Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

23908041 .. 23908709

Gene Structure 669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007985

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGAGACCTAATTCCACTTCCACTTCCCCCGCTTCCTTTTCAACCTCCTTTGTCTTCTTCGATCTCCCCAAAATCGCTTCCAGCCCAGGCTTTGGCCTCTACTTCGTCCTCTCCAACTCCACCTCTCCCCCCAACGCCCTCGCCAGCCAGCACTTCTATCTCTTCTCAAACGCAACCGAGGTCGTAGCTCCCTTACTCGCCGTCGAATTCGACACGGGCCAAAACCCCCAATTCAACAACCTGGATGGAAACCACATCGGAATCAACCTCAACAACAACATATCGATGCTGAGCGGCGAGAACGTCTGGACTTGGATCAAATTCGACGGACAGAATCTCGAAATCAACATCACCATGGCTTCGGCTAATCTGCCACGACCTTCTCTGCCTACGCTGAGCTTTAAAGACCTGAGGATTGGGAACTACGTGTCGTCGGAGATGTTCGTCGGGTTTTCGGCGTCGAAAATGCAGTGGATTGAGGCGCAGAGAATTTTGGCTTGGAGTTTAAGTGACACTGGGGTTGCTAAAGAGATCAACGTGACCAATTTGCCTGTTTTTGAGCATGAGGCTTCTTCGAAATCCTTATCTAAGGGAGCTGTTGTTACATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase

Protein Analysis

204

Amino Acids

22.18

Weight (kDa)

5.28

Isoelectric Point (pI)

39.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	5 - 183	2.1e-34	Legume lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	92
AccBSI	CCGCTC	1 cut(s)	294
AciI	CCGC	2 cut(s)	30, 294
AclWI	GGATC	1 cut(s)	323
AcsI	RAATTY	3 cut(s)	206, 320, 489
AcyI	GRCGYC	1 cut(s)	458
AfiI	CCNNNNNNNGG	1 cut(s)	92
AflIII	ACRYGT	1 cut(s)	426
AgsI	TTSAA	2 cut(s)	42, 235
AjnI	CCWGG	2 cut(s)	85, 240
AjuI	GAANNNNNNNTTGG	2 cut(s)	481, 513
AluBI	AGCT	3 cut(s)	188, 399, 596
AluI	AGCT	3 cut(s)	188, 399, 596
AlwI	GGATC	1 cut(s)	323
AoxI	GGCC	2 cut(s)	94, 217
ApoI	RAATTY	3 cut(s)	206, 320, 489
AspLEI	GCGC	1 cut(s)	484
AspS9I	GGNCC	1 cut(s)	217
AsuHPI	GGTGA	1 cut(s)	343
AsuII	TTCGAA	1 cut(s)	575
AxyI	CCTNAGG	1 cut(s)	410
BbsI	GAAGAC	1 cut(s)	46
BccI	CCATC	1 cut(s)	239
BceAI	ACGGC	1 cut(s)	185
BciT130I	CCWGG	2 cut(s)	87, 242
BisI	GCNGC	1 cut(s)	295
BlpI	GCTNAGC	2 cut(s)	290, 395
BlsI	GCNGC	1 cut(s)	296
Bme1390I	CCNGG	2 cut(s)	87, 242
BmgT120I	GGNCC	1 cut(s)	217
BmrFI	CCNGG	2 cut(s)	87, 242
BmrI	ACTGGG	1 cut(s)	525
BmsI	GCATC	1 cut(s)	276
BmuI	ACTGGG	1 cut(s)	525
BpiI	GAAGAC	1 cut(s)	46
Bpu1102I	GCTNAGC	2 cut(s)	290, 395
Bpu14I	TTCGAA	1 cut(s)	575
Bsa29I	ATCGAT	1 cut(s)	284
BsaAI	YACGTR	1 cut(s)	427
BsaHI	GRCGYC	1 cut(s)	458
BsaJI	CCNNGG	3 cut(s)	85, 177, 354
BsaXI	ACNNNNNCTCC	3 cut(s)	493, 523, 585
Bsc4I	CCNNNNNNNGG	1 cut(s)	92
Bse1I	ACTGG	1 cut(s)	520
Bse21I	CCTNAGG	1 cut(s)	410
BseBI	CCWGG	2 cut(s)	87, 242
BseCI	ATCGAT	1 cut(s)	284
BseDI	CCNNGG	3 cut(s)	85, 177, 354
BseGI	GGATG	1 cut(s)	250
BseLI	CCNNNNNNNGG	1 cut(s)	92
BseMII	CTCAG	3 cut(s)	281, 386, 401
BseNI	ACTGG	1 cut(s)	520
BshFI	GGCC	2 cut(s)	96, 219
BshVI	ATCGAT	1 cut(s)	284
BslI	CCNNNNNNNGG	1 cut(s)	92
BsnI	GGCC	2 cut(s)	96, 219
Bsp119I	TTCGAA	1 cut(s)	575
Bsp143I	GATC	3 cut(s)	61, 315, 531
Bsp1720I	GCTNAGC	2 cut(s)	290, 395
Bsp19I	CCATGG	1 cut(s)	354
BspACI	CCGC	2 cut(s)	30, 294
BspANI	GGCC	2 cut(s)	96, 219
BspCNI	CTCAG	3 cut(s)	282, 387, 402
BspDI	ATCGAT	1 cut(s)	284
BspPI	GGATC	1 cut(s)	323
BspT104I	TTCGAA	1 cut(s)	575
BsrBI	CCGCTC	1 cut(s)	294
BsrI	ACTGG	1 cut(s)	520
BssECI	CCNNGG	3 cut(s)	85, 177, 354
BssMI	GATC	3 cut(s)	61, 315, 531
BssNI	GRCGYC	1 cut(s)	458
BssT1I	CCWWGG	1 cut(s)	354
Bst2UI	CCWGG	2 cut(s)	87, 242
Bst6I	CTCTTC	1 cut(s)	167
BstACI	GRCGYC	1 cut(s)	458
BstBAI	YACGTR	1 cut(s)	427
BstBI	TTCGAA	1 cut(s)	575
BstC8I	GCNNGC	2 cut(s)	145, 149
BstDEI	CTNAG	4 cut(s)	290, 395, 410, 588
BstDSI	CCRYGG	1 cut(s)	354
BstF5I	GGATG	1 cut(s)	250
BstHHI	GCGC	1 cut(s)	484
BstKTI	GATC	3 cut(s)	64, 318, 534
BstMBI	GATC	3 cut(s)	61, 315, 531
BstNI	CCWGG	2 cut(s)	87, 242
BstSCI	CCNGG	2 cut(s)	85, 240
BstV2I	GAAGAC	1 cut(s)	46
Bsu15I	ATCGAT	1 cut(s)	284
Bsu36I	CCTNAGG	1 cut(s)	410
BsuRI	GGCC	2 cut(s)	96, 219
BsuTUI	ATCGAT	1 cut(s)	284
BtgI	CCRYGG	1 cut(s)	354
BtsCI	GGATG	1 cut(s)	250
BtsI	GCAGTG	1 cut(s)	476
BtsIMutI	CAGTG	2 cut(s)	476, 513
Cac8I	GCNNGC	2 cut(s)	145, 149
CfoI	GCGC	1 cut(s)	484
Cfr13I	GGNCC	1 cut(s)	217
ClaI	ATCGAT	1 cut(s)	284
CseI	GACGC	1 cut(s)	447
CviAII	CATG	2 cut(s)	355, 563
DdeI	CTNAG	4 cut(s)	290, 395, 410, 588
DpnI	GATC	3 cut(s)	63, 317, 533
DpnII	GATC	3 cut(s)	61, 315, 531
DraI	TTTAAA	1 cut(s)	403
Eam1104I	CTCTTC	1 cut(s)	167
EarI	CTCTTC	1 cut(s)	167
Eco130I	CCWWGG	1 cut(s)	354
Eco81I	CCTNAGG	1 cut(s)	410
EcoRI	GAATTC	1 cut(s)	206
EcoRII	CCWGG	2 cut(s)	85, 240
EcoT14I	CCWWGG	1 cut(s)	354
ErhI	CCWWGG	1 cut(s)	354
FaeI	CATG	2 cut(s)	358, 566
FaiI	YATR	3 cut(s)	281, 356, 564
FatI	CATG	2 cut(s)	354, 562
FauI	CCCGC	1 cut(s)	37
Fnu4HI	GCNGC	1 cut(s)	295
FokI	GGATG	1 cut(s)	257
Fsp4HI	GCNGC	1 cut(s)	295
GlaI	GCGC	1 cut(s)	483
GluI	GCNGC	1 cut(s)	295
HaeIII	GGCC	2 cut(s)	96, 219
HgaI	GACGC	1 cut(s)	447
HhaI	GCGC	1 cut(s)	484
Hin1I	GRCGYC	1 cut(s)	458
Hin1II	CATG	2 cut(s)	358, 566
Hin6I	GCGC	1 cut(s)	482
HinP1I	GCGC	1 cut(s)	482
HinfI	GANTC	2 cut(s)	261, 334
HphI	GGTGA	1 cut(s)	343
Hpy188I	TCNGA	2 cut(s)	260, 436
Hpy188III	TCNNGA	2 cut(s)	307, 338
Hpy99I	CGWCG	5 cut(s)	206, 329, 436, 449, 463
HpyAV	CCTTC	1 cut(s)	390
HpyCH4IV	ACGT	3 cut(s)	303, 426, 537
HpyCH4V	TGCA	1 cut(s)	469
HpyF3I	CTNAG	4 cut(s)	290, 395, 410, 588
HpySE526I	ACGT	3 cut(s)	303, 426, 537
Hsp92I	GRCGYC	1 cut(s)	458
Hsp92II	CATG	2 cut(s)	358, 566
HspAI	GCGC	1 cut(s)	482
Kzo9I	GATC	3 cut(s)	61, 315, 531
LmnI	GCTCC	2 cut(s)	193, 593
LweI	GCATC	1 cut(s)	276
MaeII	ACGT	3 cut(s)	303, 426, 537
MaeIII	GTNAC	3 cut(s)	509, 538, 601
MalI	GATC	3 cut(s)	63, 317, 533
MbiI	CCGCTC	1 cut(s)	294
MboI	GATC	3 cut(s)	61, 315, 531
MboII	GAAGA	4 cut(s)	46, 49, 154, 564
MluCI	AATT	6 cut(s)	10, 206, 230, 320, 489, 544
MmeI	TCCRAC	2 cut(s)	138, 414
MseI	TTAA	3 cut(s)	402, 506, 610
MslI	CAYNNNNRTG	2 cut(s)	284, 353
MspR9I	CCNGG	2 cut(s)	87, 242
MvaI	CCWGG	2 cut(s)	87, 242
NcoI	CCATGG	1 cut(s)	354
NdeII	GATC	3 cut(s)	61, 315, 531
NlaIII	CATG	2 cut(s)	358, 566
NmuCI	GTSAC	2 cut(s)	509, 538
NspV	TTCGAA	1 cut(s)	575
PfeI	GAWTC	2 cut(s)	261, 334
PflMI	CCANNNNNTGG	1 cut(s)	92
PkrI	GCNGC	1 cut(s)	296
Ppu21I	YACGTR	1 cut(s)	427
Psp6I	CCWGG	2 cut(s)	85, 240
PspGI	CCWGG	2 cut(s)	85, 240
PspPI	GGNCC	1 cut(s)	217
RseI	CAYNNNNRTG	2 cut(s)	284, 353
SaqAI	TTAA	3 cut(s)	402, 506, 610
SatI	GCNGC	1 cut(s)	295
Sau3AI	GATC	3 cut(s)	61, 315, 531
Sau96I	GGNCC	1 cut(s)	217
ScrFI	CCNGG	2 cut(s)	87, 242
SfaNI	GCATC	1 cut(s)	276
SfuI	TTCGAA	1 cut(s)	575
SmiMI	CAYNNNNRTG	2 cut(s)	284, 353
Sse9I	AATT	6 cut(s)	10, 206, 230, 320, 489, 544
SsiI	CCGC	2 cut(s)	30, 294
StyD4I	CCNGG	2 cut(s)	85, 240
StyI	CCWWGG	1 cut(s)	354
TaiI	ACGT	3 cut(s)	306, 429, 540
TaqI	TCGA	8 cut(s)	60, 204, 210, 284, 324, 339, 461, 575
TasI	AATT	6 cut(s)	10, 206, 230, 320, 489, 544
TauI	GCSGC	1 cut(s)	297
TfiI	GAWTC	2 cut(s)	261, 334
Tru1I	TTAA	3 cut(s)	402, 506, 610
Tru9I	TTAA	3 cut(s)	402, 506, 610
TscAI	CASTG	2 cut(s)	476, 520
TseFI	GTSAC	2 cut(s)	509, 538
Tsp45I	GTSAC	2 cut(s)	509, 538
TspGWI	ACGGA	1 cut(s)	342
TspRI	CASTG	2 cut(s)	476, 520
Van91I	CCANNNNNTGG	1 cut(s)	92
XapI	RAATTY	3 cut(s)	206, 320, 489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.