACAAGAACTTGAAATTCAAGTTCGAAAAGAGGATAATGCAATAATGGCAATTGATACTTCTACAATGGAACCAATGCGGGCAGAATATTTTAGAGGACTTCAACAGGAAATCACAGCAAAAAGAGCTGCTAATGGAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

369

Amino Acids

41.62

Weight (kDa)

5.99

Isoelectric Point (pI)

49.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 198 - 359 5.7e-23 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 1042
AclI AACGTT 1 cut(s) 161
AclWI GGATC 1 cut(s) 326
AcsI RAATTY 5 cut(s) 274, 378, 462, 482, 978
AfaI GTAC 1 cut(s) 529
AfiI CCNNNNNNNGG 3 cut(s) 179, 341, 819
AjnI CCWGG 1 cut(s) 311
AjuI GAANNNNNNNTTGG 2 cut(s) 626, 658
AluBI AGCT 6 cut(s) 132, 195, 743, 833, 958, 1091
AluI AGCT 6 cut(s) 132, 195, 743, 833, 958, 1091
Alw26I GTCTC 3 cut(s) 705, 774, 864
AlwI GGATC 1 cut(s) 326
AoxI GGCC 1 cut(s) 785
ApeKI GCWGC 5 cut(s) 227, 362, 803, 851, 1091
ApoI RAATTY 5 cut(s) 274, 378, 462, 482, 978
AsuHPI GGTGA 1 cut(s) 194
AsuII TTCGAA 1 cut(s) 988
AsuNHI GCTAGC 1 cut(s) 719
BbsI GAAGAC 1 cut(s) 297
BbvCI CCTCAGC 1 cut(s) 959
BbvI GCAGC 5 cut(s) 214, 349, 790, 863, 1078
BccI CCATC 2 cut(s) 721, 740
BciT130I CCWGG 1 cut(s) 313
BciVI GTATCC 1 cut(s) 578
BclI TGATCA 2 cut(s) 349, 424
BcoDI GTCTC 3 cut(s) 705, 774, 864
BfaI CTAG 5 cut(s) 416, 654, 720, 725, 1105
BfmI CTRYAG 2 cut(s) 196, 789
BfuI GTATCC 1 cut(s) 578
BisI GCNGC 5 cut(s) 228, 363, 804, 852, 1092
BlsI GCNGC 5 cut(s) 229, 364, 805, 853, 1093
Bme1390I CCNGG 1 cut(s) 313
BmiI GGNNCC 2 cut(s) 687, 1035
BmrFI CCNGG 1 cut(s) 313
BmsI GCATC 3 cut(s) 175, 185, 925
BmtI GCTAGC 1 cut(s) 723
BpiI GAAGAC 1 cut(s) 297
Bpu10I CCTNAGC 2 cut(s) 133, 959
Bpu14I TTCGAA 1 cut(s) 988
BsaBI GATNNNNATC 1 cut(s) 429
BsaJI CCNNGG 1 cut(s) 813
BsaXI ACNNNNNCTCC 2 cut(s) 685, 715
Bsc4I CCNNNNNNNGG 3 cut(s) 179, 341, 819
Bse1I ACTGG 1 cut(s) 474
Bse3DI GCAATG 2 cut(s) 757, 769
Bse8I GATNNNNATC 1 cut(s) 429
BseBI CCWGG 1 cut(s) 313
BseDI CCNNGG 1 cut(s) 813
BseGI GGATG 2 cut(s) 478, 916
BseJI GATNNNNATC 1 cut(s) 429
BseLI CCNNNNNNNGG 3 cut(s) 179, 341, 819
BseMI GCAATG 2 cut(s) 757, 769
BseMII CTCAG 4 cut(s) 85, 147, 390, 950
BseNI ACTGG 1 cut(s) 474
BseXI GCAGC 5 cut(s) 214, 349, 790, 863, 1078
BshFI GGCC 1 cut(s) 787
BslFI GGGAC 2 cut(s) 2, 398
BslI CCNNNNNNNGG 3 cut(s) 179, 341, 819
BsmAI GTCTC 3 cut(s) 705, 774, 864
BsmBI CGTCTC 1 cut(s) 705
BsmFI GGGAC 2 cut(s) 2, 398
BsnI GGCC 1 cut(s) 787
Bsp119I TTCGAA 1 cut(s) 988
Bsp143I GATC 3 cut(s) 331, 349, 424
BspACI CCGC 1 cut(s) 1042
BspANI GGCC 1 cut(s) 787
BspCNI CTCAG 4 cut(s) 84, 146, 391, 951
BspLI GGNNCC 2 cut(s) 687, 1035
BspOI GCTAGC 1 cut(s) 723
BspPI GGATC 1 cut(s) 326
BspT104I TTCGAA 1 cut(s) 988
BsrDI GCAATG 2 cut(s) 757, 769
BsrI ACTGG 1 cut(s) 474
BssECI CCNNGG 1 cut(s) 813
BssMI GATC 3 cut(s) 331, 349, 424
BssT1I CCWWGG 1 cut(s) 813
Bst2UI CCWGG 1 cut(s) 313
Bst4CI ACNGT 1 cut(s) 685
BstBI TTCGAA 1 cut(s) 988
BstC8I GCNNGC 2 cut(s) 721, 1044
BstDEI CTNAG 4 cut(s) 71, 133, 399, 959
BstENI CCTNNNNNAGG 1 cut(s) 817
BstF5I GGATG 2 cut(s) 478, 916
BstKTI GATC 3 cut(s) 334, 352, 427
BstMAI GTCTC 3 cut(s) 705, 774, 864
BstMBI GATC 3 cut(s) 331, 349, 424
BstMWI GCNNNNNNNGC 5 cut(s) 266, 610, 824, 1010, 1088
BstNI CCWGG 1 cut(s) 313
BstNSI RCATGY 2 cut(s) 617, 899
BstSCI CCNGG 1 cut(s) 311
BstSFI CTRYAG 2 cut(s) 196, 789
BstV1I GCAGC 5 cut(s) 214, 349, 790, 863, 1078
BstV2I GAAGAC 1 cut(s) 297
BstXI CCANNNNNNTGG 1 cut(s) 814
BsuI GTATCC 1 cut(s) 578
BsuRI GGCC 1 cut(s) 787
BtsCI GGATG 2 cut(s) 478, 916
BtsIMutI CAGTG 1 cut(s) 79
Cac8I GCNNGC 2 cut(s) 721, 1044
Csp6I GTAC 1 cut(s) 528
CspCI CAANNNNNGTGG 2 cut(s) 469, 504
CviAII CATG 6 cut(s) 445, 449, 614, 677, 774, 896
CviQI GTAC 1 cut(s) 528
DdeI CTNAG 4 cut(s) 71, 133, 399, 959
DpnI GATC 3 cut(s) 333, 351, 426
DpnII GATC 3 cut(s) 331, 349, 424
DraI TTTAAA 2 cut(s) 54, 105
Eco130I CCWWGG 1 cut(s) 813
Eco147I AGGCCT 1 cut(s) 787
EcoNI CCTNNNNNAGG 1 cut(s) 817
EcoRI GAATTC 1 cut(s) 462
EcoRII CCWGG 1 cut(s) 311
EcoT14I CCWWGG 1 cut(s) 813
EcoT22I ATGCAT 1 cut(s) 450
ErhI CCWWGG 1 cut(s) 813
Esp3I CGTCTC 1 cut(s) 705
FaeI CATG 6 cut(s) 448, 452, 617, 680, 777, 899
FalI AAGNNNNNCTT 2 cut(s) 282, 314
FaqI GGGAC 2 cut(s) 2, 398
FatI CATG 6 cut(s) 444, 448, 613, 676, 773, 895
FauI CCCGC 1 cut(s) 1035
FauNDI CATATG 1 cut(s) 598
FbaI TGATCA 2 cut(s) 349, 424
Fnu4HI GCNGC 5 cut(s) 228, 363, 804, 852, 1092
FokI GGATG 2 cut(s) 485, 923
Fsp4HI GCNGC 5 cut(s) 228, 363, 804, 852, 1092
FspBI CTAG 5 cut(s) 416, 654, 720, 725, 1105
GluI GCNGC 5 cut(s) 228, 363, 804, 852, 1092
HaeIII GGCC 1 cut(s) 787
Hin1II CATG 6 cut(s) 448, 452, 617, 680, 777, 899
HinfI GANTC 2 cut(s) 5, 767
HphI GGTGA 1 cut(s) 194
Hpy166II GTNNAC 2 cut(s) 239, 478
Hpy188I TCNGA 3 cut(s) 204, 862, 885
Hpy188III TCNNGA 2 cut(s) 287, 459
Hpy8I GTNNAC 2 cut(s) 239, 478
HpyAV CCTTC 3 cut(s) 308, 752, 817
HpyCH4III ACNGT 1 cut(s) 685
HpyCH4IV ACGT 1 cut(s) 161
HpyCH4V TGCA 6 cut(s) 29, 80, 176, 448, 938, 1004
HpyF10VI GCNNNNNNNGC 5 cut(s) 266, 610, 824, 1010, 1088
HpyF3I CTNAG 4 cut(s) 71, 133, 399, 959
HpySE526I ACGT 1 cut(s) 161
Hsp92II CATG 6 cut(s) 448, 452, 617, 680, 777, 899
Ksp22I TGATCA 2 cut(s) 349, 424
Kzo9I GATC 3 cut(s) 331, 349, 424
LmnI GCTCC 1 cut(s) 577
Lsp1109I GCAGC 5 cut(s) 214, 349, 790, 863, 1078
LweI GCATC 3 cut(s) 175, 185, 925
MaeI CTAG 5 cut(s) 416, 654, 720, 725, 1105
MaeII ACGT 1 cut(s) 161
MalI GATC 3 cut(s) 333, 351, 426
MboI GATC 3 cut(s) 331, 349, 424
MboII GAAGA 2 cut(s) 302, 415
MfeI CAATTG 1 cut(s) 1014
MlyI GAGTC 1 cut(s) 776
Mph1103I ATGCAT 1 cut(s) 450
MseI TTAA 3 cut(s) 53, 104, 954
MspR9I CCNGG 1 cut(s) 313
MunI CAATTG 1 cut(s) 1014
MvaI CCWGG 1 cut(s) 313
MwoI GCNNNNNNNGC 5 cut(s) 266, 610, 824, 1010, 1088
NdeI CATATG 1 cut(s) 598
NdeII GATC 3 cut(s) 331, 349, 424
NheI GCTAGC 1 cut(s) 719
NlaIII CATG 6 cut(s) 448, 452, 617, 680, 777, 899
NlaIV GGNNCC 2 cut(s) 687, 1035
NsiI ATGCAT 1 cut(s) 450
NspI RCATGY 2 cut(s) 617, 899
NspV TTCGAA 1 cut(s) 988
PceI AGGCCT 1 cut(s) 787
PfeI GAWTC 1 cut(s) 5
PkrI GCNGC 5 cut(s) 229, 364, 805, 853, 1093
PleI GAGTC 1 cut(s) 775
PpsI GAGTC 1 cut(s) 775
Psp1406I AACGTT 1 cut(s) 161
Psp6I CCWGG 1 cut(s) 311
PspGI CCWGG 1 cut(s) 311
PspN4I GGNNCC 2 cut(s) 687, 1035
RsaI GTAC 1 cut(s) 529
RsaNI GTAC 1 cut(s) 528
SaqAI TTAA 3 cut(s) 53, 104, 954
SatI GCNGC 5 cut(s) 228, 363, 804, 852, 1092
Sau3AI GATC 3 cut(s) 331, 349, 424
SchI GAGTC 1 cut(s) 776
ScrFI CCNGG 1 cut(s) 313
SfaNI GCATC 3 cut(s) 175, 185, 925
SfcI CTRYAG 2 cut(s) 196, 789
SfuI TTCGAA 1 cut(s) 988
SmlI CTYRAG 1 cut(s) 12
SmoI CTYRAG 1 cut(s) 12
SseBI AGGCCT 1 cut(s) 787
SsiI CCGC 1 cut(s) 1042
SspI AATATT 1 cut(s) 1052
SspMI CTAG 5 cut(s) 416, 654, 720, 725, 1105
StuI AGGCCT 1 cut(s) 787
StyD4I CCNGG 1 cut(s) 311
StyI CCWWGG 1 cut(s) 813
TaaI ACNGT 1 cut(s) 685
TaiI ACGT 1 cut(s) 164
TaqI TCGA 1 cut(s) 988
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 3 cut(s) 53, 104, 954
Tru9I TTAA 3 cut(s) 53, 104, 954
TscAI CASTG 1 cut(s) 79
TseI GCWGC 5 cut(s) 227, 362, 803, 851, 1091
TspRI CASTG 1 cut(s) 79
XagI CCTNNNNNAGG 1 cut(s) 817
XapI RAATTY 5 cut(s) 274, 378, 462, 482, 978
XceI RCATGY 2 cut(s) 617, 899
XspI CTAG 5 cut(s) 416, 654, 720, 725, 1105
Zsp2I ATGCAT 1 cut(s) 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.