Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

6242989 .. 6245566

Gene Structure 2578 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011033

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGTCTCTCTCCATTGGACATAACATCCTCCAAATATCTCTTTGCCTTGGCCAATGGCAACTTTTTGATAGCAAAAGCATTATTCATTGTGTTCTTGACGTGAACTCCAACGTAGGCACTCCTTACTTCTCAAGACTTGGTGGGATTGGCGGGTTTAGGCCATGGTTAGCTGCTGCAATTTCTGCCTCTGCCTCAATGAAGGGTTGTGTCAGGATTAGGGATTCCGTGTGTGGACGCCGCCTCGGTGATGATCTGGTACGGCAGCATTCAATTAGTGATGAAGTGGTCTGGACCCCTCCGGTGCGCAACAATGACTATGTTCTAGTGTTGTCAGCTCCGGTGAGGTCGGAGTCTAAGGGATACAAGCTGGAGAATTTGGCCGCGGTAGTGAGCGAGCAGGAGAAGAAGATAGAAGTTGGTGGCGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0009966 GO:0009968 GO:0010104 GO:0010105 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043565 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070297 GO:0070298 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902531 GO:1902532 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

143

Amino Acids

15.41

Weight (kDa)

8.41

Isoelectric Point (pI)

51.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	305
AccII	CGCG	1 cut(s)	383
AciI	CCGC	5 cut(s)	150, 238, 381, 383, 423
AcoI	YGGCCR	2 cut(s)	49, 378
AcsI	RAATTY	1 cut(s)	373
AcyI	GRCGYC	1 cut(s)	235
AfaI	GTAC	1 cut(s)	258
AgsI	TTSAA	1 cut(s)	270
AjiI	CACGTC	1 cut(s)	100
AluBI	AGCT	3 cut(s)	170, 335, 367
AluI	AGCT	3 cut(s)	170, 335, 367
Alw26I	GTCTC	1 cut(s)	9
AoxI	GGCC	3 cut(s)	49, 158, 378
ApeKI	GCWGC	3 cut(s)	170, 173, 262
ApoI	RAATTY	1 cut(s)	373
AspLEI	GCGC	1 cut(s)	306
AspS9I	GGNCC	1 cut(s)	291
AsuHPI	GGTGA	2 cut(s)	257, 352
AvaII	GGWCC	1 cut(s)	291
BalI	TGGCCA	1 cut(s)	51
BbvI	GCAGC	3 cut(s)	157, 160, 274
BceAI	ACGGC	1 cut(s)	275
BciVI	GTATCC	1 cut(s)	353
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	1 cut(s)	323
BfuI	GTATCC	1 cut(s)	353
BisI	GCNGC	5 cut(s)	171, 174, 238, 263, 381
BlsI	GCNGC	5 cut(s)	172, 175, 239, 264, 382
Bme18I	GGWCC	1 cut(s)	291
BmgBI	CACGTC	1 cut(s)	100
BmgT120I	GGNCC	1 cut(s)	291
BmiI	GGNNCC	1 cut(s)	293
BpmI	CTGGAG	1 cut(s)	389
BpuEI	CTTGAG	1 cut(s)	115
BsaHI	GRCGYC	1 cut(s)	235
BsaJI	CCNNGG	4 cut(s)	46, 161, 241, 381
BsaWI	WCCGGW	2 cut(s)	298, 337
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
BseDI	CCNNGG	4 cut(s)	46, 161, 241, 381
BseGI	GGATG	1 cut(s)	24
BseXI	GCAGC	3 cut(s)	157, 160, 274
Bsh1236I	CGCG	1 cut(s)	383
BshFI	GGCC	3 cut(s)	51, 160, 380
BsiSI	CCGG	2 cut(s)	299, 338
BsmAI	GTCTC	1 cut(s)	9
BsmI	GAATGC	1 cut(s)	265
BsnI	GGCC	3 cut(s)	51, 160, 380
Bsp143I	GATC	1 cut(s)	250
Bsp19I	CCATGG	1 cut(s)	161
BspACI	CCGC	5 cut(s)	150, 238, 381, 383, 423
BspANI	GGCC	3 cut(s)	51, 160, 380
BspFNI	CGCG	1 cut(s)	383
BspLI	GGNNCC	1 cut(s)	293
BssECI	CCNNGG	4 cut(s)	46, 161, 241, 381
BssMI	GATC	1 cut(s)	250
BssNI	GRCGYC	1 cut(s)	235
BssT1I	CCWWGG	2 cut(s)	46, 161
BstACI	GRCGYC	1 cut(s)	235
BstAPI	GCANNNNNTGC	1 cut(s)	182
BstC8I	GCNNGC	1 cut(s)	395
BstDEI	CTNAG	1 cut(s)	354
BstDSI	CCRYGG	2 cut(s)	161, 381
BstF5I	GGATG	1 cut(s)	24
BstFNI	CGCG	1 cut(s)	383
BstHHI	GCGC	1 cut(s)	306
BstKTI	GATC	1 cut(s)	253
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	1 cut(s)	250
BstMWI	GCNNNNNNNGC	1 cut(s)	182
BstUI	CGCG	1 cut(s)	383
BstV1I	GCAGC	3 cut(s)	157, 160, 274
BsuI	GTATCC	1 cut(s)	353
BsuRI	GGCC	3 cut(s)	51, 160, 380
BtgI	CCRYGG	2 cut(s)	161, 381
BtrI	CACGTC	1 cut(s)	100
BtsCI	GGATG	1 cut(s)	24
Cac8I	GCNNGC	1 cut(s)	395
CfoI	GCGC	1 cut(s)	306
Cfr13I	GGNCC	1 cut(s)	291
Cfr42I	CCGCGG	1 cut(s)	384
CseI	GACGC	1 cut(s)	243
Csp6I	GTAC	1 cut(s)	257
CviAII	CATG	1 cut(s)	162
CviJI	RGCY	6 cut(s)	51, 160, 170, 335, 367, 380
CviKI_1	RGCY	6 cut(s)	51, 160, 170, 335, 367, 380
CviQI	GTAC	1 cut(s)	257
DdeI	CTNAG	1 cut(s)	354
DpnI	GATC	1 cut(s)	252
DpnII	GATC	1 cut(s)	250
EaeI	YGGCCR	2 cut(s)	49, 378
Eco130I	CCWWGG	2 cut(s)	46, 161
Eco47I	GGWCC	1 cut(s)	291
EcoT14I	CCWWGG	2 cut(s)	46, 161
ErhI	CCWWGG	2 cut(s)	46, 161
FaeI	CATG	1 cut(s)	165
FaiI	YATR	3 cut(s)	21, 163, 318
FatI	CATG	1 cut(s)	161
FauI	CCCGC	1 cut(s)	143
Fnu4HI	GCNGC	5 cut(s)	171, 174, 238, 263, 381
FokI	GGATG	1 cut(s)	11
Fsp4HI	GCNGC	5 cut(s)	171, 174, 238, 263, 381
FspBI	CTAG	1 cut(s)	323
FspI	TGCGCA	1 cut(s)	305
GlaI	GCGC	1 cut(s)	305
GluI	GCNGC	5 cut(s)	171, 174, 238, 263, 381
GsuI	CTGGAG	1 cut(s)	389
HaeIII	GGCC	3 cut(s)	51, 160, 380
HapII	CCGG	2 cut(s)	299, 338
HgaI	GACGC	1 cut(s)	243
HhaI	GCGC	1 cut(s)	306
Hin1I	GRCGYC	1 cut(s)	235
Hin1II	CATG	1 cut(s)	165
Hin6I	GCGC	1 cut(s)	304
HinP1I	GCGC	1 cut(s)	304
HinfI	GANTC	2 cut(s)	221, 350
HpaII	CCGG	2 cut(s)	299, 338
HphI	GGTGA	2 cut(s)	257, 352
Hpy166II	GTNNAC	2 cut(s)	103, 233
Hpy188I	TCNGA	1 cut(s)	349
Hpy188III	TCNNGA	4 cut(s)	95, 132, 211, 289
Hpy8I	GTNNAC	2 cut(s)	103, 233
HpyAV	CCTTC	1 cut(s)	193
HpyCH4IV	ACGT	2 cut(s)	99, 111
HpyCH4V	TGCA	1 cut(s)	176
HpyF10VI	GCNNNNNNNGC	1 cut(s)	182
HpyF3I	CTNAG	1 cut(s)	354
HpySE526I	ACGT	2 cut(s)	99, 111
Hsp92I	GRCGYC	1 cut(s)	235
Hsp92II	CATG	1 cut(s)	165
HspAI	GCGC	1 cut(s)	304
KspI	CCGCGG	1 cut(s)	384
Kzo9I	GATC	1 cut(s)	250
LmnI	GCTCC	1 cut(s)	340
LpnPI	CCDG	7 cut(s)	196, 239, 274, 312, 351, 353, 383
Lsp1109I	GCAGC	3 cut(s)	157, 160, 274
MaeI	CTAG	1 cut(s)	323
MaeII	ACGT	2 cut(s)	99, 111
MalI	GATC	1 cut(s)	252
MboI	GATC	1 cut(s)	250
MboII	GAAGA	2 cut(s)	415, 418
MlsI	TGGCCA	1 cut(s)	51
MluCI	AATT	3 cut(s)	177, 270, 373
MluNI	TGGCCA	1 cut(s)	51
MlyI	GAGTC	1 cut(s)	359
MmeI	TCCRAC	2 cut(s)	132, 327
MnlI	CCTC	6 cut(s)	38, 196, 202, 251, 306, 336
Mox20I	TGGCCA	1 cut(s)	51
MscI	TGGCCA	1 cut(s)	51
Msp20I	TGGCCA	1 cut(s)	51
MspA1I	CMGCKG	1 cut(s)	383
MspI	CCGG	2 cut(s)	299, 338
Mva1269I	GAATGC	1 cut(s)	265
MvnI	CGCG	1 cut(s)	383
MwoI	GCNNNNNNNGC	1 cut(s)	182
NcoI	CCATGG	1 cut(s)	161
NdeII	GATC	1 cut(s)	250
NlaIII	CATG	1 cut(s)	165
NlaIV	GGNNCC	1 cut(s)	293
NsbI	TGCGCA	1 cut(s)	305
PctI	GAATGC	1 cut(s)	265
PfeI	GAWTC	1 cut(s)	221
PkrI	GCNGC	5 cut(s)	172, 175, 239, 264, 382
PleI	GAGTC	1 cut(s)	358
PpsI	GAGTC	1 cut(s)	358
PspN4I	GGNNCC	1 cut(s)	293
PspPI	GGNCC	1 cut(s)	291
RsaI	GTAC	1 cut(s)	258
RsaNI	GTAC	1 cut(s)	257
SacII	CCGCGG	1 cut(s)	384
SatI	GCNGC	5 cut(s)	171, 174, 238, 263, 381
Sau3AI	GATC	1 cut(s)	250
Sau96I	GGNCC	1 cut(s)	291
SchI	GAGTC	1 cut(s)	359
SetI	ASST	6 cut(s)	102, 114, 172, 337, 347, 369
Sfr303I	CCGCGG	1 cut(s)	384
SgrBI	CCGCGG	1 cut(s)	384
SinI	GGWCC	1 cut(s)	291
SmlI	CTYRAG	1 cut(s)	130
SmoI	CTYRAG	1 cut(s)	130
Sse9I	AATT	3 cut(s)	177, 270, 373
SsiI	CCGC	5 cut(s)	150, 238, 381, 383, 423
SspMI	CTAG	1 cut(s)	323
StyI	CCWWGG	2 cut(s)	46, 161
TaiI	ACGT	2 cut(s)	102, 114
TasI	AATT	3 cut(s)	177, 270, 373
TauI	GCSGC	2 cut(s)	240, 383
TfiI	GAWTC	1 cut(s)	221
TseI	GCWGC	3 cut(s)	170, 173, 262
TspDTI	ATGAA	3 cut(s)	74, 212, 294
TspGWI	ACGGA	1 cut(s)	214
VpaK11BI	GGWCC	1 cut(s)	291
XapI	RAATTY	1 cut(s)	373
XspI	CTAG	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.