Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

39301895 .. 39303685

Gene Structure 1791 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002760

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGTCGCCGCCACCCTCGCCGCCCAATTCCCCCTCATCTCGCCATCCAAGACTGCGTCAAGGTCATCAACAAGAAAAAACTGAAGGGAACCAGCCTCATGTCGAATGTGAAGAAACCGAAGGGAACCAGCCGCGTCCAAGATTTGGATCATGCAGCGGCTTCGCCACCCCAGTAGACGAGAACGGGAATTTGAAAGTTTCAAGCTTTGGACTCAGCGCTGTCATGGGTCAGATCCAACCCAACGGGCTCCTACATACGATTTTCGGGACTCCATCTTACGTGGCGCAACAGATCTTAACCAAGAAAGAGAACGACGGAGCCAAGATGGACATGTGGTCGTACGGGTATTTGCCGTTTAACGACCTAAATCTGATTGCCATGTACAAGAAGATTTACAAGGAGGCCGTGAGTACAGTAAAGCTGGGGAGGAGCAGAATGCCATTACGAGCTTCAACGATTTCGATATTGTTTCGTTCTCAGCAGATCTTGAATGACTCGTGGTTGAGAAGAGGCCGCGAGTACAAGGAGATCAATTTCCACGATGAAGATTACAGTAAAGCTGAGGAGGAGCAGAAGGCCATTACGAGCTTCAACGATTTCGATATTGTTTTGTTCTCAGCGGGTTTAGATCTATTGTTCGAATCGAGTAACCAGGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009268 GO:0009628 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04113 ko04138 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04113 map04138 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

220

Amino Acids

24.72

Weight (kDa)

6.22

Isoelectric Point (pI)

60.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	58 - 128	9.8e-09	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	143
AccI	GTMKAC	1 cut(s)	174
AccII	CGCG	2 cut(s)	133, 516
AciI	CCGC	6 cut(s)	8, 20, 131, 156, 514, 620
AclWI	GGATC	2 cut(s)	154, 226
AcsI	RAATTY	1 cut(s)	187
AcuI	CTGAAG	1 cut(s)	102
AfaI	GTAC	4 cut(s)	341, 383, 412, 521
AfeI	AGCGCT	1 cut(s)	217
AfiI	CCNNNNNNNGG	1 cut(s)	143
AflIII	ACRYGT	1 cut(s)	330
AgsI	TTSAA	5 cut(s)	193, 201, 453, 490, 592
AhdI	GACNNNNNGTC	1 cut(s)	334
AjnI	CCWGG	1 cut(s)	651
AluBI	AGCT	5 cut(s)	204, 421, 449, 560, 588
AluI	AGCT	5 cut(s)	204, 421, 449, 560, 588
AlwI	GGATC	2 cut(s)	154, 226
Aor51HI	AGCGCT	1 cut(s)	217
AoxI	GGCC	3 cut(s)	402, 511, 576
ApeKI	GCWGC	1 cut(s)	153
ApoI	RAATTY	1 cut(s)	187
AspLEI	GCGC	2 cut(s)	218, 286
AsuII	TTCGAA	1 cut(s)	639
BanII	GRGCYC	1 cut(s)	249
BauI	CACGAG	1 cut(s)	496
BbvCI	CCTCAGC	1 cut(s)	561
BbvI	GCAGC	1 cut(s)	165
BccI	CCATC	3 cut(s)	51, 280, 319
BceAI	ACGGC	2 cut(s)	337, 389
BcgI	CGANNNNNNTGC	2 cut(s)	142, 176
BciT130I	CCWGG	1 cut(s)	653
BfaI	CTAG	1 cut(s)	658
BfoI	RGCGCY	1 cut(s)	219
BglII	AGATCT	3 cut(s)	291, 483, 628
BisI	GCNGC	6 cut(s)	8, 20, 131, 154, 157, 514
BlsI	GCNGC	6 cut(s)	9, 21, 132, 155, 158, 515
Bme1390I	CCNGG	1 cut(s)	653
BmeRI	GACNNNNNGTC	1 cut(s)	334
BmiI	GGNNCC	4 cut(s)	89, 125, 248, 319
BmrFI	CCNGG	1 cut(s)	653
BmrI	ACTGGG	1 cut(s)	164
BmuI	ACTGGG	1 cut(s)	164
Bpu10I	CCTNAGC	1 cut(s)	561
Bpu14I	TTCGAA	1 cut(s)	639
BsaAI	YACGTR	1 cut(s)	280
BsaBI	GATNNNNATC	1 cut(s)	145
Bsc4I	CCNNNNNNNGG	1 cut(s)	143
Bse1I	ACTGG	1 cut(s)	170
Bse8I	GATNNNNATC	1 cut(s)	145
BseBI	CCWGG	1 cut(s)	653
BseGI	GGATG	1 cut(s)	43
BseJI	GATNNNNATC	1 cut(s)	145
BseLI	CCNNNNNNNGG	1 cut(s)	143
BseMII	CTCAG	4 cut(s)	226, 491, 552, 630
BseNI	ACTGG	1 cut(s)	170
BseRI	GAGGAG	3 cut(s)	442, 578, 581
BseXI	GCAGC	1 cut(s)	165
BseYI	CCCAGC	1 cut(s)	421
Bsh1236I	CGCG	2 cut(s)	133, 516
BshFI	GGCC	3 cut(s)	404, 513, 578
BsiWI	CGTACG	1 cut(s)	339
BslFI	GGGAC	1 cut(s)	280
BslI	CCNNNNNNNGG	1 cut(s)	143
BsmFI	GGGAC	1 cut(s)	280
BsmI	GAATGC	1 cut(s)	441
BsnI	GGCC	3 cut(s)	404, 513, 578
Bsp119I	TTCGAA	1 cut(s)	639
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp1407I	TGTACA	1 cut(s)	381
Bsp143I	GATC	6 cut(s)	146, 231, 291, 483, 528, 628
BspACI	CCGC	6 cut(s)	8, 20, 131, 156, 514, 620
BspANI	GGCC	3 cut(s)	404, 513, 578
BspCNI	CTCAG	4 cut(s)	225, 490, 553, 629
BspFNI	CGCG	2 cut(s)	133, 516
BspLI	GGNNCC	4 cut(s)	89, 125, 248, 319
BspPI	GGATC	2 cut(s)	154, 226
BspT104I	TTCGAA	1 cut(s)	639
BsrGI	TGTACA	1 cut(s)	381
BsrI	ACTGG	1 cut(s)	170
BssMI	GATC	6 cut(s)	146, 231, 291, 483, 528, 628
BssSI	CACGAG	1 cut(s)	496
Bst2BI	CACGAG	1 cut(s)	496
Bst2UI	CCWGG	1 cut(s)	653
Bst4CI	ACNGT	2 cut(s)	415, 554
Bst6I	CTCTTC	1 cut(s)	502
BstAUI	TGTACA	1 cut(s)	381
BstBAI	YACGTR	1 cut(s)	280
BstBI	TTCGAA	1 cut(s)	639
BstDEI	CTNAG	4 cut(s)	212, 477, 561, 616
BstF5I	GGATG	1 cut(s)	43
BstFNI	CGCG	2 cut(s)	133, 516
BstH2I	RGCGCY	1 cut(s)	219
BstHHI	GCGC	2 cut(s)	218, 286
BstKTI	GATC	6 cut(s)	149, 234, 294, 486, 531, 631
BstMBI	GATC	6 cut(s)	146, 231, 291, 483, 528, 628
BstMWI	GCNNNNNNNGC	1 cut(s)	16
BstNI	CCWGG	1 cut(s)	653
BstNSI	RCATGY	1 cut(s)	334
BstSCI	CCNGG	1 cut(s)	651
BstUI	CGCG	2 cut(s)	133, 516
BstV1I	GCAGC	1 cut(s)	165
BstX2I	RGATCY	4 cut(s)	231, 291, 483, 628
BstYI	RGATCY	4 cut(s)	231, 291, 483, 628
BsuRI	GGCC	3 cut(s)	404, 513, 578
BtsCI	GGATG	1 cut(s)	43
CfoI	GCGC	2 cut(s)	218, 286
CseI	GACGC	2 cut(s)	44, 122
CsiI	ACCWGGT	1 cut(s)	651
Csp6I	GTAC	4 cut(s)	340, 382, 411, 520
CviAII	CATG	5 cut(s)	98, 150, 223, 331, 379
CviQI	GTAC	4 cut(s)	340, 382, 411, 520
DdeI	CTNAG	4 cut(s)	212, 477, 561, 616
DpnI	GATC	6 cut(s)	148, 233, 293, 485, 530, 630
DpnII	GATC	6 cut(s)	146, 231, 291, 483, 528, 628
DriI	GACNNNNNGTC	1 cut(s)	334
Eam1104I	CTCTTC	1 cut(s)	502
Eam1105I	GACNNNNNGTC	1 cut(s)	334
EarI	CTCTTC	1 cut(s)	502
Eco24I	GRGCYC	1 cut(s)	249
Eco47III	AGCGCT	1 cut(s)	217
Eco57I	CTGAAG	1 cut(s)	102
EcoRII	CCWGG	1 cut(s)	651
EcoT38I	GRGCYC	1 cut(s)	249
FaeI	CATG	5 cut(s)	101, 153, 226, 334, 382
FaiI	YATR	6 cut(s)	99, 151, 224, 255, 332, 380
FaqI	GGGAC	1 cut(s)	280
FatI	CATG	5 cut(s)	97, 149, 222, 330, 378
FauI	CCCGC	1 cut(s)	613
FblI	GTMKAC	1 cut(s)	174
Fnu4HI	GCNGC	6 cut(s)	8, 20, 131, 154, 157, 514
FokI	GGATG	1 cut(s)	30
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	6 cut(s)	8, 20, 131, 154, 157, 514
FspBI	CTAG	1 cut(s)	658
GlaI	GCGC	2 cut(s)	217, 285
GluI	GCNGC	6 cut(s)	8, 20, 131, 154, 157, 514
GsaI	CCCAGC	1 cut(s)	425
HaeII	RGCGCY	1 cut(s)	219
HaeIII	GGCC	3 cut(s)	404, 513, 578
HgaI	GACGC	2 cut(s)	44, 122
HhaI	GCGC	2 cut(s)	218, 286
Hin1II	CATG	5 cut(s)	101, 153, 226, 334, 382
Hin6I	GCGC	2 cut(s)	216, 284
HinP1I	GCGC	2 cut(s)	216, 284
HindIII	AAGCTT	1 cut(s)	202
HinfI	GANTC	4 cut(s)	210, 268, 494, 641
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	2 cut(s)	231, 372
Hpy188III	TCNNGA	2 cut(s)	265, 487
Hpy8I	GTNNAC	1 cut(s)	175
Hpy99I	CGWCG	1 cut(s)	317
HpyAV	CCTTC	3 cut(s)	77, 113, 568
HpyCH4III	ACNGT	2 cut(s)	415, 554
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	1 cut(s)	153
HpyF10VI	GCNNNNNNNGC	1 cut(s)	16
HpyF3I	CTNAG	4 cut(s)	212, 477, 561, 616
HpySE526I	ACGT	1 cut(s)	279
Hsp92II	CATG	5 cut(s)	101, 153, 226, 334, 382
HspAI	GCGC	2 cut(s)	216, 284
Kzo9I	GATC	6 cut(s)	146, 231, 291, 483, 528, 628
LmnI	GCTCC	4 cut(s)	252, 317, 429, 568
LpnPI	CCDG	5 cut(s)	104, 140, 183, 407, 638
Lsp1109I	GCAGC	1 cut(s)	165
MabI	ACCWGGT	1 cut(s)	651
MaeI	CTAG	1 cut(s)	658
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	1 cut(s)	647
MalI	GATC	6 cut(s)	148, 233, 293, 485, 530, 630
MboI	GATC	6 cut(s)	146, 231, 291, 483, 528, 628
MboII	GAAGA	4 cut(s)	122, 400, 519, 557
MflI	RGATCY	4 cut(s)	231, 291, 483, 628
MhlI	GDGCHC	1 cut(s)	249
MluCI	AATT	3 cut(s)	25, 187, 532
MlyI	GAGTC	3 cut(s)	204, 262, 488
MmeI	TCCRAC	1 cut(s)	259
MnlI	CCTC	8 cut(s)	25, 43, 105, 394, 420, 503, 556, 559
MseI	TTAA	2 cut(s)	296, 357
MspA1I	CMGCKG	2 cut(s)	156, 620
MspR9I	CCNGG	1 cut(s)	653
Mva1269I	GAATGC	1 cut(s)	441
MvaI	CCWGG	1 cut(s)	653
MvnI	CGCG	2 cut(s)	133, 516
MwoI	GCNNNNNNNGC	1 cut(s)	16
NdeII	GATC	6 cut(s)	146, 231, 291, 483, 528, 628
NlaIII	CATG	5 cut(s)	101, 153, 226, 334, 382
NlaIV	GGNNCC	4 cut(s)	89, 125, 248, 319
NspI	RCATGY	1 cut(s)	334
NspV	TTCGAA	1 cut(s)	639
PciI	ACATGT	1 cut(s)	330
PctI	GAATGC	1 cut(s)	441
PfeI	GAWTC	1 cut(s)	641
Pfl23II	CGTACG	1 cut(s)	339
PflFI	GACNNNGTC	1 cut(s)	54
PflMI	CCANNNNNTGG	1 cut(s)	143
PkrI	GCNGC	6 cut(s)	9, 21, 132, 155, 158, 515
PleI	GAGTC	3 cut(s)	204, 262, 488
PpsI	GAGTC	3 cut(s)	204, 262, 488
Ppu21I	YACGTR	1 cut(s)	280
PscI	ACATGT	1 cut(s)	330
Psp6I	CCWGG	1 cut(s)	651
PspFI	CCCAGC	1 cut(s)	421
PspGI	CCWGG	1 cut(s)	651
PspLI	CGTACG	1 cut(s)	339
PspN4I	GGNNCC	4 cut(s)	89, 125, 248, 319
PsuI	RGATCY	4 cut(s)	231, 291, 483, 628
PsyI	GACNNNGTC	1 cut(s)	54
RsaI	GTAC	4 cut(s)	341, 383, 412, 521
RsaNI	GTAC	4 cut(s)	340, 382, 411, 520
SaqAI	TTAA	2 cut(s)	296, 357
SatI	GCNGC	6 cut(s)	8, 20, 131, 154, 157, 514
Sau3AI	GATC	6 cut(s)	146, 231, 291, 483, 528, 628
SchI	GAGTC	3 cut(s)	204, 262, 488
ScrFI	CCNGG	1 cut(s)	653
SduI	GDGCHC	1 cut(s)	249
SetI	ASST	9 cut(s)	64, 206, 282, 366, 423, 451, 562, 590, 657
SexAI	ACCWGGT	1 cut(s)	651
SfuI	TTCGAA	1 cut(s)	639
Sse9I	AATT	3 cut(s)	25, 187, 532
SsiI	CCGC	6 cut(s)	8, 20, 131, 156, 514, 620
SspMI	CTAG	1 cut(s)	658
StyD4I	CCNGG	1 cut(s)	651
TaaI	ACNGT	2 cut(s)	415, 554
TaiI	ACGT	1 cut(s)	282
TaqI	TCGA	5 cut(s)	102, 461, 600, 639, 644
TasI	AATT	3 cut(s)	25, 187, 532
TatI	WGTACW	3 cut(s)	381, 410, 519
TauI	GCSGC	5 cut(s)	10, 22, 133, 159, 516
TfiI	GAWTC	1 cut(s)	641
Tru1I	TTAA	2 cut(s)	296, 357
Tru9I	TTAA	2 cut(s)	296, 357
TseI	GCWGC	1 cut(s)	153
TspDTI	ATGAA	1 cut(s)	558
TspGWI	ACGGA	1 cut(s)	330
Tth111I	GACNNNGTC	1 cut(s)	54
Van91I	CCANNNNNTGG	1 cut(s)	143
XapI	RAATTY	1 cut(s)	187
XceI	RCATGY	1 cut(s)	334
XmiI	GTMKAC	1 cut(s)	174
XspI	CTAG	1 cut(s)	658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.