RLG00000010744

F-box LRR-repeat protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
N/A
Physical Location & Seq
Forward (+)
4059260 .. 4060297
1038 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010744

Sequence Viewer

Length: 573 bp
ATGAGCTGCTTGGAGTACCTGAATTTGGCTTGGTTGTCAAAAGTCACTGACATTGGAGGTGTCGCAGTCTCGGAAATTGGAACACTCAAGAAATTGAACTTGAGTTCGCTGTATAAAATCTCAGACTGCACCATTGCTGCTCTTGCTGATAACTGCCGCAACTTGGAGGTGCTTAATATAAGTCGTGGTTCTCTTTTTTTAACTGGAGCTGGTATTCGTGCATTTTCAACTCATCCGTGCTTAGAATCTCTTGTGTATGATGTGGAACGCGTAGTACTTGGGTGCCTGCCCTTCATTGAAGTCTGTTGTGTTGAAATCAGGCAGAATTACGTGTATGCTGCCTCTAATGCAAGTGAACACCCGGAAATTCCTGAGGTTCGAAGATTAATGGGTATGGTTGGATGCAGCAACCCAGTTGCTGTATTTCTTGGGCCTTACTGTTTGTATAGAAAGGCCCCTACTCAAGCCAAAAACCAATCTTTCCTGCATAATCAGGGTGAGCATTACTCAACTCGGCTCCAAACTAACAACAACAACAACAATGATGGTGATCTGGAATGGGGTTTGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

191

Amino Acids

20.99

Weight (kDa)

5.58

Isoelectric Point (pI)

41.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 282
AccII CGCG 1 cut(s) 270
AciI CCGC 1 cut(s) 157
AcsI RAATTY 2 cut(s) 22, 366
AfaI GTAC 2 cut(s) 17, 276
AfiI CCNNNNNNNGG 2 cut(s) 25, 163
AflIII ACRYGT 2 cut(s) 268, 330
AgsI TTSAA 4 cut(s) 97, 228, 299, 314
AluBI AGCT 2 cut(s) 6, 209
AluI AGCT 2 cut(s) 6, 209
Alw26I GTCTC 1 cut(s) 73
AlwNI CAGNNNCTG 1 cut(s) 419
AoxI GGCC 2 cut(s) 431, 453
ApeKI GCWGC 4 cut(s) 6, 137, 338, 405
ApoI RAATTY 2 cut(s) 22, 366
AseI ATTAAT 1 cut(s) 386
AspS9I GGNCC 2 cut(s) 431, 454
AsuC2I CCSGG 1 cut(s) 362
AsuHPI GGTGA 2 cut(s) 509, 560
AsuII TTCGAA 1 cut(s) 379
AxyI CCTNAGG 1 cut(s) 372
BanI GGYRCC 1 cut(s) 282
BbvI GCAGC 3 cut(s) 124, 325, 417
BccI CCATC 1 cut(s) 539
BcnI CCSGG 1 cut(s) 362
BcoDI GTCTC 1 cut(s) 73
BisI GCNGC 5 cut(s) 7, 138, 157, 339, 406
BlsI GCNGC 5 cut(s) 8, 139, 158, 340, 407
BmcAI AGTACT 1 cut(s) 276
Bme1390I CCNGG 1 cut(s) 362
BmgT120I GGNCC 2 cut(s) 431, 454
BmiI GGNNCC 3 cut(s) 284, 456, 518
BmrFI CCNGG 1 cut(s) 362
BmrI ACTGGG 1 cut(s) 407
BmsI GCATC 1 cut(s) 392
BmuI ACTGGG 1 cut(s) 407
BplI GAGNNNNNCTC 2 cut(s) 491, 523
BpmI CTGGAG 1 cut(s) 225
Bpu14I TTCGAA 1 cut(s) 379
BpuEI CTTGAG 3 cut(s) 71, 121, 447
BpuMI CCSGG 1 cut(s) 362
BsaAI YACGTR 1 cut(s) 331
BsaBI GATNNNNATC 1 cut(s) 549
Bsc4I CCNNNNNNNGG 2 cut(s) 25, 163
Bse1I ACTGG 2 cut(s) 208, 413
Bse21I CCTNAGG 1 cut(s) 372
Bse3DI GCAATG 1 cut(s) 132
Bse8I GATNNNNATC 1 cut(s) 549
BseGI GGATG 2 cut(s) 232, 407
BseJI GATNNNNATC 1 cut(s) 549
BseLI CCNNNNNNNGG 2 cut(s) 25, 163
BseMI GCAATG 1 cut(s) 132
BseMII CTCAG 2 cut(s) 135, 363
BseNI ACTGG 2 cut(s) 208, 413
BseXI GCAGC 3 cut(s) 124, 325, 417
BsgI GTGCAG 1 cut(s) 112
Bsh1236I CGCG 1 cut(s) 270
BshFI GGCC 2 cut(s) 433, 455
BshNI GGYRCC 1 cut(s) 282
BsiSI CCGG 1 cut(s) 362
BslI CCNNNNNNNGG 2 cut(s) 25, 163
BsmAI GTCTC 1 cut(s) 73
BsnI GGCC 2 cut(s) 433, 455
Bsp119I TTCGAA 1 cut(s) 379
Bsp143I GATC 1 cut(s) 550
BspACI CCGC 1 cut(s) 157
BspANI GGCC 2 cut(s) 433, 455
BspCNI CTCAG 2 cut(s) 134, 364
BspFNI CGCG 1 cut(s) 270
BspLI GGNNCC 3 cut(s) 284, 456, 518
BspT104I TTCGAA 1 cut(s) 379
BspT107I GGYRCC 1 cut(s) 282
BsrDI GCAATG 1 cut(s) 132
BsrI ACTGG 2 cut(s) 208, 413
BssMI GATC 1 cut(s) 550
Bst4CI ACNGT 1 cut(s) 440
BstBAI YACGTR 1 cut(s) 331
BstBI TTCGAA 1 cut(s) 379
BstC8I GCNNGC 1 cut(s) 287
BstDEI CTNAG 3 cut(s) 121, 241, 372
BstF5I GGATG 2 cut(s) 232, 407
BstFNI CGCG 1 cut(s) 270
BstKTI GATC 1 cut(s) 553
BstMAI GTCTC 1 cut(s) 73
BstMBI GATC 1 cut(s) 550
BstMWI GCNNNNNNNGC 2 cut(s) 143, 347
BstSCI CCNGG 1 cut(s) 360
BstUI CGCG 1 cut(s) 270
BstV1I GCAGC 3 cut(s) 124, 325, 417
Bsu36I CCTNAGG 1 cut(s) 372
BsuRI GGCC 2 cut(s) 433, 455
BtsCI GGATG 2 cut(s) 232, 407
BtsIMutI CAGTG 1 cut(s) 45
Cac8I GCNNGC 1 cut(s) 287
CaiI CAGNNNCTG 1 cut(s) 419
Cfr13I GGNCC 2 cut(s) 431, 454
Csp6I GTAC 2 cut(s) 16, 275
CviJI RGCY 7 cut(s) 6, 29, 209, 433, 455, 467, 517
CviKI_1 RGCY 7 cut(s) 6, 29, 209, 433, 455, 467, 517
CviQI GTAC 2 cut(s) 16, 275
DdeI CTNAG 3 cut(s) 121, 241, 372
DpnI GATC 1 cut(s) 552
DpnII GATC 1 cut(s) 550
Eco81I CCTNAGG 1 cut(s) 372
EcoO109I RGGNCCY 1 cut(s) 454
FaiI YATR 7 cut(s) 114, 179, 258, 336, 395, 447, 489
Fnu4HI GCNGC 5 cut(s) 7, 138, 157, 339, 406
FokI GGATG 2 cut(s) 219, 414
Fsp4HI GCNGC 5 cut(s) 7, 138, 157, 339, 406
GluI GCNGC 5 cut(s) 7, 138, 157, 339, 406
GsuI CTGGAG 1 cut(s) 225
HaeIII GGCC 2 cut(s) 433, 455
HapII CCGG 1 cut(s) 362
HinfI GANTC 1 cut(s) 245
HpaII CCGG 1 cut(s) 362
HphI GGTGA 2 cut(s) 509, 560
Hpy166II GTNNAC 1 cut(s) 356
Hpy188I TCNGA 2 cut(s) 73, 124
Hpy188III TCNNGA 3 cut(s) 88, 371, 554
Hpy8I GTNNAC 1 cut(s) 356
HpyAV CCTTC 1 cut(s) 301
HpyCH4III ACNGT 1 cut(s) 440
HpyCH4IV ACGT 1 cut(s) 330
HpyCH4V TGCA 5 cut(s) 129, 221, 350, 405, 487
HpyF10VI GCNNNNNNNGC 2 cut(s) 143, 347
HpyF3I CTNAG 3 cut(s) 121, 241, 372
HpySE526I ACGT 1 cut(s) 330
Kzo9I GATC 1 cut(s) 550
LmnI GCTCC 2 cut(s) 206, 522
Lsp1109I GCAGC 3 cut(s) 124, 325, 417
LweI GCATC 1 cut(s) 392
MaeII ACGT 1 cut(s) 330
MaeIII GTNAC 1 cut(s) 43
MalI GATC 1 cut(s) 552
MboI GATC 1 cut(s) 550
MboII GAAGA 1 cut(s) 393
MluCI AATT 5 cut(s) 22, 75, 92, 325, 366
MluI ACGCGT 1 cut(s) 268
MmeI TCCRAC 1 cut(s) 379
MnlI CCTC 4 cut(s) 50, 160, 352, 367
MseI TTAA 3 cut(s) 174, 200, 386
MspI CCGG 1 cut(s) 362
MspR9I CCNGG 1 cut(s) 362
MvnI CGCG 1 cut(s) 270
MwoI GCNNNNNNNGC 2 cut(s) 143, 347
NciI CCSGG 1 cut(s) 362
NdeII GATC 1 cut(s) 550
NlaIV GGNNCC 3 cut(s) 284, 456, 518
NmeAIII GCCGAG 1 cut(s) 493
NmuCI GTSAC 1 cut(s) 43
NspV TTCGAA 1 cut(s) 379
PfeI GAWTC 1 cut(s) 245
PkrI GCNGC 5 cut(s) 8, 139, 158, 340, 407
Ppu21I YACGTR 1 cut(s) 331
PshBI ATTAAT 1 cut(s) 386
PspN4I GGNNCC 3 cut(s) 284, 456, 518
PspPI GGNCC 2 cut(s) 431, 454
PsrI GAACNNNNNNTAC 2 cut(s) 258, 290
PstNI CAGNNNCTG 1 cut(s) 419
RsaI GTAC 2 cut(s) 17, 276
RsaNI GTAC 2 cut(s) 16, 275
SaqAI TTAA 3 cut(s) 174, 200, 386
SatI GCNGC 5 cut(s) 7, 138, 157, 339, 406
Sau3AI GATC 1 cut(s) 550
Sau96I GGNCC 2 cut(s) 431, 454
ScaI AGTACT 1 cut(s) 276
ScrFI CCNGG 1 cut(s) 362
SetI ASST 7 cut(s) 8, 21, 61, 171, 211, 333, 378
SfaNI GCATC 1 cut(s) 392
SfuI TTCGAA 1 cut(s) 379
SmlI CTYRAG 3 cut(s) 86, 100, 462
SmoI CTYRAG 3 cut(s) 86, 100, 462
Sse9I AATT 5 cut(s) 22, 75, 92, 325, 366
SsiI CCGC 1 cut(s) 157
StyD4I CCNGG 1 cut(s) 360
TaaI ACNGT 1 cut(s) 440
TaiI ACGT 1 cut(s) 333
TaqI TCGA 1 cut(s) 379
TasI AATT 5 cut(s) 22, 75, 92, 325, 366
TatI WGTACW 1 cut(s) 274
TauI GCSGC 1 cut(s) 159
TfiI GAWTC 1 cut(s) 245
Tru1I TTAA 3 cut(s) 174, 200, 386
Tru9I TTAA 3 cut(s) 174, 200, 386
TscAI CASTG 1 cut(s) 52
TseFI GTSAC 1 cut(s) 43
TseI GCWGC 4 cut(s) 6, 137, 338, 405
Tsp45I GTSAC 1 cut(s) 43
TspDTI ATGAA 1 cut(s) 283
TspGWI ACGGA 1 cut(s) 225
TspRI CASTG 1 cut(s) 52
VspI ATTAAT 1 cut(s) 386
XapI RAATTY 2 cut(s) 22, 366
ZrmI AGTACT 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.