Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

54929701 .. 54930178

Gene Structure 478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014573

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGTCCCACTCCAAACTCAAACGGGTCTTCAAGAGCTGTCTCGAAGATTCTTTGGTCCCCACCGTAGTCTGGGTGGCCAACCGCGACCGCCCCGTCAAGAATCTCACTTCAGCCAGACTCGAAATCACAGCCACCGACGGCCGGCTCGTCGTTCTAGACTCCGATAACTCGACTCTCTGGGCCAGCCAGAACACCGCCGCAGCCGTCGGCGCCCAAGTCGTGCTCTTGGAGAGCGGCAATCTGGTGCTGCTCACCCACTCCGGGGAACTCGCGTGGCAGAGCTTCGATCACCCGGCTGACACGTGGCTCCCCGGCATGAATCTGACGGCGGAGCGGGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase S_locus_glycop

Protein Analysis

114

Amino Acids

12.3

Weight (kDa)

5.83

Isoelectric Point (pI)

33.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	21 - 111	1.4e-28	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	92
AccB1I	GGYRCC	1 cut(s)	209
AccBSI	CCGCTC	2 cut(s)	234, 334
AccII	CGCG	2 cut(s)	84, 272
AciI	CCGC	7 cut(s)	82, 88, 195, 198, 234, 329, 334
AcoI	YGGCCR	2 cut(s)	75, 139
AcuI	CTGAAG	1 cut(s)	93
AcvI	CACGTG	1 cut(s)	303
AcyI	GRCGYC	1 cut(s)	210
AfiI	CCNNNNNNNGG	4 cut(s)	69, 141, 261, 262
AflIII	ACRYGT	1 cut(s)	300
AgsI	TTSAA	1 cut(s)	31
AluBI	AGCT	2 cut(s)	36, 282
AluI	AGCT	2 cut(s)	36, 282
Alw21I	GWGCWC	1 cut(s)	225
Alw26I	GTCTC	1 cut(s)	44
AoxI	GGCC	3 cut(s)	75, 139, 180
ApeKI	GCWGC	2 cut(s)	200, 247
AspLEI	GCGC	1 cut(s)	212
AspS9I	GGNCC	2 cut(s)	55, 180
AsuC2I	CCSGG	3 cut(s)	262, 293, 312
AsuHPI	GGTGA	2 cut(s)	244, 281
AvaII	GGWCC	1 cut(s)	55
BalI	TGGCCA	1 cut(s)	77
BanI	GGYRCC	1 cut(s)	209
BbrPI	CACGTG	1 cut(s)	303
BbsI	GAAGAC	1 cut(s)	19
Bbv12I	GWGCWC	1 cut(s)	225
BbvI	GCAGC	2 cut(s)	212, 234
BceAI	ACGGC	2 cut(s)	154, 188
BcnI	CCSGG	3 cut(s)	262, 293, 312
BcoDI	GTCTC	1 cut(s)	44
BfaI	CTAG	1 cut(s)	155
BfoI	RGCGCY	1 cut(s)	213
BisI	GCNGC	4 cut(s)	198, 201, 235, 248
BlsI	GCNGC	4 cut(s)	199, 202, 236, 249
Bme1390I	CCNGG	3 cut(s)	262, 293, 312
Bme18I	GGWCC	1 cut(s)	55
BmgT120I	GGNCC	2 cut(s)	55, 180
BmiI	GGNNCC	3 cut(s)	57, 211, 308
BmrFI	CCNGG	3 cut(s)	262, 293, 312
BpiI	GAAGAC	1 cut(s)	19
BpuMI	CCSGG	3 cut(s)	262, 293, 312
BsaAI	YACGTR	1 cut(s)	303
BsaHI	GRCGYC	1 cut(s)	210
BsaJI	CCNNGG	2 cut(s)	261, 310
Bsc4I	CCNNNNNNNGG	4 cut(s)	69, 141, 261, 262
Bse118I	RCCGGY	1 cut(s)	141
BseDI	CCNNGG	2 cut(s)	261, 310
BseLI	CCNNNNNNNGG	4 cut(s)	69, 141, 261, 262
BseX3I	CGGCCG	1 cut(s)	139
BseXI	GCAGC	2 cut(s)	212, 234
Bsh1236I	CGCG	2 cut(s)	84, 272
Bsh1285I	CGRYCG	2 cut(s)	88, 142
BshFI	GGCC	3 cut(s)	77, 141, 182
BshNI	GGYRCC	1 cut(s)	209
BsiEI	CGRYCG	2 cut(s)	88, 142
BsiHKAI	GWGCWC	1 cut(s)	225
BsiSI	CCGG	4 cut(s)	142, 261, 293, 312
BslFI	GGGAC	1 cut(s)	41
BslI	CCNNNNNNNGG	4 cut(s)	69, 141, 261, 262
BsmAI	GTCTC	1 cut(s)	44
BsmFI	GGGAC	1 cut(s)	41
BsnI	GGCC	3 cut(s)	77, 141, 182
Bsp1286I	GDGCHC	1 cut(s)	225
Bsp143I	GATC	1 cut(s)	286
BspACI	CCGC	7 cut(s)	82, 88, 195, 198, 234, 329, 334
BspANI	GGCC	3 cut(s)	77, 141, 182
BspFNI	CGCG	2 cut(s)	84, 272
BspLI	GGNNCC	3 cut(s)	57, 211, 308
BspT107I	GGYRCC	1 cut(s)	209
BsrBI	CCGCTC	2 cut(s)	234, 334
BsrFI	RCCGGY	1 cut(s)	141
BssAI	RCCGGY	1 cut(s)	141
BssECI	CCNNGG	2 cut(s)	261, 310
BssMI	GATC	1 cut(s)	286
BssNI	GRCGYC	1 cut(s)	210
Bst4CI	ACNGT	1 cut(s)	64
BstACI	GRCGYC	1 cut(s)	210
BstBAI	YACGTR	1 cut(s)	303
BstC8I	GCNNGC	2 cut(s)	143, 184
BstFNI	CGCG	2 cut(s)	84, 272
BstH2I	RGCGCY	1 cut(s)	213
BstHHI	GCGC	1 cut(s)	212
BstKTI	GATC	1 cut(s)	289
BstMAI	GTCTC	1 cut(s)	44
BstMBI	GATC	1 cut(s)	286
BstMCI	CGRYCG	2 cut(s)	88, 142
BstMWI	GCNNNNNNNGC	1 cut(s)	209
BstSCI	CCNGG	3 cut(s)	260, 291, 310
BstUI	CGCG	2 cut(s)	84, 272
BstV1I	GCAGC	2 cut(s)	212, 234
BstV2I	GAAGAC	1 cut(s)	19
BstZI	CGGCCG	1 cut(s)	139
BsuRI	GGCC	3 cut(s)	77, 141, 182
Cac8I	GCNNGC	2 cut(s)	143, 184
CfoI	GCGC	1 cut(s)	212
Cfr10I	RCCGGY	1 cut(s)	141
Cfr13I	GGNCC	2 cut(s)	55, 180
CviAII	CATG	1 cut(s)	316
DinI	GGCGCC	1 cut(s)	211
DpnI	GATC	1 cut(s)	288
DpnII	GATC	1 cut(s)	286
DrdI	GACNNNNNNGTC	1 cut(s)	92
DseDI	GACNNNNNNGTC	1 cut(s)	92
EaeI	YGGCCR	2 cut(s)	75, 139
EagI	CGGCCG	1 cut(s)	139
EclXI	CGGCCG	1 cut(s)	139
Eco47I	GGWCC	1 cut(s)	55
Eco52I	CGGCCG	1 cut(s)	139
Eco57I	CTGAAG	1 cut(s)	93
Eco72I	CACGTG	1 cut(s)	303
EgeI	GGCGCC	1 cut(s)	211
EheI	GGCGCC	1 cut(s)	211
FaeI	CATG	1 cut(s)	319
FaiI	YATR	1 cut(s)	317
FaqI	GGGAC	1 cut(s)	41
FatI	CATG	1 cut(s)	315
FauI	CCCGC	1 cut(s)	327
Fnu4HI	GCNGC	4 cut(s)	198, 201, 235, 248
Fsp4HI	GCNGC	4 cut(s)	198, 201, 235, 248
FspBI	CTAG	1 cut(s)	155
GlaI	GCGC	1 cut(s)	211
GluI	GCNGC	4 cut(s)	198, 201, 235, 248
HaeII	RGCGCY	1 cut(s)	213
HaeIII	GGCC	3 cut(s)	77, 141, 182
HapII	CCGG	4 cut(s)	142, 261, 293, 312
HhaI	GCGC	1 cut(s)	212
Hin1I	GRCGYC	1 cut(s)	210
Hin1II	CATG	1 cut(s)	319
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HinfI	GANTC	6 cut(s)	47, 100, 117, 158, 172, 319
HpaII	CCGG	4 cut(s)	142, 261, 293, 312
HphI	GGTGA	2 cut(s)	244, 281
Hpy188I	TCNGA	2 cut(s)	163, 324
Hpy188III	TCNNGA	4 cut(s)	31, 41, 97, 155
Hpy99I	CGWCG	3 cut(s)	140, 152, 209
HpyCH4III	ACNGT	1 cut(s)	64
HpyCH4IV	ACGT	1 cut(s)	302
HpyF10VI	GCNNNNNNNGC	1 cut(s)	209
HpySE526I	ACGT	1 cut(s)	302
Hsp92I	GRCGYC	1 cut(s)	210
Hsp92II	CATG	1 cut(s)	319
HspAI	GCGC	1 cut(s)	210
KasI	GGCGCC	1 cut(s)	209
KroI	GCCGGC	1 cut(s)	141
KroNI	GCCGGC	1 cut(s)	143
Kzo9I	GATC	1 cut(s)	286
LmnI	GCTCC	2 cut(s)	312, 331
Lsp1109I	GCAGC	2 cut(s)	212, 234
MaeI	CTAG	1 cut(s)	155
MaeII	ACGT	1 cut(s)	302
MalI	GATC	1 cut(s)	288
MbiI	CCGCTC	2 cut(s)	234, 334
MboI	GATC	1 cut(s)	286
MboII	GAAGA	2 cut(s)	19, 56
MhlI	GDGCHC	1 cut(s)	225
MlsI	TGGCCA	1 cut(s)	77
MluNI	TGGCCA	1 cut(s)	77
Mly113I	GGCGCC	1 cut(s)	210
MlyI	GAGTC	3 cut(s)	111, 152, 166
Mox20I	TGGCCA	1 cut(s)	77
MroNI	GCCGGC	1 cut(s)	141
MscI	TGGCCA	1 cut(s)	77
Msp20I	TGGCCA	1 cut(s)	77
MspI	CCGG	4 cut(s)	142, 261, 293, 312
MspR9I	CCNGG	3 cut(s)	262, 293, 312
MvnI	CGCG	2 cut(s)	84, 272
MwoI	GCNNNNNNNGC	1 cut(s)	209
NaeI	GCCGGC	1 cut(s)	143
NarI	GGCGCC	1 cut(s)	210
NciI	CCSGG	3 cut(s)	262, 293, 312
NdeII	GATC	1 cut(s)	286
NgoMIV	GCCGGC	1 cut(s)	141
NlaIII	CATG	1 cut(s)	319
NlaIV	GGNNCC	3 cut(s)	57, 211, 308
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PdiI	GCCGGC	1 cut(s)	143
PfeI	GAWTC	3 cut(s)	47, 100, 319
PkrI	GCNGC	4 cut(s)	199, 202, 236, 249
PleI	GAGTC	3 cut(s)	111, 152, 166
PluTI	GGCGCC	1 cut(s)	213
PmaCI	CACGTG	1 cut(s)	303
PmlI	CACGTG	1 cut(s)	303
PpsI	GAGTC	3 cut(s)	111, 152, 166
Ppu21I	YACGTR	1 cut(s)	303
PspCI	CACGTG	1 cut(s)	303
PspN4I	GGNNCC	3 cut(s)	57, 211, 308
PspPI	GGNCC	2 cut(s)	55, 180
SatI	GCNGC	4 cut(s)	198, 201, 235, 248
Sau3AI	GATC	1 cut(s)	286
Sau96I	GGNCC	2 cut(s)	55, 180
SchI	GAGTC	3 cut(s)	111, 152, 166
ScrFI	CCNGG	3 cut(s)	262, 293, 312
SduI	GDGCHC	1 cut(s)	225
SetI	ASST	3 cut(s)	38, 284, 305
SfoI	GGCGCC	1 cut(s)	211
SinI	GGWCC	1 cut(s)	55
SsiI	CCGC	7 cut(s)	82, 88, 195, 198, 234, 329, 334
SspDI	GGCGCC	1 cut(s)	209
SspMI	CTAG	1 cut(s)	155
StyD4I	CCNGG	3 cut(s)	260, 291, 310
TaaI	ACNGT	1 cut(s)	64
TaiI	ACGT	1 cut(s)	305
TaqI	TCGA	4 cut(s)	42, 120, 170, 285
TauI	GCSGC	2 cut(s)	200, 237
TfiI	GAWTC	3 cut(s)	47, 100, 319
TseI	GCWGC	2 cut(s)	200, 247
TspDTI	ATGAA	1 cut(s)	332
VpaK11BI	GGWCC	1 cut(s)	55
XbaI	TCTAGA	1 cut(s)	154
XspI	CTAG	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.