RLG00000007390
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
N/A
Physical Location & Seq
Reverse (-)
16427331 .. 16427949
619 bp
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UTR
Exon/CDS
Intron
RLM00000007390

Sequence Viewer

Length: 414 bp
ATGAAAATTATTCTAATTTCAGAAGCCACCAATGGTTTCAGCTCAGAGAATTTGGTTGGGAAAGGAGGATATGCAGAGGTGTATAGAAGTGTTCTGAAAGGTAATGAGGAAATTGTTATGATGAGGATCACAAAAACTGTGACTGATGAAAGGAAAGAGAAGGAGTTCTCGAATGAGATTGGAACTATTGGCCATGTTTGCCATCCAAGTGTGTTGTCACTTGTGGGTTGTTACATTGACAATGGCCTTTATCTCATCTTCCATTTCTCCTCCAGAGGCTCTGTTGCTTCTCTACTCCATGATGAGAGTTTGCCACCTAGGAATTGGAAATCTGAGCTTCTGATTTCTTTTGATTACCTCATCAAAACCCTCTGCGGTCACACAAAGTACGTTGGAAGAAACATGGAGAGTTAG

Protein Analysis

138

Amino Acids

15.36

Weight (kDa)

6.51

Isoelectric Point (pI)

24.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 14 - 105 7.4e-09 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 16 - 106 6.1e-10 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 375
AclWI GGATC 1 cut(s) 134
AcoI YGGCCR 1 cut(s) 190
AcsI RAATTY 1 cut(s) 49
AfaI GTAC 1 cut(s) 389
AluBI AGCT 2 cut(s) 42, 337
AluI AGCT 2 cut(s) 42, 337
AlwI GGATC 1 cut(s) 134
AoxI GGCC 2 cut(s) 190, 244
ApoI RAATTY 1 cut(s) 49
Asp700I GAANNNNTTC 1 cut(s) 164
AspA2I CCTAGG 1 cut(s) 317
AvrII CCTAGG 1 cut(s) 317
BalI TGGCCA 1 cut(s) 192
BccI CCATC 1 cut(s) 210
BfaI CTAG 1 cut(s) 318
BlnI CCTAGG 1 cut(s) 317
BpmI CTGGAG 1 cut(s) 256
BsaBI GATNNNNATC 1 cut(s) 125
BsaJI CCNNGG 1 cut(s) 317
Bse8I GATNNNNATC 1 cut(s) 125
BseDI CCNNGG 1 cut(s) 317
BseGI GGATG 1 cut(s) 202
BseJI GATNNNNATC 1 cut(s) 125
BseMII CTCAG 2 cut(s) 57, 324
BseRI GAGGAG 1 cut(s) 259
BshFI GGCC 2 cut(s) 192, 246
BsnI GGCC 2 cut(s) 192, 246
Bsp143I GATC 1 cut(s) 126
BspACI CCGC 1 cut(s) 375
BspANI GGCC 2 cut(s) 192, 246
BspCNI CTCAG 2 cut(s) 56, 325
BspPI GGATC 1 cut(s) 134
BssECI CCNNGG 1 cut(s) 317
BssMI GATC 1 cut(s) 126
BssT1I CCWWGG 1 cut(s) 317
Bst4CI ACNGT 1 cut(s) 139
BstDEI CTNAG 2 cut(s) 43, 333
BstF5I GGATG 1 cut(s) 202
BstKTI GATC 1 cut(s) 129
BstMBI GATC 1 cut(s) 126
BstMWI GCNNNNNNNGC 1 cut(s) 198
BsuRI GGCC 2 cut(s) 192, 246
BtsCI GGATG 1 cut(s) 202
Csp6I GTAC 1 cut(s) 388
CviAII CATG 3 cut(s) 194, 299, 403
CviJI RGCY 6 cut(s) 26, 42, 192, 246, 279, 337
CviKI_1 RGCY 6 cut(s) 26, 42, 192, 246, 279, 337
CviQI GTAC 1 cut(s) 388
DdeI CTNAG 2 cut(s) 43, 333
DpnI GATC 1 cut(s) 128
DpnII GATC 1 cut(s) 126
EaeI YGGCCR 1 cut(s) 190
Eco130I CCWWGG 1 cut(s) 317
EcoT14I CCWWGG 1 cut(s) 317
ErhI CCWWGG 1 cut(s) 317
FaeI CATG 3 cut(s) 197, 302, 406
FaiI YATR 6 cut(s) 72, 84, 119, 195, 300, 404
FatI CATG 3 cut(s) 193, 298, 402
FokI GGATG 1 cut(s) 189
FspBI CTAG 1 cut(s) 318
GsuI CTGGAG 1 cut(s) 256
HaeIII GGCC 2 cut(s) 192, 246
Hin1II CATG 3 cut(s) 197, 302, 406
Hpy188I TCNGA 5 cut(s) 22, 46, 96, 334, 342
Hpy188III TCNNGA 2 cut(s) 169, 273
HpyAV CCTTC 1 cut(s) 154
HpyCH4III ACNGT 1 cut(s) 139
HpyCH4IV ACGT 1 cut(s) 390
HpyCH4V TGCA 1 cut(s) 74
HpyF10VI GCNNNNNNNGC 1 cut(s) 198
HpyF3I CTNAG 2 cut(s) 43, 333
HpySE526I ACGT 1 cut(s) 390
Hsp92II CATG 3 cut(s) 197, 302, 406
Kzo9I GATC 1 cut(s) 126
LpnPI CCDG 1 cut(s) 286
MaeI CTAG 1 cut(s) 318
MaeII ACGT 1 cut(s) 390
MaeIII GTNAC 4 cut(s) 139, 216, 230, 377
MalI GATC 1 cut(s) 128
MboI GATC 1 cut(s) 126
MboII GAAGA 2 cut(s) 250, 408
MlsI TGGCCA 1 cut(s) 192
MluCI AATT 5 cut(s) 6, 15, 49, 111, 322
MluNI TGGCCA 1 cut(s) 192
MmeI TCCRAC 1 cut(s) 373
MnlI CCTC 8 cut(s) 59, 70, 100, 117, 269, 280, 368, 380
Mox20I TGGCCA 1 cut(s) 192
MroXI GAANNNNTTC 1 cut(s) 164
MscI TGGCCA 1 cut(s) 192
MslI CAYNNNNRTG 1 cut(s) 207
Msp20I TGGCCA 1 cut(s) 192
MwoI GCNNNNNNNGC 1 cut(s) 198
NdeII GATC 1 cut(s) 126
NlaIII CATG 3 cut(s) 197, 302, 406
NmuCI GTSAC 3 cut(s) 139, 216, 377
PdmI GAANNNNTTC 1 cut(s) 164
RsaI GTAC 1 cut(s) 389
RsaNI GTAC 1 cut(s) 388
RseI CAYNNNNRTG 1 cut(s) 207
Sau3AI GATC 1 cut(s) 126
SetI ASST 7 cut(s) 44, 81, 103, 319, 339, 360, 393
SgeI CNNG 7 cut(s) 181, 206, 219, 233, 285, 311, 330
SmiMI CAYNNNNRTG 1 cut(s) 207
Sse9I AATT 5 cut(s) 6, 15, 49, 111, 322
SsiI CCGC 1 cut(s) 375
SspMI CTAG 1 cut(s) 318
StyI CCWWGG 1 cut(s) 317
TaaI ACNGT 1 cut(s) 139
TaiI ACGT 1 cut(s) 393
TaqI TCGA 1 cut(s) 170
TasI AATT 5 cut(s) 6, 15, 49, 111, 322
TseFI GTSAC 3 cut(s) 139, 216, 377
Tsp45I GTSAC 3 cut(s) 139, 216, 377
TspDTI ATGAA 2 cut(s) 17, 162
XapI RAATTY 1 cut(s) 49
XcmI CCANNNNNNNNNTGG 1 cut(s) 321
XmaJI CCTAGG 1 cut(s) 317
XmnI GAANNNNTTC 1 cut(s) 164
XspI CTAG 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.