Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

64124018 .. 64125001

Gene Structure 984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010200

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGGAGGCTTCATATTGTTGTCTGTTCTCCTCTTGTCGGAAACCTGCCTGGCTAGTGTTAGAAATTTTGGGAAAATTAGTCCGGGGTTTCAAGGGGCTCAGATGAATTGGATTGACAATGAGGTTGATTCTCGTCTAATCAATCCGATTTTGCTTTTGGCTTTGTCACCACTCCTCAAGATGTCACTTTGTTCCTGCTTTGGTGGTGTGTCGTTGCAAAAGGGTGGAAGTGTGGTTTGGTCTATAGATACTGGTAAAACAGTTACTGCAACGGAATTGCGGGACTCGGGAAATTTGGTTTTGCTTGGGGATGACAATGGAGTGGTTTCCAAACACCACAGCCTAATTGGTCCATGGAAGGAAAGCCGTAAAACAATCAACACAGATGATGGGGCAGTCACTTCGGCATCTATCAGTGCAAATTCATGGAAGTTCTATGATAGTTCCAAAGTGCGACTATGGCAATTCATTTTCTCATCCAATGTTGATGTCAATGCCACATGGATTGCAGTTTTGGGAAATGATGGATTTATTTCTTTTTCCAATCTTCAGAATGGAGGTTCAAATGGTCCTTCAACGACGAAAATACCAGGGGACTCATGCAGCACCCCCATGCATATTTTGAATGTTTCAGCAACAAGAAGTGCCAGTGCCCTTCAGGTCTTAGCTCCCATGCGAATTGCAAGTCGGGGATTGTCACCTCATGTTAAAAGGGTTCTACAATGCTCACAACTGCTGGAGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0031625 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044464 GO:0046777 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr

Protein Analysis

249

Amino Acids

26.51

Weight (kDa)

8.64

Isoelectric Point (pI)

42.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	53
AciI	CCGC	1 cut(s)	280
AcsI	RAATTY	3 cut(s)	64, 292, 421
AcuI	CTGAAG	2 cut(s)	533, 641
AfiI	CCNNNNNNNGG	1 cut(s)	37
AgsI	TTSAA	4 cut(s)	92, 564, 576, 625
AjnI	CCWGG	2 cut(s)	48, 589
AjuI	GAANNNNNNNTTGG	2 cut(s)	220, 252
AluBI	AGCT	1 cut(s)	668
AluI	AGCT	1 cut(s)	668
AlwNI	CAGNNNCTG	1 cut(s)	266
Ama87I	CYCGRG	1 cut(s)	286
ApeKI	GCWGC	1 cut(s)	603
ApoI	RAATTY	3 cut(s)	64, 292, 421
ArsI	GACNNNNNNTTYG	2 cut(s)	670, 702
AspS9I	GGNCC	2 cut(s)	350, 569
AsuC2I	CCSGG	1 cut(s)	84
AsuHPI	GGTGA	2 cut(s)	159, 690
AvaI	CYCGRG	1 cut(s)	286
AvaII	GGWCC	2 cut(s)	350, 569
BaeGI	GKGCMC	1 cut(s)	655
BanII	GRGCYC	1 cut(s)	100
BbvI	GCAGC	1 cut(s)	615
BccI	CCATC	2 cut(s)	383, 518
BceAI	ACGGC	1 cut(s)	351
BcgI	CGANNNNNNTGC	2 cut(s)	384, 418
BciT130I	CCWGG	2 cut(s)	50, 591
BcnI	CCSGG	1 cut(s)	84
BfaI	CTAG	1 cut(s)	54
BfmI	CTRYAG	1 cut(s)	243
BfuAI	ACCTGC	1 cut(s)	53
BisI	GCNGC	1 cut(s)	604
BlsI	GCNGC	1 cut(s)	605
Bme1390I	CCNGG	3 cut(s)	50, 84, 591
Bme18I	GGWCC	2 cut(s)	350, 569
BmeT110I	CYCGRG	1 cut(s)	286
BmgT120I	GGNCC	2 cut(s)	350, 569
BmrFI	CCNGG	3 cut(s)	50, 84, 591
BmsI	GCATC	1 cut(s)	416
BpuEI	CTTGAG	1 cut(s)	161
BpuMI	CCSGG	1 cut(s)	84
BsaJI	CCNNGG	3 cut(s)	83, 353, 590
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
Bse1I	ACTGG	2 cut(s)	256, 648
BseBI	CCWGG	2 cut(s)	50, 591
BseDI	CCNNGG	3 cut(s)	83, 353, 590
BseGI	GGATG	2 cut(s)	316, 476
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseMII	CTCAG	1 cut(s)	113
BseNI	ACTGG	2 cut(s)	256, 648
BseRI	GAGGAG	2 cut(s)	20, 164
BseSI	GKGCMC	1 cut(s)	655
BseXI	GCAGC	1 cut(s)	615
BsiHKCI	CYCGRG	1 cut(s)	286
BsiSI	CCGG	1 cut(s)	83
BslFI	GGGAC	2 cut(s)	296, 608
BslI	CCNNNNNNNGG	1 cut(s)	37
BsmFI	GGGAC	2 cut(s)	296, 608
BsoBI	CYCGRG	1 cut(s)	286
Bsp1286I	GDGCHC	2 cut(s)	100, 655
Bsp19I	CCATGG	1 cut(s)	353
BspACI	CCGC	1 cut(s)	280
BspCNI	CTCAG	1 cut(s)	112
BspMI	ACCTGC	1 cut(s)	53
BsrI	ACTGG	2 cut(s)	256, 648
BssECI	CCNNGG	3 cut(s)	83, 353, 590
BssT1I	CCWWGG	1 cut(s)	353
Bst2UI	CCWGG	2 cut(s)	50, 591
Bst4CI	ACNGT	1 cut(s)	262
BstDEI	CTNAG	2 cut(s)	99, 664
BstDSI	CCRYGG	1 cut(s)	353
BstF5I	GGATG	2 cut(s)	316, 476
BstMWI	GCNNNNNNNGC	1 cut(s)	460
BstNI	CCWGG	2 cut(s)	50, 591
BstSCI	CCNGG	3 cut(s)	48, 82, 589
BstSFI	CTRYAG	1 cut(s)	243
BstSLI	GKGCMC	1 cut(s)	655
BstV1I	GCAGC	1 cut(s)	615
BtgI	CCRYGG	1 cut(s)	353
BtsCI	GGATG	2 cut(s)	316, 476
BtsIMutI	CAGTG	2 cut(s)	421, 655
BveI	ACCTGC	1 cut(s)	53
CaiI	CAGNNNCTG	1 cut(s)	266
Cfr13I	GGNCC	2 cut(s)	350, 569
CspCI	CAANNNNNGTGG	2 cut(s)	487, 522
CviAII	CATG	7 cut(s)	354, 426, 501, 600, 613, 673, 704
CviJI	RGCY	7 cut(s)	9, 53, 98, 161, 342, 366, 668
CviKI_1	RGCY	7 cut(s)	9, 53, 98, 161, 342, 366, 668
DdeI	CTNAG	2 cut(s)	99, 664
Eco130I	CCWWGG	1 cut(s)	353
Eco24I	GRGCYC	1 cut(s)	100
Eco47I	GGWCC	2 cut(s)	350, 569
Eco57I	CTGAAG	2 cut(s)	533, 641
Eco88I	CYCGRG	1 cut(s)	286
EcoRII	CCWGG	2 cut(s)	48, 589
EcoT14I	CCWWGG	1 cut(s)	353
EcoT22I	ATGCAT	1 cut(s)	618
EcoT38I	GRGCYC	1 cut(s)	100
ErhI	CCWWGG	1 cut(s)	353
FaeI	CATG	7 cut(s)	357, 429, 504, 603, 616, 676, 707
FaqI	GGGAC	2 cut(s)	296, 608
FatI	CATG	7 cut(s)	353, 425, 500, 599, 612, 672, 703
FauI	CCCGC	1 cut(s)	273
Fnu4HI	GCNGC	1 cut(s)	604
FokI	GGATG	2 cut(s)	323, 463
FriOI	GRGCYC	1 cut(s)	100
Fsp4HI	GCNGC	1 cut(s)	604
FspBI	CTAG	1 cut(s)	54
GluI	GCNGC	1 cut(s)	604
HapII	CCGG	1 cut(s)	83
Hin1II	CATG	7 cut(s)	357, 429, 504, 603, 616, 676, 707
HinfI	GANTC	3 cut(s)	128, 284, 596
HpaII	CCGG	1 cut(s)	83
HphI	GGTGA	2 cut(s)	159, 690
Hpy188I	TCNGA	4 cut(s)	40, 102, 147, 552
Hpy188III	TCNNGA	2 cut(s)	178, 288
Hpy99I	CGWCG	1 cut(s)	583
HpyAV	CCTTC	3 cut(s)	352, 582, 665
HpyCH4III	ACNGT	1 cut(s)	262
HpyCH4V	TGCA	7 cut(s)	217, 269, 419, 509, 603, 616, 683
HpyF10VI	GCNNNNNNNGC	1 cut(s)	460
HpyF3I	CTNAG	2 cut(s)	99, 664
Hsp92II	CATG	7 cut(s)	357, 429, 504, 603, 616, 676, 707
LmnI	GCTCC	2 cut(s)	673, 739
Lsp1109I	GCAGC	1 cut(s)	615
LweI	GCATC	1 cut(s)	416
MaeI	CTAG	1 cut(s)	54
MaeIII	GTNAC	5 cut(s)	165, 183, 262, 397, 696
MboII	GAAGA	1 cut(s)	539
MhlI	GDGCHC	2 cut(s)	100, 655
MluCI	AATT	9 cut(s)	64, 75, 106, 275, 292, 345, 421, 464, 678
MlyI	GAGTC	2 cut(s)	278, 590
MmeI	TCCRAC	1 cut(s)	18
MnlI	CCTC	5 cut(s)	41, 115, 185, 551, 711
Mph1103I	ATGCAT	1 cut(s)	618
MseI	TTAA	1 cut(s)	708
MslI	CAYNNNNRTG	1 cut(s)	611
MspI	CCGG	1 cut(s)	83
MspR9I	CCNGG	3 cut(s)	50, 84, 591
MvaI	CCWGG	2 cut(s)	50, 591
MwoI	GCNNNNNNNGC	1 cut(s)	460
NciI	CCSGG	1 cut(s)	84
NcoI	CCATGG	1 cut(s)	353
NlaIII	CATG	7 cut(s)	357, 429, 504, 603, 616, 676, 707
NmuCI	GTSAC	4 cut(s)	165, 183, 397, 696
NsiI	ATGCAT	1 cut(s)	618
PfeI	GAWTC	1 cut(s)	128
PkrI	GCNGC	1 cut(s)	605
PleI	GAGTC	2 cut(s)	278, 590
PpsI	GAGTC	2 cut(s)	278, 590
Psp6I	CCWGG	2 cut(s)	48, 589
PspGI	CCWGG	2 cut(s)	48, 589
PspPI	GGNCC	2 cut(s)	350, 569
PstNI	CAGNNNCTG	1 cut(s)	266
RseI	CAYNNNNRTG	1 cut(s)	611
SaqAI	TTAA	1 cut(s)	708
SatI	GCNGC	1 cut(s)	604
Sau96I	GGNCC	2 cut(s)	350, 569
SchI	GAGTC	2 cut(s)	278, 590
ScrFI	CCNGG	3 cut(s)	50, 84, 591
SduI	GDGCHC	2 cut(s)	100, 655
SetI	ASST	6 cut(s)	47, 126, 562, 663, 670, 703
SfaNI	GCATC	1 cut(s)	416
SfcI	CTRYAG	1 cut(s)	243
SinI	GGWCC	2 cut(s)	350, 569
SmiMI	CAYNNNNRTG	1 cut(s)	611
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	9 cut(s)	64, 75, 106, 275, 292, 345, 421, 464, 678
SsiI	CCGC	1 cut(s)	280
SspMI	CTAG	1 cut(s)	54
StyD4I	CCNGG	3 cut(s)	48, 82, 589
StyI	CCWWGG	1 cut(s)	353
TaaI	ACNGT	1 cut(s)	262
TasI	AATT	9 cut(s)	64, 75, 106, 275, 292, 345, 421, 464, 678
TfiI	GAWTC	1 cut(s)	128
Tru1I	TTAA	1 cut(s)	708
Tru9I	TTAA	1 cut(s)	708
TscAI	CASTG	2 cut(s)	421, 655
TseFI	GTSAC	4 cut(s)	165, 183, 397, 696
TseI	GCWGC	1 cut(s)	603
Tsp45I	GTSAC	4 cut(s)	165, 183, 397, 696
TspDTI	ATGAA	3 cut(s)	119, 414, 457
TspGWI	ACGGA	1 cut(s)	287
TspRI	CASTG	2 cut(s)	421, 655
VpaK11BI	GGWCC	2 cut(s)	350, 569
XapI	RAATTY	3 cut(s)	64, 292, 421
XcmI	CCANNNNNNNNNTGG	1 cut(s)	344
XspI	CTAG	1 cut(s)	54
Zsp2I	ATGCAT	1 cut(s)	618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.