RLG00000010142

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
N/A
Physical Location & Seq
Forward (+)
63408145 .. 63408834
690 bp
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UTR
Exon/CDS
Intron
RLM00000010142

Sequence Viewer

Length: 492 bp
ATGGAGAAGCTTTTAAATGTCGATGATAAAAATATTGTTCGCATGGTCGGGATATGGGGGACTGGTGGGATAGGTAAGAAAACAATTGCTAAGGCGGTCGATAATCTAATTTCCCCTAGGTTCGAAAGTAGATGTTTCTTGGCAAATGTCAGATCAAAAGCAGCGAACCAAGAAGGCTTGGCCCAATTGCAAGAGACTCTTCTGCGAGATCTTCCAAGGGAAAAAAAACTTGAAGTATACGAGGCCAGGATGCTAGATGATGATGCCGCTTTGGAGTTGTTTAGTTTGAATGCATTCAGAAGAAATCGACCTCCAAAGAATTACTTGAAACTTGCAAGACTTGCAGTATGCTATGCCCAAGGCCTTCCATTAGCTTTGATAGTTTTAGGCTCTCATCTAATGGATAGAAGCATAGAGCAGTGGGAAGTTGCATTAGACAGTTCTAAAAGAGTTCCTCATAAGAAAATACAAGACATTCTGAAGATCATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

164

Amino Acids

18.48

Weight (kDa)

9.54

Isoelectric Point (pI)

39.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 237
AciI CCGC 2 cut(s) 95, 267
AgsI TTSAA 3 cut(s) 233, 289, 328
AjnI CCWGG 1 cut(s) 245
AluBI AGCT 2 cut(s) 10, 374
AluI AGCT 2 cut(s) 10, 374
Alw26I GTCTC 1 cut(s) 188
AoxI GGCC 3 cut(s) 180, 243, 361
ApeKI GCWGC 1 cut(s) 161
Asp700I GAANNNNTTC 1 cut(s) 293
AspA2I CCTAGG 1 cut(s) 116
AspS9I GGNCC 1 cut(s) 181
AsuII TTCGAA 1 cut(s) 123
AvrII CCTAGG 1 cut(s) 116
BbvI GCAGC 1 cut(s) 173
BciT130I CCWGG 1 cut(s) 247
BcoDI GTCTC 1 cut(s) 188
BfaI CTAG 2 cut(s) 117, 254
BglII AGATCT 1 cut(s) 208
BisI GCNGC 2 cut(s) 162, 267
BlnI CCTAGG 1 cut(s) 116
BlsI GCNGC 2 cut(s) 163, 268
Bme1390I CCNGG 1 cut(s) 247
BmgT120I GGNCC 1 cut(s) 181
BmrFI CCNGG 1 cut(s) 247
BmsI GCATC 2 cut(s) 240, 253
Bpu10I CCTNAGC 1 cut(s) 90
Bpu14I TTCGAA 1 cut(s) 123
BsaJI CCNNGG 3 cut(s) 116, 215, 358
Bse1I ACTGG 1 cut(s) 67
BseBI CCWGG 1 cut(s) 247
BseDI CCNNGG 3 cut(s) 116, 215, 358
BseGI GGATG 1 cut(s) 255
BseNI ACTGG 1 cut(s) 67
BseXI GCAGC 1 cut(s) 173
Bsh1285I CGRYCG 1 cut(s) 99
BshFI GGCC 3 cut(s) 182, 245, 363
BsiEI CGRYCG 1 cut(s) 99
BslFI GGGAC 1 cut(s) 73
BsmAI GTCTC 1 cut(s) 188
BsmFI GGGAC 1 cut(s) 73
BsmI GAATGC 2 cut(s) 293, 295
BsnI GGCC 3 cut(s) 182, 245, 363
Bsp119I TTCGAA 1 cut(s) 123
Bsp143I GATC 3 cut(s) 152, 208, 483
BspACI CCGC 2 cut(s) 95, 267
BspANI GGCC 3 cut(s) 182, 245, 363
BspT104I TTCGAA 1 cut(s) 123
BsrI ACTGG 1 cut(s) 67
BssECI CCNNGG 3 cut(s) 116, 215, 358
BssMI GATC 3 cut(s) 152, 208, 483
BssNAI GTATAC 1 cut(s) 238
BssT1I CCWWGG 3 cut(s) 116, 215, 358
Bst1107I GTATAC 1 cut(s) 238
Bst2UI CCWGG 1 cut(s) 247
Bst4CI ACNGT 1 cut(s) 440
Bst6I CTCTTC 1 cut(s) 204
BstAPI GCANNNNNTGC 1 cut(s) 341
BstBI TTCGAA 1 cut(s) 123
BstDEI CTNAG 1 cut(s) 90
BstF5I GGATG 1 cut(s) 255
BstKTI GATC 3 cut(s) 155, 211, 486
BstMAI GTCTC 1 cut(s) 188
BstMBI GATC 3 cut(s) 152, 208, 483
BstMCI CGRYCG 1 cut(s) 99
BstMWI GCNNNNNNNGC 1 cut(s) 341
BstNI CCWGG 1 cut(s) 247
BstSCI CCNGG 1 cut(s) 245
BstV1I GCAGC 1 cut(s) 173
BstX2I RGATCY 1 cut(s) 208
BstYI RGATCY 1 cut(s) 208
BstZ17I GTATAC 1 cut(s) 238
BsuRI GGCC 3 cut(s) 182, 245, 363
BtsCI GGATG 1 cut(s) 255
BtsI GCAGTG 1 cut(s) 425
BtsIMutI CAGTG 1 cut(s) 425
Cfr13I GGNCC 1 cut(s) 181
CviAII CATG 1 cut(s) 43
CviJI RGCY 7 cut(s) 10, 177, 182, 245, 363, 374, 390
CviKI_1 RGCY 7 cut(s) 10, 177, 182, 245, 363, 374, 390
DdeI CTNAG 1 cut(s) 90
DpnI GATC 3 cut(s) 154, 210, 485
DpnII GATC 3 cut(s) 152, 208, 483
DraI TTTAAA 1 cut(s) 15
Eam1104I CTCTTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 204
Eco130I CCWWGG 3 cut(s) 116, 215, 358
Eco147I AGGCCT 1 cut(s) 363
EcoRII CCWGG 1 cut(s) 245
EcoT14I CCWWGG 3 cut(s) 116, 215, 358
EcoT22I ATGCAT 1 cut(s) 295
ErhI CCWWGG 3 cut(s) 116, 215, 358
FaeI CATG 1 cut(s) 46
FaiI YATR 7 cut(s) 44, 55, 238, 349, 354, 413, 459
FalI AAGNNNNNCTT 4 cut(s) 183, 215, 308, 340
FaqI GGGAC 1 cut(s) 73
FatI CATG 1 cut(s) 42
FblI GTMKAC 1 cut(s) 237
Fnu4HI GCNGC 2 cut(s) 162, 267
FokI GGATG 1 cut(s) 262
Fsp4HI GCNGC 2 cut(s) 162, 267
FspBI CTAG 2 cut(s) 117, 254
GluI GCNGC 2 cut(s) 162, 267
HaeIII GGCC 3 cut(s) 182, 245, 363
Hin1II CATG 1 cut(s) 46
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 1 cut(s) 196
Hpy166II GTNNAC 1 cut(s) 238
Hpy188I TCNGA 3 cut(s) 152, 299, 480
Hpy188III TCNNGA 1 cut(s) 49
Hpy8I GTNNAC 1 cut(s) 238
HpyAV CCTTC 2 cut(s) 167, 374
HpyCH4III ACNGT 1 cut(s) 440
HpyCH4V TGCA 5 cut(s) 190, 293, 335, 344, 431
HpyF10VI GCNNNNNNNGC 1 cut(s) 341
HpyF3I CTNAG 1 cut(s) 90
Hsp92II CATG 1 cut(s) 46
Kzo9I GATC 3 cut(s) 152, 208, 483
LpnPI CCDG 3 cut(s) 48, 232, 259
Lsp1109I GCAGC 1 cut(s) 173
LweI GCATC 2 cut(s) 240, 253
MaeI CTAG 2 cut(s) 117, 254
MalI GATC 3 cut(s) 154, 210, 485
MboI GATC 3 cut(s) 152, 208, 483
MboII GAAGA 3 cut(s) 191, 203, 312
MfeI CAATTG 2 cut(s) 84, 185
MflI RGATCY 1 cut(s) 208
MluCI AATT 4 cut(s) 84, 108, 185, 319
MlyI GAGTC 1 cut(s) 190
MnlI CCTC 3 cut(s) 235, 321, 465
Mph1103I ATGCAT 1 cut(s) 295
MroXI GAANNNNTTC 1 cut(s) 293
MseI TTAA 1 cut(s) 14
MspR9I CCNGG 1 cut(s) 247
MunI CAATTG 2 cut(s) 84, 185
Mva1269I GAATGC 2 cut(s) 293, 295
MvaI CCWGG 1 cut(s) 247
MwoI GCNNNNNNNGC 1 cut(s) 341
NdeII GATC 3 cut(s) 152, 208, 483
NlaIII CATG 1 cut(s) 46
NsiI ATGCAT 1 cut(s) 295
NspV TTCGAA 1 cut(s) 123
PceI AGGCCT 1 cut(s) 363
PctI GAATGC 2 cut(s) 293, 295
PdmI GAANNNNTTC 1 cut(s) 293
PkrI GCNGC 2 cut(s) 163, 268
PleI GAGTC 1 cut(s) 190
PpsI GAGTC 1 cut(s) 190
Psp6I CCWGG 1 cut(s) 245
PspGI CCWGG 1 cut(s) 245
PspPI GGNCC 1 cut(s) 181
PsuI RGATCY 1 cut(s) 208
SaqAI TTAA 1 cut(s) 14
SatI GCNGC 2 cut(s) 162, 267
Sau3AI GATC 3 cut(s) 152, 208, 483
Sau96I GGNCC 1 cut(s) 181
SchI GAGTC 1 cut(s) 190
ScrFI CCNGG 1 cut(s) 247
SetI ASST 5 cut(s) 12, 76, 122, 313, 376
SfaNI GCATC 2 cut(s) 240, 253
SfuI TTCGAA 1 cut(s) 123
Sse9I AATT 4 cut(s) 84, 108, 185, 319
SseBI AGGCCT 1 cut(s) 363
SsiI CCGC 2 cut(s) 95, 267
SspI AATATT 1 cut(s) 34
SspMI CTAG 2 cut(s) 117, 254
StuI AGGCCT 1 cut(s) 363
StyD4I CCNGG 1 cut(s) 245
StyI CCWWGG 3 cut(s) 116, 215, 358
TaaI ACNGT 1 cut(s) 440
TaqI TCGA 4 cut(s) 21, 99, 123, 307
TasI AATT 4 cut(s) 84, 108, 185, 319
TauI GCSGC 1 cut(s) 269
Tru1I TTAA 1 cut(s) 14
Tru9I TTAA 1 cut(s) 14
TscAI CASTG 1 cut(s) 425
TseI GCWGC 1 cut(s) 161
TspRI CASTG 1 cut(s) 425
XmaJI CCTAGG 1 cut(s) 116
XmiI GTMKAC 1 cut(s) 237
XmnI GAANNNNTTC 1 cut(s) 293
XspI CTAG 2 cut(s) 117, 254
Zsp2I ATGCAT 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.