RLG00000014348

Receptor-like protein 12

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
N/A
Physical Location & Seq
Forward (+)
51890579 .. 51892724
2146 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014348

Sequence Viewer

Length: 1092 bp
ATGATGATCAGAGGGTTCAGGTTTCTCATGATGATCAGGTGGCTCATGAGCACCTCCTCCCACAATGTGACTTCTTCATGGAAATCAGCATGGGATCAAAACAGCAGTTGTTGCTCATGGGATGGAGTCGAGTGTGATGAGAAGACAGGTCATGTGATTGGTCTTGATCTTAGTAGCAGCTATCTCTATGGCTCTTTAAGCTCCAATAACACCTTATTCAGTCTTGTTCATCTTCAGAGACTGAACCTTACCGATAATGACTTTAATTACTCTCAAATTCAAATTCCTACTAGCATTAGGAACTTTCCAAGGCTCAGGTATCTCAATCTCTCTAACGCTTATTTTTCTGGTCAAGTCCCATCTGAAATTTCACAACTGACCGAGTTGTCATCCCTTGATCTATCTAGCACTTATAAGATGTCTGGAAATGGTGGGATGTTCTCCGACAATGAATTGTTGAGAAGCCTAGCTCAAAACTTAACTAGCCTAAAAAAACTTCATCTTTCTGGGATTAATATATCATCCACAATACCCAATACCTTGGCAAATTTGTCAAATTTGGCATCCCTCCTCCTTCATGATTGCGAGCTGCATAGAGAAATTCCCGAGTCATTATCTAGTGTAGCAAGTCTCAAGAGACGTATTCCATCTGGTAATAATCTGAGCGGTATAGTGGAGTTCTTTAAATTTCTTAAGCTACCAAATCTAAAATGGGTAGATCTATCTGATAACAACTTGGATCTGATCACTGAAACCAGAACTATGAATGCATCTACCATTTCAAGGTTGAGTGGCATGCTTCCTCGTTGTCTTGGAAACATCAGTAGTGGTCTTGAAGGAGGTCTTCAAGATTTAAGTGTTGGAAACAACCTTTTTCATGGAACTCTTCCTCAAGTATGCACCACCAATGGAAGCAGTTTGATGATGATGGATGTTAGTCTTAACCAATTGCAGGGGAAATTACCGAGGTCATTGGCGAATTGTTTGGCACCTGAGTCTCTTGTTCTGTCAAGTAATAAGTTTGATGATGTTTTCCCCATTTGGTACGTTGGAGACTCTTACAGAGTTAAAAGTTTTGGCAATGAGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

364

Amino Acids

40.27

Weight (kDa)

6.18

Isoelectric Point (pI)

42.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_Zer-1 PF25013 77 - 176 6.4e-06 Zer-1-like, Leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 414
AasI GACNNNNNNGTC 1 cut(s) 385
AccB1I GGYRCC 1 cut(s) 988
AccBSI CCGCTC 1 cut(s) 666
AciI CCGC 1 cut(s) 666
AclWI GGATC 2 cut(s) 102, 747
AcsI RAATTY 7 cut(s) 276, 282, 366, 547, 556, 600, 686
AcuI CTGAAG 1 cut(s) 218
AdeI CACNNNGTG 1 cut(s) 67
AfaI GTAC 1 cut(s) 1046
AfiI CCNNNNNNNGG 2 cut(s) 783, 952
AflII CTTAAG 1 cut(s) 692
AgsI TTSAA 4 cut(s) 281, 783, 836, 848
AluBI AGCT 5 cut(s) 180, 201, 470, 589, 697
AluI AGCT 5 cut(s) 180, 201, 470, 589, 697
Alw21I GWGCWC 1 cut(s) 53
Alw26I GTCTC 5 cut(s) 232, 631, 635, 1002, 1047
AlwI GGATC 2 cut(s) 102, 747
AlwNI CAGNNNCTG 1 cut(s) 241
Ama87I CYCGRG 1 cut(s) 605
ApeKI GCWGC 2 cut(s) 177, 589
ApoI RAATTY 7 cut(s) 276, 282, 366, 547, 556, 600, 686
AseI ATTAAT 1 cut(s) 513
AvaI CYCGRG 1 cut(s) 605
BanI GGYRCC 1 cut(s) 988
BbsI GAAGAC 2 cut(s) 149, 836
Bbv12I GWGCWC 1 cut(s) 53
BbvI GCAGC 2 cut(s) 189, 576
BccI CCATC 4 cut(s) 116, 367, 655, 922
BclI TGATCA 3 cut(s) 6, 33, 744
BcoDI GTCTC 5 cut(s) 232, 631, 635, 1002, 1047
BfaI CTAG 5 cut(s) 291, 405, 467, 483, 618
BfrI CTTAAG 1 cut(s) 692
BglII AGATCT 1 cut(s) 718
BisI GCNGC 2 cut(s) 178, 590
BlsI GCNGC 2 cut(s) 179, 591
BmeT110I CYCGRG 1 cut(s) 605
BmiI GGNNCC 1 cut(s) 990
BmsI GCATC 2 cut(s) 572, 779
BpiI GAAGAC 2 cut(s) 149, 836
Bpu10I CCTNAGC 1 cut(s) 314
BpuEI CTTGAG 2 cut(s) 617, 876
BsaJI CCNNGG 3 cut(s) 308, 540, 965
Bsc4I CCNNNNNNNGG 2 cut(s) 783, 952
Bse3DI GCAATG 1 cut(s) 1087
BseDI CCNNGG 3 cut(s) 308, 540, 965
BseGI GGATG 6 cut(s) 127, 389, 441, 521, 563, 937
BseLI CCNNNNNNNGG 2 cut(s) 783, 952
BseMI GCAATG 1 cut(s) 1087
BseMII CTCAG 3 cut(s) 328, 653, 984
BseRI GAGGAG 2 cut(s) 46, 560
BseXI GCAGC 2 cut(s) 189, 576
BshNI GGYRCC 1 cut(s) 988
BsiHKAI GWGCWC 1 cut(s) 53
BsiHKCI CYCGRG 1 cut(s) 605
BslFI GGGAC 1 cut(s) 341
BslI CCNNNNNNNGG 2 cut(s) 783, 952
BsmAI GTCTC 5 cut(s) 232, 631, 635, 1002, 1047
BsmBI CGTCTC 1 cut(s) 631
BsmFI GGGAC 1 cut(s) 341
BsmI GAATGC 1 cut(s) 772
BsoBI CYCGRG 1 cut(s) 605
Bsp1286I GDGCHC 1 cut(s) 53
Bsp143I GATC 8 cut(s) 6, 33, 94, 166, 397, 718, 739, 744
BspACI CCGC 1 cut(s) 666
BspCNI CTCAG 3 cut(s) 327, 654, 985
BspHI TCATGA 3 cut(s) 27, 45, 577
BspLI GGNNCC 1 cut(s) 990
BspPI GGATC 2 cut(s) 102, 747
BspT107I GGYRCC 1 cut(s) 988
BspTI CTTAAG 1 cut(s) 692
BsrBI CCGCTC 1 cut(s) 666
BsrDI GCAATG 1 cut(s) 1087
BssECI CCNNGG 3 cut(s) 308, 540, 965
BssMI GATC 8 cut(s) 6, 33, 94, 166, 397, 718, 739, 744
BssT1I CCWWGG 2 cut(s) 308, 540
Bst6I CTCTTC 1 cut(s) 891
BstAFI CTTAAG 1 cut(s) 692
BstAPI GCANNNNNTGC 1 cut(s) 111
BstC8I GCNNGC 2 cut(s) 587, 797
BstDEI CTNAG 4 cut(s) 170, 314, 662, 993
BstF5I GGATG 6 cut(s) 127, 389, 441, 521, 563, 937
BstKTI GATC 8 cut(s) 9, 36, 97, 169, 400, 721, 742, 747
BstMAI GTCTC 5 cut(s) 232, 631, 635, 1002, 1047
BstMBI GATC 8 cut(s) 6, 33, 94, 166, 397, 718, 739, 744
BstMWI GCNNNNNNNGC 2 cut(s) 111, 198
BstNSI RCATGY 1 cut(s) 799
BstV1I GCAGC 2 cut(s) 189, 576
BstV2I GAAGAC 2 cut(s) 149, 836
BstX2I RGATCY 2 cut(s) 718, 739
BstXI CCANNNNNNTGG 1 cut(s) 541
BstYI RGATCY 2 cut(s) 718, 739
BtsCI GGATG 6 cut(s) 127, 389, 441, 521, 563, 937
BtsIMutI CAGTG 1 cut(s) 747
Cac8I GCNNGC 2 cut(s) 587, 797
CaiI CAGNNNCTG 1 cut(s) 241
CciI TCATGA 3 cut(s) 27, 45, 577
Csp6I GTAC 1 cut(s) 1045
CviAII CATG 9 cut(s) 28, 46, 78, 90, 117, 152, 578, 796, 878
CviQI GTAC 1 cut(s) 1045
DdeI CTNAG 4 cut(s) 170, 314, 662, 993
DpnI GATC 8 cut(s) 8, 35, 96, 168, 399, 720, 741, 746
DpnII GATC 8 cut(s) 6, 33, 94, 166, 397, 718, 739, 744
DraI TTTAAA 1 cut(s) 685
DraIII CACNNNGTG 1 cut(s) 67
DrdI GACNNNNNNGTC 1 cut(s) 385
DseDI GACNNNNNNGTC 1 cut(s) 385
Eam1104I CTCTTC 1 cut(s) 891
EarI CTCTTC 1 cut(s) 891
Eco130I CCWWGG 2 cut(s) 308, 540
Eco57I CTGAAG 1 cut(s) 218
Eco88I CYCGRG 1 cut(s) 605
EcoT14I CCWWGG 2 cut(s) 308, 540
EcoT22I ATGCAT 1 cut(s) 772
ErhI CCWWGG 2 cut(s) 308, 540
Esp3I CGTCTC 1 cut(s) 631
FaeI CATG 9 cut(s) 31, 49, 81, 93, 120, 155, 581, 799, 881
FalI AAGNNNNNCTT 2 cut(s) 828, 860
FaqI GGGAC 1 cut(s) 341
FatI CATG 9 cut(s) 27, 45, 77, 89, 116, 151, 577, 795, 877
FbaI TGATCA 3 cut(s) 6, 33, 744
Fnu4HI GCNGC 2 cut(s) 178, 590
FokI GGATG 6 cut(s) 134, 376, 448, 508, 550, 944
Fsp4HI GCNGC 2 cut(s) 178, 590
FspBI CTAG 5 cut(s) 291, 405, 467, 483, 618
GluI GCNGC 2 cut(s) 178, 590
Hin1II CATG 9 cut(s) 31, 49, 81, 93, 120, 155, 581, 799, 881
HinfI GANTC 4 cut(s) 126, 608, 995, 1055
Hpy188I TCNGA 7 cut(s) 11, 237, 364, 445, 663, 727, 744
Hpy188III TCNNGA 9 cut(s) 28, 46, 164, 423, 578, 605, 634, 833, 848
HpyAV CCTTC 2 cut(s) 584, 830
HpyCH4IV ACGT 2 cut(s) 640, 1047
HpyCH4V TGCA 4 cut(s) 592, 770, 900, 952
HpyF10VI GCNNNNNNNGC 2 cut(s) 111, 198
HpyF3I CTNAG 4 cut(s) 170, 314, 662, 993
HpySE526I ACGT 2 cut(s) 640, 1047
Hsp92II CATG 9 cut(s) 31, 49, 81, 93, 120, 155, 581, 799, 881
Ksp22I TGATCA 3 cut(s) 6, 33, 744
Kzo9I GATC 8 cut(s) 6, 33, 94, 166, 397, 718, 739, 744
LmnI GCTCC 1 cut(s) 206
Lsp1109I GCAGC 2 cut(s) 189, 576
LweI GCATC 2 cut(s) 572, 779
MaeI CTAG 5 cut(s) 291, 405, 467, 483, 618
MaeII ACGT 2 cut(s) 640, 1047
MaeIII GTNAC 1 cut(s) 67
MalI GATC 8 cut(s) 8, 35, 96, 168, 399, 720, 741, 746
MbiI CCGCTC 1 cut(s) 666
MboI GATC 8 cut(s) 6, 33, 94, 166, 397, 718, 739, 744
MboII GAAGA 5 cut(s) 66, 154, 224, 836, 878
MfeI CAATTG 1 cut(s) 947
MflI RGATCY 2 cut(s) 718, 739
MhlI GDGCHC 1 cut(s) 53
MlyI GAGTC 4 cut(s) 135, 617, 1004, 1049
MmeI TCCRAC 3 cut(s) 468, 841, 1030
Mph1103I ATGCAT 1 cut(s) 772
MseI TTAA 9 cut(s) 197, 264, 479, 513, 684, 693, 854, 942, 1068
MspCI CTTAAG 1 cut(s) 692
MunI CAATTG 1 cut(s) 947
Mva1269I GAATGC 1 cut(s) 772
MwoI GCNNNNNNNGC 2 cut(s) 111, 198
NdeII GATC 8 cut(s) 6, 33, 94, 166, 397, 718, 739, 744
NlaIII CATG 9 cut(s) 31, 49, 81, 93, 120, 155, 581, 799, 881
NlaIV GGNNCC 1 cut(s) 990
NmuCI GTSAC 1 cut(s) 67
NsiI ATGCAT 1 cut(s) 772
NspI RCATGY 1 cut(s) 799
PaeI GCATGC 1 cut(s) 799
PagI TCATGA 3 cut(s) 27, 45, 577
PctI GAATGC 1 cut(s) 772
PkrI GCNGC 2 cut(s) 179, 591
PleI GAGTC 4 cut(s) 134, 616, 1003, 1049
PpsI GAGTC 4 cut(s) 134, 616, 1003, 1049
PshBI ATTAAT 1 cut(s) 513
PsiI TTATAA 1 cut(s) 414
PspN4I GGNNCC 1 cut(s) 990
PstNI CAGNNNCTG 1 cut(s) 241
PsuI RGATCY 2 cut(s) 718, 739
RsaI GTAC 1 cut(s) 1046
RsaNI GTAC 1 cut(s) 1045
SaqAI TTAA 9 cut(s) 197, 264, 479, 513, 684, 693, 854, 942, 1068
SatI GCNGC 2 cut(s) 178, 590
Sau3AI GATC 8 cut(s) 6, 33, 94, 166, 397, 718, 739, 744
SchI GAGTC 4 cut(s) 135, 617, 1004, 1049
SduI GDGCHC 1 cut(s) 53
SfaNI GCATC 2 cut(s) 572, 779
SmlI CTYRAG 3 cut(s) 632, 692, 891
SmoI CTYRAG 3 cut(s) 632, 692, 891
SphI GCATGC 1 cut(s) 799
SsiI CCGC 1 cut(s) 666
SspMI CTAG 5 cut(s) 291, 405, 467, 483, 618
StyI CCWWGG 2 cut(s) 308, 540
TaiI ACGT 2 cut(s) 643, 1050
TaqI TCGA 1 cut(s) 129
TaqII GACCGA 1 cut(s) 395
Tru1I TTAA 9 cut(s) 197, 264, 479, 513, 684, 693, 854, 942, 1068
Tru9I TTAA 9 cut(s) 197, 264, 479, 513, 684, 693, 854, 942, 1068
TscAI CASTG 1 cut(s) 754
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 2 cut(s) 177, 589
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 7 cut(s) 66, 218, 465, 488, 566, 779, 866
TspRI CASTG 1 cut(s) 754
Vha464I CTTAAG 1 cut(s) 692
VspI ATTAAT 1 cut(s) 513
XapI RAATTY 7 cut(s) 276, 282, 366, 547, 556, 600, 686
XceI RCATGY 1 cut(s) 799
XcmI CCANNNNNNNNNTGG 1 cut(s) 708
XspI CTAG 5 cut(s) 291, 405, 467, 483, 618
Zsp2I ATGCAT 1 cut(s) 772
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.