RLG00000010629

receptor protein kinase ZmPK1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
N/A
Physical Location & Seq
Reverse (-)
3110338 .. 3111331
994 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010629

Sequence Viewer

Length: 741 bp
ATGGCGGGCTATTCTACAACGCGTAATACTGTCATCTCCATTGTCATCTCTTCATCATCTACATCTAGTAATCTGAGAATAGGTTCATCTCTCTCGGTGGAACATCTGTTCGATTCTTTGCGGTCACCAAATGGTGCATTCTCTGCCGGATTTTTCCCCGTAGGCGAAAATGCATATTGCTTTGCCATCAGGTTTACCGAGCCAACAACACCAACTCGCAACCTCACCGTGGTATGGATGGCCAACCGTGACCAGCCGGTCAACGGTCACCGCTCCAAGCTCTCCCTCCAGAGAAACGGCAACCTTATTCTCACCGATGCTGGCAAATCCACCGTTTGGTCCTCCAACACCGTCTCAAATTCATTAGTCCAATTGCTCCTCCACAACACTGGCAATCTTGTCCTGCTAGCCGGTGACGGTGTCAAGCCTCACCAACTCCTCCTCCGGCTTCTCTACCATGGCCCCGAAGTTTCGAGTATTTACTGGCCTGACTCTTGGATTCTAAGTTACCAAGCTGAGAGGTCCTCGTACAACAACAGTAGAATCGCAATGTTCGATGCATTAGGGCACCTCAGTGCATCCGACGACTTTAGAGTTTTGTCCTCGGATTACGGTGCCAAGGTGCAGAGAATTGTGAAGGTGGATGTGGATGGTAACGTCCGAATGTATAGTCGAAAGAAGCCTGGAGAGACCTGGGGTTTCGCAACCATGCAAAATTCATGGGCTCTGTGGAGCCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

247

Amino Acids

27.21

Weight (kDa)

9.44

Isoelectric Point (pI)

32.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 76 - 135 7.2e-15 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 257
AccB1I GGYRCC 2 cut(s) 567, 614
AccB7I CCANNNNNTGG 1 cut(s) 336
AccBSI CCGCTC 1 cut(s) 273
AccII CGCG 1 cut(s) 22
AciI CCGC 3 cut(s) 5, 121, 271
AcoI YGGCCR 1 cut(s) 240
AcsI RAATTY 2 cut(s) 358, 715
AfaI GTAC 1 cut(s) 530
AfiI CCNNNNNNNGG 4 cut(s) 229, 234, 263, 336
AflIII ACRYGT 1 cut(s) 20
AjnI CCWGG 2 cut(s) 682, 692
AleI CACNNNNGTG 1 cut(s) 573
AloI GAACNNNNNNTCC 2 cut(s) 92, 124
AluBI AGCT 2 cut(s) 280, 515
AluI AGCT 2 cut(s) 280, 515
Alw26I GTCTC 2 cut(s) 358, 683
AoxI GGCC 3 cut(s) 240, 460, 485
ApoI RAATTY 2 cut(s) 358, 715
ArsI GACNNNNNNTTYG 2 cut(s) 655, 687
Asp700I GAANNNNTTC 1 cut(s) 82
AspS9I GGNCC 3 cut(s) 339, 461, 522
AsuHPI GGTGA 6 cut(s) 117, 217, 260, 304, 422, 425
AsuNHI GCTAGC 1 cut(s) 406
AvaII GGWCC 2 cut(s) 339, 522
BaeGI GKGCMC 1 cut(s) 570
BalI TGGCCA 1 cut(s) 242
BanI GGYRCC 2 cut(s) 567, 614
BanII GRGCYC 1 cut(s) 727
BccI CCATC 3 cut(s) 194, 232, 644
BceAI ACGGC 1 cut(s) 313
BciT130I CCWGG 2 cut(s) 684, 694
BcoDI GTCTC 2 cut(s) 358, 683
BfaI CTAG 2 cut(s) 66, 407
Bme1390I CCNGG 2 cut(s) 684, 694
Bme18I GGWCC 2 cut(s) 339, 522
BmgT120I GGNCC 3 cut(s) 339, 461, 522
BmiI GGNNCC 4 cut(s) 463, 569, 616, 734
BmrFI CCNGG 2 cut(s) 684, 694
BmsI GCATC 3 cut(s) 307, 547, 587
BmtI GCTAGC 1 cut(s) 410
BplI GAGNNNNNCTC 2 cut(s) 509, 541
BpmI CTGGAG 2 cut(s) 272, 705
BsaI GGTCTC 1 cut(s) 683
BsaJI CCNNGG 5 cut(s) 228, 457, 603, 618, 693
BsaXI ACNNNNNCTCC 2 cut(s) 426, 456
Bsc4I CCNNNNNNNGG 4 cut(s) 229, 234, 263, 336
Bse118I RCCGGY 2 cut(s) 256, 410
Bse1I ACTGG 2 cut(s) 394, 488
Bse3DI GCAATG 1 cut(s) 555
BseBI CCWGG 2 cut(s) 684, 694
BseDI CCNNGG 5 cut(s) 228, 457, 603, 618, 693
BseGI GGATG 4 cut(s) 243, 578, 649, 655
BseLI CCNNNNNNNGG 4 cut(s) 229, 234, 263, 336
BseMI GCAATG 1 cut(s) 555
BseMII CTCAG 3 cut(s) 65, 507, 586
BseNI ACTGG 2 cut(s) 394, 488
BseRI GAGGAG 3 cut(s) 368, 428, 431
BseSI GKGCMC 1 cut(s) 570
BsgI GTGCAG 1 cut(s) 644
Bsh1236I CGCG 1 cut(s) 22
BshFI GGCC 3 cut(s) 242, 462, 487
BshNI GGYRCC 2 cut(s) 567, 614
BsiSI CCGG 4 cut(s) 147, 257, 411, 445
BslI CCNNNNNNNGG 4 cut(s) 229, 234, 263, 336
BsmAI GTCTC 2 cut(s) 358, 683
BsmBI CGTCTC 1 cut(s) 358
BsmI GAATGC 1 cut(s) 137
BsnI GGCC 3 cut(s) 242, 462, 487
Bso31I GGTCTC 1 cut(s) 683
Bsp1286I GDGCHC 2 cut(s) 570, 727
Bsp19I CCATGG 1 cut(s) 457
BspACI CCGC 3 cut(s) 5, 121, 271
BspANI GGCC 3 cut(s) 242, 462, 487
BspCNI CTCAG 3 cut(s) 66, 508, 585
BspFNI CGCG 1 cut(s) 22
BspLI GGNNCC 4 cut(s) 463, 569, 616, 734
BspOI GCTAGC 1 cut(s) 410
BspT107I GGYRCC 2 cut(s) 567, 614
BspTNI GGTCTC 1 cut(s) 683
BsrBI CCGCTC 1 cut(s) 273
BsrDI GCAATG 1 cut(s) 555
BsrFI RCCGGY 2 cut(s) 256, 410
BsrI ACTGG 2 cut(s) 394, 488
BssAI RCCGGY 2 cut(s) 256, 410
BssECI CCNNGG 5 cut(s) 228, 457, 603, 618, 693
BssT1I CCWWGG 2 cut(s) 457, 618
Bst2UI CCWGG 2 cut(s) 684, 694
Bst4CI ACNGT 9 cut(s) 31, 229, 248, 266, 334, 352, 419, 539, 614
Bst6I CTCTTC 1 cut(s) 55
BstAPI GCANNNNNTGC 1 cut(s) 143
BstC8I GCNNGC 3 cut(s) 7, 322, 408
BstDEI CTNAG 4 cut(s) 74, 503, 516, 572
BstDSI CCRYGG 2 cut(s) 228, 457
BstEII GGTNACC 2 cut(s) 123, 266
BstF5I GGATG 4 cut(s) 243, 578, 649, 655
BstFNI CGCG 1 cut(s) 22
BstMAI GTCTC 2 cut(s) 358, 683
BstMWI GCNNNNNNNGC 1 cut(s) 143
BstNI CCWGG 2 cut(s) 684, 694
BstPI GGTNACC 2 cut(s) 123, 266
BstSCI CCNGG 2 cut(s) 682, 692
BstSLI GKGCMC 1 cut(s) 570
BstUI CGCG 1 cut(s) 22
BstXI CCANNNNNNTGG 1 cut(s) 389
BsuRI GGCC 3 cut(s) 242, 462, 487
BtgI CCRYGG 2 cut(s) 228, 457
BtsCI GGATG 4 cut(s) 243, 578, 649, 655
BtsIMutI CAGTG 2 cut(s) 387, 580
Cac8I GCNNGC 3 cut(s) 7, 322, 408
Cfr10I RCCGGY 2 cut(s) 256, 410
Cfr13I GGNCC 3 cut(s) 339, 461, 522
Csp6I GTAC 1 cut(s) 529
CviAII CATG 3 cut(s) 458, 709, 720
CviQI GTAC 1 cut(s) 529
DdeI CTNAG 4 cut(s) 74, 503, 516, 572
DrdI GACNNNNNNGTC 1 cut(s) 257
DseDI GACNNNNNNGTC 1 cut(s) 257
EaeI YGGCCR 1 cut(s) 240
Eam1104I CTCTTC 1 cut(s) 55
EarI CTCTTC 1 cut(s) 55
Eco130I CCWWGG 2 cut(s) 457, 618
Eco24I GRGCYC 1 cut(s) 727
Eco31I GGTCTC 1 cut(s) 683
Eco47I GGWCC 2 cut(s) 339, 522
Eco91I GGTNACC 2 cut(s) 123, 266
EcoO109I RGGNCCY 1 cut(s) 522
EcoO65I GGTNACC 2 cut(s) 123, 266
EcoRII CCWGG 2 cut(s) 682, 692
EcoT14I CCWWGG 2 cut(s) 457, 618
EcoT22I ATGCAT 2 cut(s) 175, 562
EcoT38I GRGCYC 1 cut(s) 727
ErhI CCWWGG 2 cut(s) 457, 618
Esp3I CGTCTC 1 cut(s) 358
FaeI CATG 3 cut(s) 461, 712, 723
FaiI YATR 6 cut(s) 175, 235, 459, 669, 710, 721
FatI CATG 3 cut(s) 457, 708, 719
FokI GGATG 4 cut(s) 250, 565, 656, 662
FriOI GRGCYC 1 cut(s) 727
FspBI CTAG 2 cut(s) 66, 407
GsuI CTGGAG 2 cut(s) 272, 705
HaeIII GGCC 3 cut(s) 242, 462, 487
HapII CCGG 4 cut(s) 147, 257, 411, 445
Hin1II CATG 3 cut(s) 461, 712, 723
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HinfI GANTC 4 cut(s) 113, 491, 499, 543
HpaII CCGG 4 cut(s) 147, 257, 411, 445
HphI GGTGA 6 cut(s) 117, 217, 260, 304, 422, 425
Hpy166II GTNNAC 2 cut(s) 195, 262
Hpy188I TCNGA 4 cut(s) 75, 583, 607, 662
Hpy188III TCNNGA 1 cut(s) 289
Hpy8I GTNNAC 2 cut(s) 195, 262
Hpy99I CGWCG 1 cut(s) 587
HpyAV CCTTC 1 cut(s) 631
HpyCH4III ACNGT 9 cut(s) 31, 229, 248, 266, 334, 352, 419, 539, 614
HpyCH4IV ACGT 1 cut(s) 657
HpyCH4V TGCA 6 cut(s) 137, 173, 560, 578, 625, 712
HpyF10VI GCNNNNNNNGC 1 cut(s) 143
HpyF3I CTNAG 4 cut(s) 74, 503, 516, 572
HpySE526I ACGT 1 cut(s) 657
Hsp92II CATG 3 cut(s) 461, 712, 723
LmnI GCTCC 3 cut(s) 278, 381, 732
LweI GCATC 3 cut(s) 307, 547, 587
MaeI CTAG 2 cut(s) 66, 407
MaeII ACGT 1 cut(s) 657
MaeIII GTNAC 6 cut(s) 123, 248, 266, 413, 506, 653
MbiI CCGCTC 1 cut(s) 273
MboII GAAGA 1 cut(s) 42
MfeI CAATTG 1 cut(s) 371
MhlI GDGCHC 2 cut(s) 570, 727
MlsI TGGCCA 1 cut(s) 242
MluCI AATT 4 cut(s) 358, 371, 630, 715
MluI ACGCGT 1 cut(s) 20
MluNI TGGCCA 1 cut(s) 242
MlyI GAGTC 1 cut(s) 485
MmeI TCCRAC 2 cut(s) 369, 606
Mox20I TGGCCA 1 cut(s) 242
Mph1103I ATGCAT 2 cut(s) 175, 562
MroXI GAANNNNTTC 1 cut(s) 82
MscI TGGCCA 1 cut(s) 242
MslI CAYNNNNRTG 1 cut(s) 573
Msp20I TGGCCA 1 cut(s) 242
MspI CCGG 4 cut(s) 147, 257, 411, 445
MspR9I CCNGG 2 cut(s) 684, 694
MunI CAATTG 1 cut(s) 371
Mva1269I GAATGC 1 cut(s) 137
MvaI CCWGG 2 cut(s) 684, 694
MvnI CGCG 1 cut(s) 22
MwoI GCNNNNNNNGC 1 cut(s) 143
NcoI CCATGG 1 cut(s) 457
NheI GCTAGC 1 cut(s) 406
NlaIII CATG 3 cut(s) 461, 712, 723
NlaIV GGNNCC 4 cut(s) 463, 569, 616, 734
NmuCI GTSAC 4 cut(s) 123, 248, 266, 413
NsiI ATGCAT 2 cut(s) 175, 562
OliI CACNNNNGTG 1 cut(s) 573
PcsI WCGNNNNNNNCGW 1 cut(s) 552
PctI GAATGC 1 cut(s) 137
PdmI GAANNNNTTC 1 cut(s) 82
PfeI GAWTC 3 cut(s) 113, 499, 543
PflFI GACNNNGTC 1 cut(s) 419
PflMI CCANNNNNTGG 1 cut(s) 336
PleI GAGTC 1 cut(s) 485
PpsI GAGTC 1 cut(s) 485
PpuMI RGGWCCY 1 cut(s) 522
Psp5II RGGWCCY 1 cut(s) 522
Psp6I CCWGG 2 cut(s) 682, 692
PspEI GGTNACC 2 cut(s) 123, 266
PspGI CCWGG 2 cut(s) 682, 692
PspN4I GGNNCC 4 cut(s) 463, 569, 616, 734
PspPI GGNCC 3 cut(s) 339, 461, 522
PspPPI RGGWCCY 1 cut(s) 522
PsyI GACNNNGTC 1 cut(s) 419
RsaI GTAC 1 cut(s) 530
RsaNI GTAC 1 cut(s) 529
RseI CAYNNNNRTG 1 cut(s) 573
Sau96I GGNCC 3 cut(s) 339, 461, 522
SchI GAGTC 1 cut(s) 485
ScrFI CCNGG 2 cut(s) 684, 694
SduI GDGCHC 2 cut(s) 570, 727
SfaNI GCATC 3 cut(s) 307, 547, 587
SinI GGWCC 2 cut(s) 339, 522
SmiMI CAYNNNNRTG 1 cut(s) 573
Sse9I AATT 4 cut(s) 358, 371, 630, 715
SsiI CCGC 3 cut(s) 5, 121, 271
SspMI CTAG 2 cut(s) 66, 407
StyD4I CCNGG 2 cut(s) 682, 692
StyI CCWWGG 2 cut(s) 457, 618
TaaI ACNGT 9 cut(s) 31, 229, 248, 266, 334, 352, 419, 539, 614
TaiI ACGT 1 cut(s) 660
TaqI TCGA 4 cut(s) 111, 473, 555, 673
TasI AATT 4 cut(s) 358, 371, 630, 715
TfiI GAWTC 3 cut(s) 113, 499, 543
TscAI CASTG 2 cut(s) 394, 580
TseFI GTSAC 4 cut(s) 123, 248, 266, 413
Tsp45I GTSAC 4 cut(s) 123, 248, 266, 413
TspDTI ATGAA 4 cut(s) 42, 75, 351, 708
TspRI CASTG 2 cut(s) 394, 580
Tth111I GACNNNGTC 1 cut(s) 419
Van91I CCANNNNNTGG 1 cut(s) 336
VpaK11BI GGWCC 2 cut(s) 339, 522
XapI RAATTY 2 cut(s) 358, 715
XmnI GAANNNNTTC 1 cut(s) 82
XspI CTAG 2 cut(s) 66, 407
Zsp2I ATGCAT 2 cut(s) 175, 562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.