Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

42656447 .. 42658058

Gene Structure 1612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002986

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGATGTTTCTGGTGGCGGTGTGAGTAATCGGTTCGCCTTTAGCAGCGGCCCGGTTGCATTGGCCGCTGATAGTGGTAACGATAGGATCATGACTCTGGGATGGGCGGCAATGGTAGCAAAGATTGGTGGTGTCATGAGGATTGTGAAGGTTCAAGGAGGCCACGTTATTAGATCAACTGCGAGAAAAGACAGGCACAGCAAGATCTACATGTCCAAGGGCCCAAGAGACAGGAGGTCCGGCTTTCAGCTCAGTCTGCCATGGAGTTCTATGATGTTCAAGACCGTCTTGGCTTTGATAGACCAAGCAAGGCCATTGACTAGCTCATTCACAAGCCCAAGGCCGCCATTGAAGCTCTCGAAGATTCTTCTACTACACACCACCAGTCTCAGCATCACCAAGGAGGCAATGCCGAGCCAGAAACCGTCAAAACTTATCAGCCATTGCCAAAGGCCCTTTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0045962 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

155

Amino Acids

16.74

Weight (kDa)

11.41

Isoelectric Point (pI)

41.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	18, 48, 66, 107, 344
AclWI	GGATC	1 cut(s)	95
AcoI	YGGCCR	1 cut(s)	63
AflIII	ACRYGT	1 cut(s)	210
AgsI	TTSAA	3 cut(s)	155, 280, 352
AhdI	GACNNNNNGTC	1 cut(s)	235
AluBI	AGCT	3 cut(s)	250, 324, 355
AluI	AGCT	3 cut(s)	250, 324, 355
Alw26I	GTCTC	2 cut(s)	222, 392
AlwI	GGATC	1 cut(s)	95
AoxI	GGCC	7 cut(s)	49, 63, 160, 220, 311, 341, 452
ApaI	GGGCCC	1 cut(s)	224
ApeKI	GCWGC	1 cut(s)	45
AspS9I	GGNCC	5 cut(s)	50, 220, 221, 237, 453
AsuC2I	CCSGG	1 cut(s)	53
AsuHPI	GGTGA	1 cut(s)	388
AvaII	GGWCC	1 cut(s)	237
BaeGI	GKGCMC	1 cut(s)	224
BanII	GRGCYC	1 cut(s)	224
BbvI	GCAGC	1 cut(s)	57
BccI	CCATC	1 cut(s)	96
BcnI	CCSGG	1 cut(s)	53
BcoDI	GTCTC	2 cut(s)	222, 392
BfaI	CTAG	1 cut(s)	321
BglII	AGATCT	1 cut(s)	204
BisI	GCNGC	5 cut(s)	46, 49, 66, 108, 344
BlsI	GCNGC	5 cut(s)	47, 50, 67, 109, 345
Bme1390I	CCNGG	1 cut(s)	53
Bme18I	GGWCC	1 cut(s)	237
BmeRI	GACNNNNNGTC	1 cut(s)	235
BmgT120I	GGNCC	5 cut(s)	50, 220, 221, 237, 453
BmiI	GGNNCC	1 cut(s)	222
BmrFI	CCNGG	1 cut(s)	53
BmsI	GCATC	1 cut(s)	402
BpuMI	CCSGG	1 cut(s)	53
BsaJI	CCNNGG	4 cut(s)	216, 260, 338, 399
BsaXI	ACNNNNNCTCC	2 cut(s)	150, 180
Bse1I	ACTGG	1 cut(s)	384
Bse3DI	GCAATG	3 cut(s)	117, 414, 442
BseDI	CCNNGG	4 cut(s)	216, 260, 338, 399
BseGI	GGATG	2 cut(s)	10, 107
BseMI	GCAATG	3 cut(s)	117, 414, 442
BseMII	CTCAG	2 cut(s)	265, 403
BseNI	ACTGG	1 cut(s)	384
BseSI	GKGCMC	1 cut(s)	224
BseXI	GCAGC	1 cut(s)	57
BshFI	GGCC	7 cut(s)	51, 65, 162, 222, 313, 343, 454
BsiSI	CCGG	2 cut(s)	53, 240
BsmAI	GTCTC	2 cut(s)	222, 392
BsnI	GGCC	7 cut(s)	51, 65, 162, 222, 313, 343, 454
Bsp120I	GGGCCC	1 cut(s)	220
Bsp1286I	GDGCHC	1 cut(s)	224
Bsp143I	GATC	3 cut(s)	87, 173, 204
Bsp19I	CCATGG	1 cut(s)	260
BspACI	CCGC	5 cut(s)	18, 48, 66, 107, 344
BspANI	GGCC	7 cut(s)	51, 65, 162, 222, 313, 343, 454
BspCNI	CTCAG	2 cut(s)	264, 402
BspHI	TCATGA	2 cut(s)	90, 135
BspLI	GGNNCC	1 cut(s)	222
BspPI	GGATC	1 cut(s)	95
BsrDI	GCAATG	3 cut(s)	117, 414, 442
BsrI	ACTGG	1 cut(s)	384
BssECI	CCNNGG	4 cut(s)	216, 260, 338, 399
BssMI	GATC	3 cut(s)	87, 173, 204
BssT1I	CCWWGG	4 cut(s)	216, 260, 338, 399
Bst4CI	ACNGT	2 cut(s)	286, 426
BstDEI	CTNAG	2 cut(s)	251, 389
BstDSI	CCRYGG	1 cut(s)	260
BstF5I	GGATG	2 cut(s)	10, 107
BstKTI	GATC	3 cut(s)	90, 176, 207
BstMAI	GTCTC	2 cut(s)	222, 392
BstMBI	GATC	3 cut(s)	87, 173, 204
BstMWI	GCNNNNNNNGC	4 cut(s)	65, 116, 256, 352
BstNSI	RCATGY	1 cut(s)	214
BstSCI	CCNGG	1 cut(s)	51
BstSLI	GKGCMC	1 cut(s)	224
BstV1I	GCAGC	1 cut(s)	57
BstX2I	RGATCY	1 cut(s)	204
BstYI	RGATCY	1 cut(s)	204
BsuRI	GGCC	7 cut(s)	51, 65, 162, 222, 313, 343, 454
BtgI	CCRYGG	1 cut(s)	260
BtsCI	GGATG	2 cut(s)	10, 107
CciI	TCATGA	2 cut(s)	90, 135
Cfr13I	GGNCC	5 cut(s)	50, 220, 221, 237, 453
CviAII	CATG	4 cut(s)	91, 136, 211, 261
DdeI	CTNAG	2 cut(s)	251, 389
DpnI	GATC	3 cut(s)	89, 175, 206
DpnII	GATC	3 cut(s)	87, 173, 204
DriI	GACNNNNNGTC	1 cut(s)	235
EaeI	YGGCCR	1 cut(s)	63
Eam1105I	GACNNNNNGTC	1 cut(s)	235
Eco130I	CCWWGG	4 cut(s)	216, 260, 338, 399
Eco24I	GRGCYC	1 cut(s)	224
Eco47I	GGWCC	1 cut(s)	237
EcoO109I	RGGNCCY	2 cut(s)	220, 453
EcoT14I	CCWWGG	4 cut(s)	216, 260, 338, 399
EcoT38I	GRGCYC	1 cut(s)	224
ErhI	CCWWGG	4 cut(s)	216, 260, 338, 399
FaeI	CATG	4 cut(s)	94, 139, 214, 264
FaiI	YATR	5 cut(s)	92, 137, 212, 262, 272
FalI	AAGNNNNNCTT	2 cut(s)	272, 304
FatI	CATG	4 cut(s)	90, 135, 210, 260
Fnu4HI	GCNGC	5 cut(s)	46, 49, 66, 108, 344
FokI	GGATG	2 cut(s)	17, 114
FriOI	GRGCYC	1 cut(s)	224
Fsp4HI	GCNGC	5 cut(s)	46, 49, 66, 108, 344
FspBI	CTAG	1 cut(s)	321
GluI	GCNGC	5 cut(s)	46, 49, 66, 108, 344
HaeIII	GGCC	7 cut(s)	51, 65, 162, 222, 313, 343, 454
HapII	CCGG	2 cut(s)	53, 240
Hin1II	CATG	4 cut(s)	94, 139, 214, 264
HinfI	GANTC	2 cut(s)	94, 364
HpaII	CCGG	2 cut(s)	53, 240
HphI	GGTGA	1 cut(s)	388
Hpy188III	TCNNGA	4 cut(s)	91, 136, 280, 358
HpyAV	CCTTC	1 cut(s)	142
HpyCH4III	ACNGT	2 cut(s)	286, 426
HpyCH4IV	ACGT	1 cut(s)	165
HpyCH4V	TGCA	1 cut(s)	59
HpyF10VI	GCNNNNNNNGC	4 cut(s)	65, 116, 256, 352
HpyF3I	CTNAG	2 cut(s)	251, 389
HpySE526I	ACGT	1 cut(s)	165
Hsp92II	CATG	4 cut(s)	94, 139, 214, 264
Kzo9I	GATC	3 cut(s)	87, 173, 204
LpnPI	CCDG	7 cut(s)	66, 83, 178, 217, 253, 397, 431
Lsp1109I	GCAGC	1 cut(s)	57
LweI	GCATC	1 cut(s)	402
MaeI	CTAG	1 cut(s)	321
MaeII	ACGT	1 cut(s)	165
MaeIII	GTNAC	1 cut(s)	77
MalI	GATC	3 cut(s)	89, 175, 206
MboI	GATC	3 cut(s)	87, 173, 204
MboII	GAAGA	2 cut(s)	359, 373
MflI	RGATCY	1 cut(s)	204
MhlI	GDGCHC	1 cut(s)	224
MlyI	GAGTC	1 cut(s)	88
MnlI	CCTC	4 cut(s)	132, 152, 228, 397
MspA1I	CMGCKG	2 cut(s)	48, 68
MspI	CCGG	2 cut(s)	53, 240
MspR9I	CCNGG	1 cut(s)	53
MwoI	GCNNNNNNNGC	4 cut(s)	65, 116, 256, 352
NciI	CCSGG	1 cut(s)	53
NcoI	CCATGG	1 cut(s)	260
NdeII	GATC	3 cut(s)	87, 173, 204
NlaIII	CATG	4 cut(s)	94, 139, 214, 264
NlaIV	GGNNCC	1 cut(s)	222
NmeAIII	GCCGAG	1 cut(s)	438
NspI	RCATGY	1 cut(s)	214
PagI	TCATGA	2 cut(s)	90, 135
PciI	ACATGT	1 cut(s)	210
PfeI	GAWTC	1 cut(s)	364
PkrI	GCNGC	5 cut(s)	47, 50, 67, 109, 345
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
PscI	ACATGT	1 cut(s)	210
PspN4I	GGNNCC	1 cut(s)	222
PspOMI	GGGCCC	1 cut(s)	220
PspPI	GGNCC	5 cut(s)	50, 220, 221, 237, 453
PsuI	RGATCY	1 cut(s)	204
SatI	GCNGC	5 cut(s)	46, 49, 66, 108, 344
Sau3AI	GATC	3 cut(s)	87, 173, 204
Sau96I	GGNCC	5 cut(s)	50, 220, 221, 237, 453
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	1 cut(s)	53
SduI	GDGCHC	1 cut(s)	224
SetI	ASST	6 cut(s)	153, 168, 239, 252, 326, 357
SfaNI	GCATC	1 cut(s)	402
SinI	GGWCC	1 cut(s)	237
SsiI	CCGC	5 cut(s)	18, 48, 66, 107, 344
SspMI	CTAG	1 cut(s)	321
StyD4I	CCNGG	1 cut(s)	51
StyI	CCWWGG	4 cut(s)	216, 260, 338, 399
TaaI	ACNGT	2 cut(s)	286, 426
TaiI	ACGT	1 cut(s)	168
TaqI	TCGA	1 cut(s)	359
TauI	GCSGC	4 cut(s)	51, 68, 110, 346
TfiI	GAWTC	1 cut(s)	364
TseI	GCWGC	1 cut(s)	45
VpaK11BI	GGWCC	1 cut(s)	237
XceI	RCATGY	1 cut(s)	214
XcmI	CCANNNNNNNNNTGG	1 cut(s)	455
XspI	CTAG	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.