Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

26724784 .. 26725649

Gene Structure 866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008187

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGCGCGTCAGTAGCATTAGAAACTTCTCAGTACCCTTTGCTTTAGTGAACTTGGAATCCAACGCCTTCACATTCACTTTCCTCCAATTTGCTTCCCATCCAAAATCTCCGAACTCTTTTGTCATCTTGACGGCTAGCATTATTTCAATGGTGGATATTGAAGAAGCCTCCTCTTCTTCTTTCAGCCATCCATGGAAATACCATGTCTTTCTGAGTTTTGGAGGTGAGGATGAAATAATTTCACAGGTCAAATGTGCAGCGCTTTGCGGCAGAAGGGGATCATCACCTTCATGGATGATCACCTCAGACGAGGAGAAGAAATATCAACAGCACTTCTTCAAGCAATTGAACAGTCAGAGGATAATTATCTTTGCTGAAGCAATCTCAATGAAAGTGACAGAAAGATATTTGGAGGTAACGAAGTACCCAGTTGTAATAGAGTCTCTTGTGCAAAATGTACATAGGCTTCTAGCTGTTGAAGGAAAAGATGATCATATGGTAGGGATATGGGAAACCAATAGTAAGACAACAATTGCAAAAGTTGTCTTTAACTCGATTGCTCAAAAGTTTGATGGGAGTTGTTTTCTGGAAAATGTTAACAGAAAATTCAATGCATTACAGAGGCTTCGTCAAATACAAAACGCTTCTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC TIR

Protein Analysis

218

Amino Acids

24.7

Weight (kDa)

8.76

Isoelectric Point (pI)

43.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	6
AciI	CCGC	1 cut(s)	267
AclWI	GGATC	1 cut(s)	286
AcsI	RAATTY	1 cut(s)	605
AcuI	CTGAAG	1 cut(s)	396
AfaI	GTAC	3 cut(s)	33, 425, 459
AfeI	AGCGCT	1 cut(s)	261
AgsI	TTSAA	6 cut(s)	147, 161, 340, 349, 479, 610
AloI	GAACNNNNNNTCC	2 cut(s)	41, 73
AluBI	AGCT	1 cut(s)	473
AluI	AGCT	1 cut(s)	473
Alw26I	GTCTC	1 cut(s)	447
AlwI	GGATC	1 cut(s)	286
Aor51HI	AGCGCT	1 cut(s)	261
ApeKI	GCWGC	1 cut(s)	257
ApoI	RAATTY	1 cut(s)	605
AspLEI	GCGC	2 cut(s)	6, 262
AsuHPI	GGTGA	3 cut(s)	236, 276, 292
AsuNHI	GCTAGC	1 cut(s)	134
BarI	GAAGNNNNNNTAC	2 cut(s)	450, 482
BbvI	GCAGC	1 cut(s)	269
BccI	CCATC	3 cut(s)	105, 195, 566
BceAI	ACGGC	1 cut(s)	147
BclI	TGATCA	2 cut(s)	297, 490
BcoDI	GTCTC	1 cut(s)	447
BfaI	CTAG	2 cut(s)	135, 470
BfoI	RGCGCY	1 cut(s)	263
BisI	GCNGC	2 cut(s)	258, 268
BlsI	GCNGC	2 cut(s)	259, 269
BmrI	ACTGGG	1 cut(s)	422
BmtI	GCTAGC	1 cut(s)	138
BmuI	ACTGGG	1 cut(s)	422
BsaBI	GATNNNNATC	1 cut(s)	365
BsaJI	CCNNGG	1 cut(s)	191
Bse1I	ACTGG	1 cut(s)	428
Bse8I	GATNNNNATC	1 cut(s)	365
BseDI	CCNNGG	1 cut(s)	191
BseGI	GGATG	4 cut(s)	97, 187, 235, 300
BseJI	GATNNNNATC	1 cut(s)	365
BseMII	CTCAG	3 cut(s)	42, 203, 318
BseNI	ACTGG	1 cut(s)	428
BseRI	GAGGAG	2 cut(s)	160, 326
BseXI	GCAGC	1 cut(s)	269
BsgI	GTGCAG	1 cut(s)	276
Bsh1236I	CGCG	1 cut(s)	6
BsmAI	GTCTC	1 cut(s)	447
Bsp1407I	TGTACA	1 cut(s)	457
Bsp143I	GATC	3 cut(s)	278, 297, 490
Bsp19I	CCATGG	1 cut(s)	191
BspACI	CCGC	1 cut(s)	267
BspCNI	CTCAG	3 cut(s)	41, 204, 317
BspFNI	CGCG	1 cut(s)	6
BspOI	GCTAGC	1 cut(s)	138
BspPI	GGATC	1 cut(s)	286
BsrGI	TGTACA	1 cut(s)	457
BsrI	ACTGG	1 cut(s)	428
BssECI	CCNNGG	1 cut(s)	191
BssMI	GATC	3 cut(s)	278, 297, 490
BssT1I	CCWWGG	1 cut(s)	191
Bst4CI	ACNGT	1 cut(s)	353
Bst6I	CTCTTC	1 cut(s)	178
BstAUI	TGTACA	1 cut(s)	457
BstC8I	GCNNGC	1 cut(s)	136
BstDEI	CTNAG	3 cut(s)	28, 212, 304
BstDSI	CCRYGG	1 cut(s)	191
BstF5I	GGATG	4 cut(s)	97, 187, 235, 300
BstFNI	CGCG	1 cut(s)	6
BstH2I	RGCGCY	1 cut(s)	263
BstHHI	GCGC	2 cut(s)	6, 262
BstKTI	GATC	3 cut(s)	281, 300, 493
BstMAI	GTCTC	1 cut(s)	447
BstMBI	GATC	3 cut(s)	278, 297, 490
BstMWI	GCNNNNNNNGC	1 cut(s)	12
BstUI	CGCG	1 cut(s)	6
BstV1I	GCAGC	1 cut(s)	269
BtgI	CCRYGG	1 cut(s)	191
BtsCI	GGATG	4 cut(s)	97, 187, 235, 300
Cac8I	GCNNGC	1 cut(s)	136
CfoI	GCGC	2 cut(s)	6, 262
Csp6I	GTAC	3 cut(s)	32, 424, 458
CviAII	CATG	3 cut(s)	192, 203, 291
CviJI	RGCY	6 cut(s)	134, 167, 186, 466, 473, 625
CviKI_1	RGCY	6 cut(s)	134, 167, 186, 466, 473, 625
CviQI	GTAC	3 cut(s)	32, 424, 458
DdeI	CTNAG	3 cut(s)	28, 212, 304
DpnI	GATC	3 cut(s)	280, 299, 492
DpnII	GATC	3 cut(s)	278, 297, 490
Eam1104I	CTCTTC	1 cut(s)	178
EarI	CTCTTC	1 cut(s)	178
Eco130I	CCWWGG	1 cut(s)	191
Eco47III	AGCGCT	1 cut(s)	261
Eco57I	CTGAAG	1 cut(s)	396
EcoT14I	CCWWGG	1 cut(s)	191
EcoT22I	ATGCAT	1 cut(s)	616
ErhI	CCWWGG	1 cut(s)	191
FaeI	CATG	3 cut(s)	195, 206, 294
FaiI	YATR	7 cut(s)	193, 204, 292, 462, 495, 497, 508
FatI	CATG	3 cut(s)	191, 202, 290
FauNDI	CATATG	1 cut(s)	495
FbaI	TGATCA	2 cut(s)	297, 490
Fnu4HI	GCNGC	2 cut(s)	258, 268
FokI	GGATG	4 cut(s)	84, 174, 242, 307
Fsp4HI	GCNGC	2 cut(s)	258, 268
FspBI	CTAG	2 cut(s)	135, 470
GlaI	GCGC	2 cut(s)	5, 261
GluI	GCNGC	2 cut(s)	258, 268
HaeII	RGCGCY	1 cut(s)	263
HhaI	GCGC	2 cut(s)	6, 262
Hin1II	CATG	3 cut(s)	195, 206, 294
Hin6I	GCGC	2 cut(s)	4, 260
HinP1I	GCGC	2 cut(s)	4, 260
HincII	GTYRAC	1 cut(s)	598
HindII	GTYRAC	1 cut(s)	598
HinfI	GANTC	2 cut(s)	56, 440
HpaI	GTTAAC	1 cut(s)	598
HphI	GGTGA	3 cut(s)	236, 276, 292
Hpy166II	GTNNAC	2 cut(s)	49, 598
Hpy188I	TCNGA	4 cut(s)	111, 213, 307, 357
Hpy188III	TCNNGA	2 cut(s)	127, 587
Hpy8I	GTNNAC	2 cut(s)	49, 598
HpyAV	CCTTC	4 cut(s)	76, 267, 297, 473
HpyCH4III	ACNGT	1 cut(s)	353
HpyCH4V	TGCA	4 cut(s)	257, 451, 536, 614
HpyF10VI	GCNNNNNNNGC	1 cut(s)	12
HpyF3I	CTNAG	3 cut(s)	28, 212, 304
Hsp92II	CATG	3 cut(s)	195, 206, 294
HspAI	GCGC	2 cut(s)	4, 260
Ksp22I	TGATCA	2 cut(s)	297, 490
KspAI	GTTAAC	1 cut(s)	598
Kzo9I	GATC	3 cut(s)	278, 297, 490
LpnPI	CCDG	3 cut(s)	230, 441, 572
Lsp1109I	GCAGC	1 cut(s)	269
MaeI	CTAG	2 cut(s)	135, 470
MaeIII	GTNAC	2 cut(s)	394, 415
MalI	GATC	3 cut(s)	280, 299, 492
MboI	GATC	3 cut(s)	278, 297, 490
MboII	GAAGA	5 cut(s)	165, 168, 173, 328, 328
MfeI	CAATTG	2 cut(s)	344, 531
MluCI	AATT	6 cut(s)	86, 237, 344, 363, 531, 605
MlyI	GAGTC	1 cut(s)	449
MmeI	TCCRAC	1 cut(s)	84
Mph1103I	ATGCAT	1 cut(s)	616
MseI	TTAA	2 cut(s)	549, 597
MslI	CAYNNNNRTG	1 cut(s)	289
MunI	CAATTG	2 cut(s)	344, 531
MvnI	CGCG	1 cut(s)	6
MwoI	GCNNNNNNNGC	1 cut(s)	12
NcoI	CCATGG	1 cut(s)	191
NdeI	CATATG	1 cut(s)	495
NdeII	GATC	3 cut(s)	278, 297, 490
NheI	GCTAGC	1 cut(s)	134
NlaIII	CATG	3 cut(s)	195, 206, 294
NmuCI	GTSAC	1 cut(s)	394
NsiI	ATGCAT	1 cut(s)	616
PfeI	GAWTC	1 cut(s)	56
PkrI	GCNGC	2 cut(s)	259, 269
PleI	GAGTC	1 cut(s)	448
PpsI	GAGTC	1 cut(s)	448
RsaI	GTAC	3 cut(s)	33, 425, 459
RsaNI	GTAC	3 cut(s)	32, 424, 458
RseI	CAYNNNNRTG	1 cut(s)	289
SaqAI	TTAA	2 cut(s)	549, 597
SatI	GCNGC	2 cut(s)	258, 268
Sau3AI	GATC	3 cut(s)	278, 297, 490
SchI	GAGTC	1 cut(s)	449
SetI	ASST	6 cut(s)	226, 249, 289, 305, 417, 475
SmiMI	CAYNNNNRTG	1 cut(s)	289
Sse9I	AATT	6 cut(s)	86, 237, 344, 363, 531, 605
SsiI	CCGC	1 cut(s)	267
SspMI	CTAG	2 cut(s)	135, 470
StyI	CCWWGG	1 cut(s)	191
TaaI	ACNGT	1 cut(s)	353
TaqI	TCGA	1 cut(s)	554
TasI	AATT	6 cut(s)	86, 237, 344, 363, 531, 605
TatI	WGTACW	1 cut(s)	457
TauI	GCSGC	1 cut(s)	270
TfiI	GAWTC	1 cut(s)	56
Tru1I	TTAA	2 cut(s)	549, 597
Tru9I	TTAA	2 cut(s)	549, 597
TseFI	GTSAC	1 cut(s)	394
TseI	GCWGC	1 cut(s)	257
Tsp45I	GTSAC	1 cut(s)	394
TspDTI	ATGAA	3 cut(s)	246, 279, 404
XapI	RAATTY	1 cut(s)	605
XspI	CTAG	2 cut(s)	135, 470
Zsp2I	ATGCAT	1 cut(s)	616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.