Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

24041394 .. 24045103

Gene Structure 3710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012932

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGAACTCCTTGATAGAGTTAGGGGAGGTCAGAGAATTATTGCCTGCCTGGTTTGGAGGTGGGAGGAAACAAGGTTTAAGATCAGGTGCTAGACGAATATCAGAAAATATTTACTGGGATCATCAGAGGACAGATGGTTACTTTTGGTCTTGGAAAGCTAGGAAATTCTTCACCTGCTTCACAGCTGATGGGGATGAGGAGAATGGCGAAGGAGAAAGCAAGAACGAAGAATGCTGTTCAATGGGGCAGTCGAAGAGCTTGCAGCAGCTCACGAGAGGTGTCAATGGTTTGTATCCACTGGAGGATGATGGAACAGTGGTTGTTGATTTGTGTATGGGGCTGTTTGAAATGGGGAAACTGATTGAAGCTGCTGATTCAAGACTCATTGGTAAGTTTGACGAAGGTAGAGATGGAAAGGAAGCTGATGACTGGACTTGGTTCATTGCTTATGTGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0042742 GO:0043207 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

153

Amino Acids

17.28

Weight (kDa)

4.75

Isoelectric Point (pI)

42.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	182
Acc36I	ACCTGC	1 cut(s)	182
AclWI	GGATC	1 cut(s)	126
AcsI	RAATTY	1 cut(s)	164
AgsI	TTSAA	4 cut(s)	240, 347, 365, 378
AjnI	CCWGG	1 cut(s)	47
AluBI	AGCT	6 cut(s)	158, 185, 258, 268, 368, 422
AluI	AGCT	6 cut(s)	158, 185, 258, 268, 368, 422
Alw21I	GWGCWC	1 cut(s)	456
Alw44I	GTGCAC	1 cut(s)	452
AlwI	GGATC	1 cut(s)	126
ApaLI	GTGCAC	1 cut(s)	452
ApeKI	GCWGC	3 cut(s)	262, 265, 368
ApoI	RAATTY	1 cut(s)	164
Asp700I	GAANNNNTTC	1 cut(s)	167
AsuHPI	GGTGA	1 cut(s)	163
BaeGI	GKGCMC	1 cut(s)	456
BauI	CACGAG	1 cut(s)	271
Bbv12I	GWGCWC	1 cut(s)	456
BbvI	GCAGC	3 cut(s)	274, 277, 355
BccI	CCATC	4 cut(s)	128, 182, 302, 404
BcgI	CGANNNNNNTGC	2 cut(s)	241, 275
BciT130I	CCWGG	1 cut(s)	49
BciVI	GTATCC	1 cut(s)	303
BfaI	CTAG	2 cut(s)	90, 159
BfuAI	ACCTGC	1 cut(s)	182
BfuI	GTATCC	1 cut(s)	303
BisI	GCNGC	3 cut(s)	263, 266, 369
BlsI	GCNGC	3 cut(s)	264, 267, 370
Bme1390I	CCNGG	1 cut(s)	49
BmrFI	CCNGG	1 cut(s)	49
BmrI	ACTGGG	1 cut(s)	124
BmuI	ACTGGG	1 cut(s)	124
BpmI	CTGGAG	1 cut(s)	320
Bse1I	ACTGG	3 cut(s)	119, 303, 434
Bse3DI	GCAATG	1 cut(s)	441
BseBI	CCWGG	1 cut(s)	49
BseGI	GGATG	2 cut(s)	199, 310
BseMI	GCAATG	1 cut(s)	441
BseNI	ACTGG	3 cut(s)	119, 303, 434
BseRI	GAGGAG	1 cut(s)	212
BseSI	GKGCMC	1 cut(s)	456
BseXI	GCAGC	3 cut(s)	274, 277, 355
BsiHKAI	GWGCWC	1 cut(s)	456
BsmI	GAATGC	1 cut(s)	236
Bsp1286I	GDGCHC	1 cut(s)	456
Bsp143I	GATC	2 cut(s)	80, 118
BspMI	ACCTGC	1 cut(s)	182
BspPI	GGATC	1 cut(s)	126
BspQI	GCTCTTC	1 cut(s)	248
BsrDI	GCAATG	1 cut(s)	441
BsrI	ACTGG	3 cut(s)	119, 303, 434
BssMI	GATC	2 cut(s)	80, 118
BssSI	CACGAG	1 cut(s)	271
Bst2BI	CACGAG	1 cut(s)	271
Bst2UI	CCWGG	1 cut(s)	49
Bst4CI	ACNGT	1 cut(s)	316
Bst6I	CTCTTC	1 cut(s)	248
BstC8I	GCNNGC	2 cut(s)	45, 260
BstF5I	GGATG	2 cut(s)	199, 310
BstKTI	GATC	2 cut(s)	83, 121
BstMBI	GATC	2 cut(s)	80, 118
BstNI	CCWGG	1 cut(s)	49
BstSCI	CCNGG	1 cut(s)	47
BstSLI	GKGCMC	1 cut(s)	456
BstV1I	GCAGC	3 cut(s)	274, 277, 355
BsuI	GTATCC	1 cut(s)	303
BtsCI	GGATG	2 cut(s)	199, 310
BtsIMutI	CAGTG	3 cut(s)	296, 321, 454
BveI	ACCTGC	1 cut(s)	182
Cac8I	GCNNGC	2 cut(s)	45, 260
CviJI	RGCY	7 cut(s)	158, 185, 258, 268, 340, 368, 422
CviKI_1	RGCY	7 cut(s)	158, 185, 258, 268, 340, 368, 422
DpnI	GATC	2 cut(s)	82, 120
DpnII	GATC	2 cut(s)	80, 118
Eam1104I	CTCTTC	1 cut(s)	248
EarI	CTCTTC	1 cut(s)	248
EcoRII	CCWGG	1 cut(s)	47
FaiI	YATR	2 cut(s)	335, 450
Fnu4HI	GCNGC	3 cut(s)	263, 266, 369
FokI	GGATG	2 cut(s)	206, 317
Fsp4HI	GCNGC	3 cut(s)	263, 266, 369
FspBI	CTAG	2 cut(s)	90, 159
GluI	GCNGC	3 cut(s)	263, 266, 369
GsuI	CTGGAG	1 cut(s)	320
HinfI	GANTC	2 cut(s)	374, 381
HphI	GGTGA	1 cut(s)	163
Hpy166II	GTNNAC	1 cut(s)	454
Hpy188I	TCNGA	3 cut(s)	32, 103, 126
Hpy188III	TCNNGA	2 cut(s)	271, 378
Hpy8I	GTNNAC	1 cut(s)	454
HpyAV	CCTTC	2 cut(s)	203, 395
HpyCH4III	ACNGT	1 cut(s)	316
HpyCH4V	TGCA	2 cut(s)	262, 454
Kzo9I	GATC	2 cut(s)	80, 118
LguI	GCTCTTC	1 cut(s)	248
LpnPI	CCDG	8 cut(s)	34, 57, 61, 69, 100, 187, 284, 415
Lsp1109I	GCAGC	3 cut(s)	274, 277, 355
MaeI	CTAG	2 cut(s)	90, 159
MaeIII	GTNAC	1 cut(s)	137
MalI	GATC	2 cut(s)	82, 120
MboI	GATC	2 cut(s)	80, 118
MboII	GAAGA	3 cut(s)	160, 239, 265
MhlI	GDGCHC	1 cut(s)	456
MluCI	AATT	2 cut(s)	35, 164
MlyI	GAGTC	1 cut(s)	375
MnlI	CCTC	7 cut(s)	19, 50, 57, 120, 190, 269, 295
MroXI	GAANNNNTTC	1 cut(s)	167
MseI	TTAA	1 cut(s)	77
MspA1I	CMGCKG	1 cut(s)	185
MspR9I	CCNGG	1 cut(s)	49
Mva1269I	GAATGC	1 cut(s)	236
MvaI	CCWGG	1 cut(s)	49
NdeII	GATC	2 cut(s)	80, 118
PaqCI	CACCTGC	1 cut(s)	182
PciSI	GCTCTTC	1 cut(s)	248
PctI	GAATGC	1 cut(s)	236
PdmI	GAANNNNTTC	1 cut(s)	167
PfeI	GAWTC	1 cut(s)	374
PkrI	GCNGC	3 cut(s)	264, 267, 370
PleI	GAGTC	1 cut(s)	375
PpsI	GAGTC	1 cut(s)	375
Psp6I	CCWGG	1 cut(s)	47
PspGI	CCWGG	1 cut(s)	47
PvuII	CAGCTG	1 cut(s)	185
SapI	GCTCTTC	1 cut(s)	248
SaqAI	TTAA	1 cut(s)	77
SatI	GCNGC	3 cut(s)	263, 266, 369
Sau3AI	GATC	2 cut(s)	80, 118
SchI	GAGTC	1 cut(s)	375
ScrFI	CCNGG	1 cut(s)	49
SduI	GDGCHC	1 cut(s)	456
Sse9I	AATT	2 cut(s)	35, 164
SspI	AATATT	1 cut(s)	109
SspMI	CTAG	2 cut(s)	90, 159
StyD4I	CCNGG	1 cut(s)	47
TaaI	ACNGT	1 cut(s)	316
TaqI	TCGA	1 cut(s)	251
TasI	AATT	2 cut(s)	35, 164
TfiI	GAWTC	1 cut(s)	374
Tru1I	TTAA	1 cut(s)	77
Tru9I	TTAA	1 cut(s)	77
TscAI	CASTG	2 cut(s)	303, 321
TseI	GCWGC	3 cut(s)	262, 265, 368
TspDTI	ATGAA	2 cut(s)	17, 430
TspRI	CASTG	2 cut(s)	303, 321
VneI	GTGCAC	1 cut(s)	452
XapI	RAATTY	1 cut(s)	164
XmnI	GAANNNNTTC	1 cut(s)	167
XspI	CTAG	2 cut(s)	90, 159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.