RLG00000007050

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
N/A
Physical Location & Seq
Reverse (-)
13056628 .. 13064890
8263 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007050

Sequence Viewer

Length: 1449 bp
ATGGGAAAAGCCATTTACGAATCCGATCAACATGATGAAACCACCTCTCTGGAACTATCAAATGTAGCAGAAGATGTGTGTTCTTCACCTAAAATATTCTTGATTCAAATAAAGCCACACGCTTCAAGAGAGTATTCAAGTTCACCCCAGATTGTTGGTCAATTGAGAAGAAATGTGGAATCCTTGCTTGAAAAGCTACTTAAGGTGCAGGACCCCTGTTTCTATAGTTATGGTTTTATTATGTCTCTCAGAGCTATTCTGCCATGGTTTAGTCATCAAAGAATTATTGGGGACAAAGTAGCACTACCTATTCCTCCAGATCTGTATAATGACAATAAATGGATAGGATTCACTCTCCATGTTTCTTTCACTCTACCTCCAGGAGCTAAATCCAGCGAGAATAACCCATTGGAGAATATAATTGGTCGTTTTTTCTCATTGCAAAGGAGAGTTCTTGCCTTGCAAAAGACTTCCAGTGATTTGAACTCCACTGTTCGTCAAGTAAATAATTTCCTCATACTTGCTGATATTCCATTCACTGATCCATTGAAGAAAAGAGATTTAGTAATCAAGTGGAAAAGAAACCTTCACCTCTTGCTTCAGCAGCTTTTCATGCATTCTCTCTCCTTAAACGTTACTCTCAATTTTGGTGGAGAAATCATTAATGTACAGGATTTTGATCCTTACTCCAAGTATGATTGTTGTTTCCATCGAAAGGGTATTCCAGAGGAATTCACAATTAGAGGTGAAAGTTCACGCACACAACGAGTGATGTTCTCACTTCCTCCAAATTTGGAAACCGATGTCAATTGGATGGGATTGGTTGTATGTGCTGCAGTTTCAGTCCACCAGCATCCAGTTGCCGGCTACAATCTCGGTTTAGGACCCTCTCATGATCTTACGTGTGATCTCATCAGTTCTGAAGGTTCAGTAATAAGTGAAGAGGGTACTCGCATCTCTGAGAACAAGCAAGGTGTGCAAGAATTCAAGCAAGCAGTACTGATACAGCAGAGTACTTCATTATTTGGCGATGTGGATCACGTCTGTCAATTTCTCCAAGATGATGATATCAATAACAAACCGCCAAATCATGCAGATGAGAAAGACTTTAATGGGACTAGCAGCGCCTTGTGTAAGCACTCTGAGTATGAAAGCACGAGAACACCAATTTGTCAGGATGAAACCAGTGGATGTACTTCAAGTAGCTCGGCCTCAAGTTCAATTAAGATTGTTGGTCAATTGGCAAGAAATGTAGAATCATTGCTCGCACAACTGTTTCAGGGAGGCTATGCACGTTATTATGATTATGGTTTTATATTATCACGTGACGCCTTTTTGCCGTGGTTTAATCATCAAAGCATTGGGAACCAAGTACAGTTACCTCTTCCTCCACATTTATATAATGATGAGACATGGGTAGGATTTTCTCTGACTTCAACCGTTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

483

Amino Acids

54.18

Weight (kDa)

5.68

Isoelectric Point (pI)

44.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 1082
AclI AACGTT 1 cut(s) 633
AclWI GGATC 3 cut(s) 536, 674, 1044
AcsI RAATTY 3 cut(s) 731, 790, 983
AcuI CTGAAG 2 cut(s) 584, 942
AcvI CACGTG 1 cut(s) 1325
AcyI GRCGYC 1 cut(s) 1329
AfaI GTAC 6 cut(s) 669, 949, 999, 1015, 1195, 1374
AfiI CCNNNNNNNGG 2 cut(s) 715, 863
AflII CTTAAG 1 cut(s) 200
AflIII ACRYGT 1 cut(s) 902
AjiI CACGTC 1 cut(s) 1042
AjnI CCWGG 1 cut(s) 379
AjuI GAANNNNNNNTTGG 2 cut(s) 392, 424
AluBI AGCT 5 cut(s) 196, 254, 386, 607, 1206
AluI AGCT 5 cut(s) 196, 254, 386, 607, 1206
Alw26I GTCTC 2 cut(s) 249, 1403
AlwI GGATC 3 cut(s) 536, 674, 1044
AoxI GGCC 1 cut(s) 1209
ApeKI GCWGC 3 cut(s) 604, 833, 1122
ApoI RAATTY 3 cut(s) 731, 790, 983
AseI ATTAAT 1 cut(s) 663
AspLEI GCGC 1 cut(s) 1127
AspS9I GGNCC 2 cut(s) 211, 884
AsuHPI GGTGA 4 cut(s) 78, 135, 581, 758
AvaII GGWCC 2 cut(s) 211, 884
BauI CACGAG 1 cut(s) 1156
BbrPI CACGTG 1 cut(s) 1325
BbvI GCAGC 3 cut(s) 616, 820, 1134
BccI CCATC 2 cut(s) 717, 808
BceAI ACGGC 1 cut(s) 1324
BciT130I CCWGG 1 cut(s) 381
BcoDI GTCTC 2 cut(s) 249, 1403
BfaI CTAG 1 cut(s) 1119
BfmI CTRYAG 2 cut(s) 223, 834
BfoI RGCGCY 1 cut(s) 1128
BfrI CTTAAG 1 cut(s) 200
BglII AGATCT 1 cut(s) 319
BisI GCNGC 3 cut(s) 605, 834, 1123
BlsI GCNGC 3 cut(s) 606, 835, 1124
BmcAI AGTACT 2 cut(s) 999, 1015
Bme1390I CCNGG 1 cut(s) 381
Bme18I GGWCC 2 cut(s) 211, 884
BmgBI CACGTC 1 cut(s) 1042
BmgT120I GGNCC 2 cut(s) 211, 884
BmiI GGNNCC 3 cut(s) 213, 886, 1367
BmrFI CCNGG 1 cut(s) 381
BmsI GCATC 2 cut(s) 862, 963
BpmI CTGGAG 2 cut(s) 300, 363
BpuEI CTTGAG 1 cut(s) 1198
BsaAI YACGTR 2 cut(s) 903, 1325
BsaBI GATNNNNATC 2 cut(s) 678, 1035
BsaHI GRCGYC 1 cut(s) 1329
BsaJI CCNNGG 2 cut(s) 263, 1340
BsaXI ACNNNNNCTCC 2 cut(s) 361, 391
Bsc4I CCNNNNNNNGG 2 cut(s) 715, 863
Bse118I RCCGGY 1 cut(s) 863
Bse1I ACTGG 3 cut(s) 474, 857, 1185
Bse3DI GCAATG 2 cut(s) 437, 1259
Bse8I GATNNNNATC 2 cut(s) 678, 1035
BseBI CCWGG 1 cut(s) 381
BseDI CCNNGG 2 cut(s) 263, 1340
BseGI GGATG 4 cut(s) 819, 853, 1183, 1196
BseJI GATNNNNATC 2 cut(s) 678, 1035
BseLI CCNNNNNNNGG 2 cut(s) 715, 863
BseMI GCAATG 2 cut(s) 437, 1259
BseMII CTCAG 3 cut(s) 262, 951, 1134
BseNI ACTGG 3 cut(s) 474, 857, 1185
BseXI GCAGC 3 cut(s) 616, 820, 1134
BsgI GTGCAG 1 cut(s) 227
BshFI GGCC 1 cut(s) 1211
BsiSI CCGG 1 cut(s) 864
BslFI GGGAC 2 cut(s) 305, 1129
BslI CCNNNNNNNGG 2 cut(s) 715, 863
BsmAI GTCTC 2 cut(s) 249, 1403
BsmFI GGGAC 2 cut(s) 305, 1129
BsmI GAATGC 1 cut(s) 616
BsnI GGCC 1 cut(s) 1211
Bsp1407I TGTACA 1 cut(s) 667
Bsp143I GATC 7 cut(s) 25, 319, 541, 679, 895, 907, 1036
Bsp19I CCATGG 1 cut(s) 263
BspACI CCGC 1 cut(s) 1082
BspANI GGCC 1 cut(s) 1211
BspCNI CTCAG 3 cut(s) 261, 952, 1135
BspHI TCATGA 1 cut(s) 892
BspLI GGNNCC 3 cut(s) 213, 886, 1367
BspMAI CTGCAG 1 cut(s) 838
BspPI GGATC 3 cut(s) 536, 674, 1044
BspTI CTTAAG 1 cut(s) 200
BsrDI GCAATG 2 cut(s) 437, 1259
BsrFI RCCGGY 1 cut(s) 863
BsrGI TGTACA 1 cut(s) 667
BsrI ACTGG 3 cut(s) 474, 857, 1185
BssAI RCCGGY 1 cut(s) 863
BssECI CCNNGG 2 cut(s) 263, 1340
BssMI GATC 7 cut(s) 25, 319, 541, 679, 895, 907, 1036
BssNI GRCGYC 1 cut(s) 1329
BssSI CACGAG 1 cut(s) 1156
BssT1I CCWWGG 1 cut(s) 263
Bst2BI CACGAG 1 cut(s) 1156
Bst2UI CCWGG 1 cut(s) 381
Bst4CI ACNGT 4 cut(s) 493, 1275, 1377, 1441
Bst6I CTCTTC 2 cut(s) 936, 1389
BstACI GRCGYC 1 cut(s) 1329
BstAFI CTTAAG 1 cut(s) 200
BstAPI GCANNNNNTGC 1 cut(s) 976
BstAUI TGTACA 1 cut(s) 667
BstBAI YACGTR 2 cut(s) 903, 1325
BstC8I GCNNGC 3 cut(s) 865, 993, 1266
BstDEI CTNAG 3 cut(s) 248, 960, 1143
BstDSI CCRYGG 2 cut(s) 263, 1340
BstF5I GGATG 4 cut(s) 819, 853, 1183, 1196
BstH2I RGCGCY 1 cut(s) 1128
BstHHI GCGC 1 cut(s) 1127
BstKTI GATC 7 cut(s) 28, 322, 544, 682, 898, 910, 1039
BstMAI GTCTC 2 cut(s) 249, 1403
BstMBI GATC 7 cut(s) 25, 319, 541, 679, 895, 907, 1036
BstMWI GCNNNNNNNGC 4 cut(s) 193, 604, 613, 976
BstNI CCWGG 1 cut(s) 381
BstSCI CCNGG 1 cut(s) 379
BstSFI CTRYAG 2 cut(s) 223, 834
BstV1I GCAGC 3 cut(s) 616, 820, 1134
BstX2I RGATCY 1 cut(s) 319
BstXI CCANNNNNNTGG 2 cut(s) 49, 155
BstYI RGATCY 1 cut(s) 319
BsuRI GGCC 1 cut(s) 1211
BtgI CCRYGG 2 cut(s) 263, 1340
BtgZI GCGATG 1 cut(s) 1044
BtrI CACGTC 1 cut(s) 1042
BtsCI GGATG 4 cut(s) 819, 853, 1183, 1196
BtsIMutI CAGTG 4 cut(s) 481, 489, 537, 1192
Cac8I GCNNGC 3 cut(s) 865, 993, 1266
CciI TCATGA 1 cut(s) 892
CfoI GCGC 1 cut(s) 1127
Cfr10I RCCGGY 1 cut(s) 863
Cfr13I GGNCC 2 cut(s) 211, 884
CseI GACGC 1 cut(s) 1337
Csp6I GTAC 6 cut(s) 668, 948, 998, 1014, 1194, 1373
CspCI CAANNNNNGTGG 2 cut(s) 631, 666
CviAII CATG 7 cut(s) 32, 264, 359, 613, 893, 1091, 1413
CviQI GTAC 6 cut(s) 668, 948, 998, 1014, 1194, 1373
DdeI CTNAG 3 cut(s) 248, 960, 1143
DpnI GATC 7 cut(s) 27, 321, 543, 681, 897, 909, 1038
DpnII GATC 7 cut(s) 25, 319, 541, 679, 895, 907, 1036
Eam1104I CTCTTC 2 cut(s) 936, 1389
EarI CTCTTC 2 cut(s) 936, 1389
Eco130I CCWWGG 1 cut(s) 263
Eco32I GATATC 1 cut(s) 1069
Eco47I GGWCC 2 cut(s) 211, 884
Eco57I CTGAAG 2 cut(s) 584, 942
Eco72I CACGTG 1 cut(s) 1325
EcoO109I RGGNCCY 2 cut(s) 211, 884
EcoRI GAATTC 2 cut(s) 731, 983
EcoRII CCWGG 1 cut(s) 379
EcoRV GATATC 1 cut(s) 1069
EcoT14I CCWWGG 1 cut(s) 263
EcoT22I ATGCAT 1 cut(s) 618
ErhI CCWWGG 1 cut(s) 263
FaeI CATG 7 cut(s) 35, 267, 362, 616, 896, 1094, 1416
FaqI GGGAC 2 cut(s) 305, 1129
FatI CATG 7 cut(s) 31, 263, 358, 612, 892, 1090, 1412
Fnu4HI GCNGC 3 cut(s) 605, 834, 1123
FokI GGATG 4 cut(s) 826, 840, 1190, 1203
Fsp4HI GCNGC 3 cut(s) 605, 834, 1123
FspBI CTAG 1 cut(s) 1119
GlaI GCGC 1 cut(s) 1126
GluI GCNGC 3 cut(s) 605, 834, 1123
GsuI CTGGAG 2 cut(s) 300, 363
HaeII RGCGCY 1 cut(s) 1128
HaeIII GGCC 1 cut(s) 1211
HapII CCGG 1 cut(s) 864
HgaI GACGC 1 cut(s) 1337
HhaI GCGC 1 cut(s) 1127
Hin1I GRCGYC 1 cut(s) 1329
Hin1II CATG 7 cut(s) 35, 267, 362, 616, 896, 1094, 1416
Hin6I GCGC 1 cut(s) 1125
HinP1I GCGC 1 cut(s) 1125
HinfI GANTC 5 cut(s) 20, 103, 179, 348, 1256
HpaII CCGG 1 cut(s) 864
HphI GGTGA 4 cut(s) 78, 135, 581, 758
Hpy166II GTNNAC 3 cut(s) 143, 755, 847
Hpy188I TCNGA 6 cut(s) 25, 251, 922, 961, 1144, 1431
Hpy188III TCNNGA 7 cut(s) 50, 100, 126, 317, 725, 893, 1175
Hpy8I GTNNAC 3 cut(s) 143, 755, 847
HpyAV CCTTC 2 cut(s) 596, 917
HpyCH4III ACNGT 4 cut(s) 493, 1275, 1377, 1441
HpyCH4IV ACGT 5 cut(s) 633, 902, 1041, 1294, 1324
HpyCH4V TGCA 8 cut(s) 208, 442, 463, 616, 836, 979, 1094, 1292
HpyF10VI GCNNNNNNNGC 4 cut(s) 193, 604, 613, 976
HpyF3I CTNAG 3 cut(s) 248, 960, 1143
HpySE526I ACGT 5 cut(s) 633, 902, 1041, 1294, 1324
Hsp92I GRCGYC 1 cut(s) 1329
Hsp92II CATG 7 cut(s) 35, 267, 362, 616, 896, 1094, 1416
HspAI GCGC 1 cut(s) 1125
KroI GCCGGC 1 cut(s) 863
KroNI GCCGGC 1 cut(s) 865
Kzo9I GATC 7 cut(s) 25, 319, 541, 679, 895, 907, 1036
LmnI GCTCC 1 cut(s) 383
Lsp1109I GCAGC 3 cut(s) 616, 820, 1134
LweI GCATC 2 cut(s) 862, 963
MaeI CTAG 1 cut(s) 1119
MaeII ACGT 5 cut(s) 633, 902, 1041, 1294, 1324
MaeIII GTNAC 3 cut(s) 634, 1325, 1377
MalI GATC 7 cut(s) 27, 321, 543, 681, 897, 909, 1038
MboI GATC 7 cut(s) 25, 319, 541, 679, 895, 907, 1036
MboII GAAGA 6 cut(s) 75, 83, 180, 562, 953, 1376
MfeI CAATTG 3 cut(s) 161, 808, 1238
MflI RGATCY 1 cut(s) 319
Mph1103I ATGCAT 1 cut(s) 618
MroNI GCCGGC 1 cut(s) 863
MseI TTAA 6 cut(s) 201, 629, 663, 1110, 1224, 1347
MslI CAYNNNNRTG 1 cut(s) 1095
MspCI CTTAAG 1 cut(s) 200
MspI CCGG 1 cut(s) 864
MspR9I CCNGG 1 cut(s) 381
MunI CAATTG 3 cut(s) 161, 808, 1238
Mva1269I GAATGC 1 cut(s) 616
MvaI CCWGG 1 cut(s) 381
MwoI GCNNNNNNNGC 4 cut(s) 193, 604, 613, 976
NaeI GCCGGC 1 cut(s) 865
NcoI CCATGG 1 cut(s) 263
NdeII GATC 7 cut(s) 25, 319, 541, 679, 895, 907, 1036
NgoMIV GCCGGC 1 cut(s) 863
NlaIII CATG 7 cut(s) 35, 267, 362, 616, 896, 1094, 1416
NlaIV GGNNCC 3 cut(s) 213, 886, 1367
NmeAIII GCCGAG 1 cut(s) 1187
NmuCI GTSAC 1 cut(s) 1325
NsiI ATGCAT 1 cut(s) 618
PagI TCATGA 1 cut(s) 892
PcsI WCGNNNNNNNCGW 1 cut(s) 763
PctI GAATGC 1 cut(s) 616
PdiI GCCGGC 1 cut(s) 865
PfeI GAWTC 5 cut(s) 20, 103, 179, 348, 1256
PfoI TCCNGGA 1 cut(s) 379
PkrI GCNGC 3 cut(s) 606, 835, 1124
PmaCI CACGTG 1 cut(s) 1325
PmlI CACGTG 1 cut(s) 1325
Ppu21I YACGTR 2 cut(s) 903, 1325
PpuMI RGGWCCY 2 cut(s) 211, 884
PshBI ATTAAT 1 cut(s) 663
Psp1406I AACGTT 1 cut(s) 633
Psp5II RGGWCCY 2 cut(s) 211, 884
Psp6I CCWGG 1 cut(s) 379
PspCI CACGTG 1 cut(s) 1325
PspGI CCWGG 1 cut(s) 379
PspN4I GGNNCC 3 cut(s) 213, 886, 1367
PspPI GGNCC 2 cut(s) 211, 884
PspPPI RGGWCCY 2 cut(s) 211, 884
PstI CTGCAG 1 cut(s) 838
PsuI RGATCY 1 cut(s) 319
RsaI GTAC 6 cut(s) 669, 949, 999, 1015, 1195, 1374
RsaNI GTAC 6 cut(s) 668, 948, 998, 1014, 1194, 1373
RseI CAYNNNNRTG 1 cut(s) 1095
SaqAI TTAA 6 cut(s) 201, 629, 663, 1110, 1224, 1347
SatI GCNGC 3 cut(s) 605, 834, 1123
Sau3AI GATC 7 cut(s) 25, 319, 541, 679, 895, 907, 1036
Sau96I GGNCC 2 cut(s) 211, 884
ScaI AGTACT 2 cut(s) 999, 1015
ScrFI CCNGG 1 cut(s) 381
SfaNI GCATC 2 cut(s) 862, 963
SfcI CTRYAG 2 cut(s) 223, 834
SinI GGWCC 2 cut(s) 211, 884
SmiMI CAYNNNNRTG 1 cut(s) 1095
SmlI CTYRAG 2 cut(s) 200, 1213
SmoI CTYRAG 2 cut(s) 200, 1213
SsiI CCGC 1 cut(s) 1082
SspI AATATT 1 cut(s) 96
SspMI CTAG 1 cut(s) 1119
StyD4I CCNGG 1 cut(s) 379
StyI CCWWGG 1 cut(s) 263
TaaI ACNGT 4 cut(s) 493, 1275, 1377, 1441
TaiI ACGT 5 cut(s) 636, 905, 1044, 1297, 1327
TaqI TCGA 1 cut(s) 712
TatI WGTACW 5 cut(s) 667, 997, 1013, 1193, 1372
TfiI GAWTC 5 cut(s) 20, 103, 179, 348, 1256
Tru1I TTAA 6 cut(s) 201, 629, 663, 1110, 1224, 1347
Tru9I TTAA 6 cut(s) 201, 629, 663, 1110, 1224, 1347
TscAI CASTG 4 cut(s) 481, 496, 544, 1192
TseFI GTSAC 1 cut(s) 1325
TseI GCWGC 3 cut(s) 604, 833, 1122
Tsp45I GTSAC 1 cut(s) 1325
TspDTI ATGAA 5 cut(s) 51, 601, 1008, 1164, 1194
TspRI CASTG 4 cut(s) 481, 496, 544, 1192
Vha464I CTTAAG 1 cut(s) 200
VpaK11BI GGWCC 2 cut(s) 211, 884
VspI ATTAAT 1 cut(s) 663
XapI RAATTY 3 cut(s) 731, 790, 983
XspI CTAG 1 cut(s) 1119
ZrmI AGTACT 2 cut(s) 999, 1015
Zsp2I ATGCAT 1 cut(s) 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.