Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

62240552 .. 62242805

Gene Structure 2254 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004783

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGATTTGGGAGGTAGATGCTGGAGTGGAGGCCAAAGATTGCTTCCAGATTTATCTGGTATATCGTTTGATACATATGCTGATATTGCATATGAGGGCACAGCTGATGTAAGCATTGTCATTTTGTTGTACAATATCTCTTTTTGCATCTATTTGTTTGTTATTGCTCTTGGTCCCAGAGGGAGGAATGTTGTGTTGGATGAGTACGGTAGCCCCAAAGTGGTGAATGACGGAGTAACAATTGCTAGAGCTATTGAGCAACCTGATGCTATGGAAAATGCTGGTGCAGCTCTCATTAGGGAGGTTGCCAGTAAGACCAATGATTCTACTGGTGACGGCACAACAATAGCATCCATTCTTGCATGGGAGATTATCAAGCTTGGGCTTTTGAGTGTTACCTCTGGTGCAAATCCCGTTTCAATTAAGAAGGGGATTGATAAAACTGTACAGGCATTGGTGGACGAACTAGAGAACAAGTCTAGGCCTCTTAAGGGTTGTGATGATGTTAAAGCTGTTGCATCTATTTCTGCTGGGAATGATGAGCAAATTGGAACGATGATTGCTGATGCTATCGACAAGGTTGGACCTGATGGTGTTTTGTCCATTGAGTCTTCATCCTCATTTGAGACTACCGTCGAAGTGGAAGAAGGAATGGAGATTGAGAGAGGATATATCTCCCTTCAATTTGTTACAAACCCGGAGAAATTGATTGTTGAGTTTGAGAATGCAAGAGATGTCTCTGGGGAGGCTTTGGCGACTCTTGTTGTCAACAAGTTGAGGGGTATCCTTAATGTTGCTGCCATCAAAGCTCCAGGTTTTGGTGAGTGCAGAAAGGCTCTCCTCCAAGATATTGCCATTTTGACTGGTAACCTATTGGGTTATTTTATCAATCTGATATTGTTCACAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005840 GO:0006457 GO:0006458 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010154 GO:0016020 GO:0016043 GO:0022414 GO:0022626 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044183 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048046 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051082 GO:0061077 GO:0061458 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

304

Amino Acids

32.22

Weight (kDa)

4.46

Isoelectric Point (pI)

26.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn60_TCP1	PF00118	56 - 229	6e-27	TCP-1/cpn60 chaperonin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	818
AfaI	GTAC	3 cut(s)	131, 206, 447
AfiI	CCNNNNNNNGG	4 cut(s)	183, 220, 491, 818
AflII	CTTAAG	1 cut(s)	488
AgsI	TTSAA	2 cut(s)	420, 683
AjnI	CCWGG	1 cut(s)	811
AjuI	GAANNNNNNNTTGG	4 cut(s)	27, 59, 179, 211
AluBI	AGCT	6 cut(s)	104, 251, 290, 379, 512, 809
AluI	AGCT	6 cut(s)	104, 251, 290, 379, 512, 809
Alw26I	GTCTC	2 cut(s)	620, 742
AoxI	GGCC	2 cut(s)	31, 482
ApeKI	GCWGC	2 cut(s)	287, 797
AspS9I	GGNCC	2 cut(s)	173, 584
AsuC2I	CCSGG	1 cut(s)	698
AsuHPI	GGTGA	3 cut(s)	235, 344, 833
AvaII	GGWCC	2 cut(s)	173, 584
BaeGI	GKGCMC	1 cut(s)	101
BbsI	GAAGAC	1 cut(s)	603
BbvI	GCAGC	2 cut(s)	299, 784
BccI	CCATC	2 cut(s)	584, 809
BceAI	ACGGC	1 cut(s)	352
BciT130I	CCWGG	1 cut(s)	813
BciVI	GTATCC	1 cut(s)	794
BcnI	CCSGG	1 cut(s)	698
BcoDI	GTCTC	2 cut(s)	620, 742
BfaI	CTAG	3 cut(s)	246, 467, 480
BfrI	CTTAAG	1 cut(s)	488
BfuI	GTATCC	1 cut(s)	794
BisI	GCNGC	2 cut(s)	288, 798
BlsI	GCNGC	2 cut(s)	289, 799
Bme1390I	CCNGG	2 cut(s)	698, 813
Bme18I	GGWCC	2 cut(s)	173, 584
BmgT120I	GGNCC	2 cut(s)	173, 584
BmiI	GGNNCC	1 cut(s)	175
BmrFI	CCNGG	2 cut(s)	698, 813
BmsI	GCATC	6 cut(s)	8, 156, 256, 359, 527, 556
BoxI	GACNNNNGTC	1 cut(s)	632
BpiI	GAAGAC	1 cut(s)	603
BpmI	CTGGAG	2 cut(s)	43, 795
BpuMI	CCSGG	1 cut(s)	698
Bsc4I	CCNNNNNNNGG	4 cut(s)	183, 220, 491, 818
Bse1I	ACTGG	3 cut(s)	309, 334, 868
BseBI	CCWGG	1 cut(s)	813
BseGI	GGATG	3 cut(s)	205, 350, 614
BseLI	CCNNNNNNNGG	4 cut(s)	183, 220, 491, 818
BseNI	ACTGG	3 cut(s)	309, 334, 868
BseRI	GAGGAG	1 cut(s)	830
BseSI	GKGCMC	1 cut(s)	101
BseXI	GCAGC	2 cut(s)	299, 784
BseYI	CCCAGC	1 cut(s)	530
BsgI	GTGCAG	2 cut(s)	306, 847
BshFI	GGCC	2 cut(s)	33, 484
BsiSI	CCGG	1 cut(s)	698
BslFI	GGGAC	1 cut(s)	159
BslI	CCNNNNNNNGG	4 cut(s)	183, 220, 491, 818
BsmAI	GTCTC	2 cut(s)	620, 742
BsmFI	GGGAC	1 cut(s)	159
BsmI	GAATGC	1 cut(s)	730
BsnI	GGCC	2 cut(s)	33, 484
Bsp1286I	GDGCHC	1 cut(s)	101
Bsp1407I	TGTACA	2 cut(s)	129, 445
BspANI	GGCC	2 cut(s)	33, 484
BspLI	GGNNCC	1 cut(s)	175
BspTI	CTTAAG	1 cut(s)	488
BsrGI	TGTACA	2 cut(s)	129, 445
BsrI	ACTGG	3 cut(s)	309, 334, 868
Bst2UI	CCWGG	1 cut(s)	813
Bst4CI	ACNGT	3 cut(s)	209, 445, 634
BstAFI	CTTAAG	1 cut(s)	488
BstAUI	TGTACA	2 cut(s)	129, 445
BstEII	GGTNACC	1 cut(s)	866
BstF5I	GGATG	3 cut(s)	205, 350, 614
BstMAI	GTCTC	2 cut(s)	620, 742
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 287, 806
BstNI	CCWGG	1 cut(s)	813
BstPAI	GACNNNNGTC	1 cut(s)	632
BstPI	GGTNACC	1 cut(s)	866
BstSCI	CCNGG	2 cut(s)	696, 811
BstSLI	GKGCMC	1 cut(s)	101
BstV1I	GCAGC	2 cut(s)	299, 784
BstV2I	GAAGAC	1 cut(s)	603
BsuI	GTATCC	1 cut(s)	794
BsuRI	GGCC	2 cut(s)	33, 484
BtsCI	GGATG	3 cut(s)	205, 350, 614
Cfr13I	GGNCC	2 cut(s)	173, 584
Csp6I	GTAC	3 cut(s)	130, 205, 446
CviAII	CATG	2 cut(s)	363, 909
CviQI	GTAC	3 cut(s)	130, 205, 446
Eco147I	AGGCCT	1 cut(s)	484
Eco47I	GGWCC	2 cut(s)	173, 584
Eco91I	GGTNACC	1 cut(s)	866
EcoO65I	GGTNACC	1 cut(s)	866
EcoRII	CCWGG	1 cut(s)	811
FaeI	CATG	2 cut(s)	366, 912
FaiI	YATR	9 cut(s)	62, 76, 78, 91, 93, 272, 364, 672, 910
FaqI	GGGAC	1 cut(s)	159
FatI	CATG	2 cut(s)	362, 908
FauNDI	CATATG	2 cut(s)	76, 91
Fnu4HI	GCNGC	2 cut(s)	288, 798
FokI	GGATG	3 cut(s)	212, 337, 601
Fsp4HI	GCNGC	2 cut(s)	288, 798
FspBI	CTAG	3 cut(s)	246, 467, 480
GluI	GCNGC	2 cut(s)	288, 798
GsaI	CCCAGC	1 cut(s)	534
GsuI	CTGGAG	2 cut(s)	43, 795
HaeIII	GGCC	2 cut(s)	33, 484
HapII	CCGG	1 cut(s)	698
Hin1II	CATG	2 cut(s)	366, 912
HincII	GTYRAC	1 cut(s)	769
HindII	GTYRAC	1 cut(s)	769
HindIII	AAGCTT	1 cut(s)	377
HinfI	GANTC	3 cut(s)	323, 608, 757
HpaII	CCGG	1 cut(s)	698
HphI	GGTGA	3 cut(s)	235, 344, 833
Hpy166II	GTNNAC	3 cut(s)	460, 769, 903
Hpy188I	TCNGA	1 cut(s)	894
Hpy188III	TCNNGA	1 cut(s)	47
Hpy8I	GTNNAC	3 cut(s)	460, 769, 903
Hpy99I	CGWCG	1 cut(s)	638
HpyAV	CCTTC	3 cut(s)	421, 641, 689
HpyCH4III	ACNGT	3 cut(s)	209, 445, 634
HpyCH4V	TGCA	8 cut(s)	89, 147, 287, 362, 407, 518, 728, 828
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 287, 806
Hsp92II	CATG	2 cut(s)	366, 912
LmnI	GCTCC	1 cut(s)	814
Lsp1109I	GCAGC	2 cut(s)	299, 784
LweI	GCATC	6 cut(s)	8, 156, 256, 359, 527, 556
MaeI	CTAG	3 cut(s)	246, 467, 480
MaeIII	GTNAC	5 cut(s)	235, 332, 394, 688, 866
MboII	GAAGA	2 cut(s)	603, 656
MfeI	CAATTG	1 cut(s)	240
MhlI	GDGCHC	1 cut(s)	101
MluCI	AATT	5 cut(s)	240, 420, 546, 683, 704
MlyI	GAGTC	2 cut(s)	617, 751
MmeI	TCCRAC	2 cut(s)	177, 562
MseI	TTAA	4 cut(s)	423, 489, 507, 789
MspA1I	CMGCKG	1 cut(s)	104
MspCI	CTTAAG	1 cut(s)	488
MspI	CCGG	1 cut(s)	698
MspR9I	CCNGG	2 cut(s)	698, 813
MunI	CAATTG	1 cut(s)	240
Mva1269I	GAATGC	1 cut(s)	730
MvaI	CCWGG	1 cut(s)	813
MwoI	GCNNNNNNNGC	3 cut(s)	86, 287, 806
NciI	CCSGG	1 cut(s)	698
NdeI	CATATG	2 cut(s)	76, 91
NlaIII	CATG	2 cut(s)	366, 912
NlaIV	GGNNCC	1 cut(s)	175
NmuCI	GTSAC	1 cut(s)	332
PceI	AGGCCT	1 cut(s)	484
PctI	GAATGC	1 cut(s)	730
PfeI	GAWTC	1 cut(s)	323
PflMI	CCANNNNNTGG	1 cut(s)	818
PkrI	GCNGC	2 cut(s)	289, 799
PleI	GAGTC	2 cut(s)	616, 751
PpsI	GAGTC	2 cut(s)	616, 751
PshAI	GACNNNNGTC	1 cut(s)	632
Psp6I	CCWGG	1 cut(s)	811
PspEI	GGTNACC	1 cut(s)	866
PspFI	CCCAGC	1 cut(s)	530
PspGI	CCWGG	1 cut(s)	811
PspN4I	GGNNCC	1 cut(s)	175
PspPI	GGNCC	2 cut(s)	173, 584
PvuII	CAGCTG	1 cut(s)	104
RsaI	GTAC	3 cut(s)	131, 206, 447
RsaNI	GTAC	3 cut(s)	130, 205, 446
SaqAI	TTAA	4 cut(s)	423, 489, 507, 789
SatI	GCNGC	2 cut(s)	288, 798
Sau96I	GGNCC	2 cut(s)	173, 584
SchI	GAGTC	2 cut(s)	617, 751
ScrFI	CCNGG	2 cut(s)	698, 813
SduI	GDGCHC	1 cut(s)	101
SfaNI	GCATC	6 cut(s)	8, 156, 256, 359, 527, 556
SinI	GGWCC	2 cut(s)	173, 584
SmlI	CTYRAG	1 cut(s)	488
SmoI	CTYRAG	1 cut(s)	488
Sse9I	AATT	5 cut(s)	240, 420, 546, 683, 704
SseBI	AGGCCT	1 cut(s)	484
SspMI	CTAG	3 cut(s)	246, 467, 480
StuI	AGGCCT	1 cut(s)	484
StyD4I	CCNGG	2 cut(s)	696, 811
TaaI	ACNGT	3 cut(s)	209, 445, 634
TaqI	TCGA	2 cut(s)	573, 636
TasI	AATT	5 cut(s)	240, 420, 546, 683, 704
TatI	WGTACW	2 cut(s)	129, 445
TfiI	GAWTC	1 cut(s)	323
Tru1I	TTAA	4 cut(s)	423, 489, 507, 789
Tru9I	TTAA	4 cut(s)	423, 489, 507, 789
TseFI	GTSAC	1 cut(s)	332
TseI	GCWGC	2 cut(s)	287, 797
Tsp45I	GTSAC	1 cut(s)	332
TspDTI	ATGAA	1 cut(s)	603
TspGWI	ACGGA	1 cut(s)	246
Van91I	CCANNNNNTGG	1 cut(s)	818
Vha464I	CTTAAG	1 cut(s)	488
VpaK11BI	GGWCC	2 cut(s)	173, 584
XspI	CTAG	3 cut(s)	246, 467, 480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.