Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

55000599 .. 55002291

Gene Structure 1693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014580

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGTCCCTTACTACCACGATAAAATCCAGGGATAAATACATCAGCAGCATCAGCTTCAACGCGTCACGTAATCAATTGCATCCCACAGTAGTTTATGAGCATTTATCCTCAATTCCATCGCTGTACTATCAGGCTTATTATCACTCTCAGCGACCCATCCCCACCAACCTTCCATGTTATATGATTTTGGGCCTGGCTGAAGGTGGTGGAAGTGGAAGAGGACGTGGCCCTAAAACCTTAATTCTTTCAAGGGGTCTCACATACCTGATCTTATTGCATCGAAGAACGGATTTTGAGGAGTTCTGTGCAGCTGCACTAAGTGTACATCAGCTTAAGGCACTTGATCGTTCGGAACAACATGCTCAATGTGCATATGAACTTTTCGAGAAGGATGGAAACAGGCCCATTGTCATTGAAGAACTTGCTTCAAAAGTGAAAGAGACAATTGCTCAGCAAGAGAAAAAGCATGATTGTCAACCATATTTACAAACAATTGGCAGTAAAAATGGTAATCCTATGTTTGGGACCGAACATGTGAAGTGGTTTGGAGCTGTACCAGGAGCTGTACATTTGGATGATGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

195

Amino Acids

21.74

Weight (kDa)

8.31

Isoelectric Point (pI)

37.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	62
AcuI	CTGAAG	1 cut(s)	219
AdeI	CACNNNGTG	1 cut(s)	320
AfaI	GTAC	4 cut(s)	125, 324, 555, 567
AfiI	CCNNNNNNNGG	1 cut(s)	521
AflII	CTTAAG	1 cut(s)	332
AflIII	ACRYGT	2 cut(s)	60, 532
AgsI	TTSAA	4 cut(s)	58, 249, 416, 429
AjiI	CACGTC	1 cut(s)	224
AjnI	CCWGG	3 cut(s)	26, 192, 556
AluBI	AGCT	5 cut(s)	54, 311, 331, 551, 563
AluI	AGCT	5 cut(s)	54, 311, 331, 551, 563
Alw26I	GTCTC	2 cut(s)	260, 434
AlwNI	CAGNNNCTG	1 cut(s)	563
AoxI	GGCC	3 cut(s)	190, 226, 401
ApeKI	GCWGC	3 cut(s)	45, 308, 311
AspS9I	GGNCC	4 cut(s)	190, 227, 402, 525
AvaII	GGWCC	1 cut(s)	525
BbvI	GCAGC	3 cut(s)	57, 298, 320
BccI	CCATC	3 cut(s)	124, 164, 386
BciT130I	CCWGG	3 cut(s)	28, 194, 558
BcoDI	GTCTC	2 cut(s)	260, 434
BfrI	CTTAAG	1 cut(s)	332
BisI	GCNGC	3 cut(s)	46, 309, 312
BlpI	GCTNAGC	1 cut(s)	450
BlsI	GCNGC	3 cut(s)	47, 310, 313
Bme1390I	CCNGG	3 cut(s)	28, 194, 558
Bme18I	GGWCC	1 cut(s)	525
BmgBI	CACGTC	1 cut(s)	224
BmgT120I	GGNCC	4 cut(s)	190, 227, 402, 525
BmiI	GGNNCC	1 cut(s)	526
BmrFI	CCNGG	3 cut(s)	28, 194, 558
BmsI	GCATC	4 cut(s)	57, 88, 286, 568
Bpu1102I	GCTNAGC	1 cut(s)	450
BsaAI	YACGTR	1 cut(s)	68
BsaI	GGTCTC	1 cut(s)	260
BsaJI	CCNNGG	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	1 cut(s)	521
BseBI	CCWGG	3 cut(s)	28, 194, 558
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	4 cut(s)	79, 156, 397, 580
BseLI	CCNNNNNNNGG	1 cut(s)	521
BseMII	CTCAG	2 cut(s)	161, 464
BseRI	GAGGAG	1 cut(s)	311
BseXI	GCAGC	3 cut(s)	57, 298, 320
BsgI	GTGCAG	2 cut(s)	297, 327
Bsh1236I	CGCG	1 cut(s)	62
BshFI	GGCC	3 cut(s)	192, 228, 403
BslFI	GGGAC	1 cut(s)	538
BslI	CCNNNNNNNGG	1 cut(s)	521
BsmAI	GTCTC	2 cut(s)	260, 434
BsmFI	GGGAC	1 cut(s)	538
BsnI	GGCC	3 cut(s)	192, 228, 403
Bso31I	GGTCTC	1 cut(s)	260
Bsp1407I	TGTACA	2 cut(s)	322, 565
Bsp143I	GATC	2 cut(s)	267, 343
Bsp1720I	GCTNAGC	1 cut(s)	450
BspANI	GGCC	3 cut(s)	192, 228, 403
BspCNI	CTCAG	2 cut(s)	160, 463
BspFNI	CGCG	1 cut(s)	62
BspLI	GGNNCC	1 cut(s)	526
BspTI	CTTAAG	1 cut(s)	332
BspTNI	GGTCTC	1 cut(s)	260
BsrGI	TGTACA	2 cut(s)	322, 565
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	2 cut(s)	267, 343
Bst2UI	CCWGG	3 cut(s)	28, 194, 558
Bst4CI	ACNGT	1 cut(s)	88
Bst6I	CTCTTC	1 cut(s)	211
BstAFI	CTTAAG	1 cut(s)	332
BstAUI	TGTACA	2 cut(s)	322, 565
BstBAI	YACGTR	1 cut(s)	68
BstDEI	CTNAG	3 cut(s)	147, 317, 450
BstF5I	GGATG	4 cut(s)	79, 156, 397, 580
BstFNI	CGCG	1 cut(s)	62
BstKTI	GATC	2 cut(s)	270, 346
BstMAI	GTCTC	2 cut(s)	260, 434
BstMBI	GATC	2 cut(s)	267, 343
BstMWI	GCNNNNNNNGC	2 cut(s)	51, 368
BstNI	CCWGG	3 cut(s)	28, 194, 558
BstNSI	RCATGY	2 cut(s)	362, 536
BstSCI	CCNGG	3 cut(s)	26, 192, 556
BstUI	CGCG	1 cut(s)	62
BstV1I	GCAGC	3 cut(s)	57, 298, 320
BsuRI	GGCC	3 cut(s)	192, 228, 403
BtgZI	GCGATG	1 cut(s)	102
BtrI	CACGTC	1 cut(s)	224
BtsCI	GGATG	4 cut(s)	79, 156, 397, 580
CaiI	CAGNNNCTG	1 cut(s)	563
Cfr13I	GGNCC	4 cut(s)	190, 227, 402, 525
CseI	GACGC	1 cut(s)	51
Csp6I	GTAC	4 cut(s)	124, 323, 554, 566
CviAII	CATG	4 cut(s)	174, 359, 467, 533
CviQI	GTAC	4 cut(s)	124, 323, 554, 566
DdeI	CTNAG	3 cut(s)	147, 317, 450
DpnI	GATC	2 cut(s)	269, 345
DpnII	GATC	2 cut(s)	267, 343
DraIII	CACNNNGTG	1 cut(s)	320
Eam1104I	CTCTTC	1 cut(s)	211
EarI	CTCTTC	1 cut(s)	211
Eco31I	GGTCTC	1 cut(s)	260
Eco47I	GGWCC	1 cut(s)	525
Eco57I	CTGAAG	1 cut(s)	219
EcoRII	CCWGG	3 cut(s)	26, 192, 556
EcoT22I	ATGCAT	1 cut(s)	583
FaeI	CATG	4 cut(s)	177, 362, 470, 536
FaqI	GGGAC	1 cut(s)	538
FatI	CATG	4 cut(s)	173, 358, 466, 532
FauNDI	CATATG	1 cut(s)	373
Fnu4HI	GCNGC	3 cut(s)	46, 309, 312
FokI	GGATG	3 cut(s)	66, 143, 404
Fsp4HI	GCNGC	3 cut(s)	46, 309, 312
GluI	GCNGC	3 cut(s)	46, 309, 312
HaeIII	GGCC	3 cut(s)	192, 228, 403
HgaI	GACGC	1 cut(s)	51
Hin1II	CATG	4 cut(s)	177, 362, 470, 536
HincII	GTYRAC	1 cut(s)	476
HindII	GTYRAC	1 cut(s)	476
Hpy166II	GTNNAC	2 cut(s)	323, 476
Hpy188I	TCNGA	1 cut(s)	352
Hpy188III	TCNNGA	1 cut(s)	385
Hpy8I	GTNNAC	2 cut(s)	323, 476
HpyAV	CCTTC	3 cut(s)	179, 194, 382
HpyCH4III	ACNGT	1 cut(s)	88
HpyCH4IV	ACGT	2 cut(s)	67, 223
HpyCH4V	TGCA	6 cut(s)	79, 277, 308, 314, 371, 581
HpyF10VI	GCNNNNNNNGC	2 cut(s)	51, 368
HpyF3I	CTNAG	3 cut(s)	147, 317, 450
HpySE526I	ACGT	2 cut(s)	67, 223
Hsp92II	CATG	4 cut(s)	177, 362, 470, 536
Kzo9I	GATC	2 cut(s)	267, 343
LmnI	GCTCC	2 cut(s)	548, 560
LpnPI	CCDG	9 cut(s)	13, 40, 116, 179, 206, 278, 385, 543, 570
Lsp1109I	GCAGC	3 cut(s)	57, 298, 320
LweI	GCATC	4 cut(s)	57, 88, 286, 568
MaeII	ACGT	2 cut(s)	67, 223
MaeIII	GTNAC	1 cut(s)	63
MalI	GATC	2 cut(s)	269, 345
MboI	GATC	2 cut(s)	267, 343
MboII	GAAGA	3 cut(s)	228, 294, 428
MfeI	CAATTG	3 cut(s)	74, 444, 492
MluCI	AATT	5 cut(s)	74, 111, 240, 444, 492
MluI	ACGCGT	1 cut(s)	60
MnlI	CCTC	3 cut(s)	118, 212, 289
Mph1103I	ATGCAT	1 cut(s)	583
MseI	TTAA	2 cut(s)	239, 333
MslI	CAYNNNNRTG	1 cut(s)	573
MspA1I	CMGCKG	1 cut(s)	311
MspCI	CTTAAG	1 cut(s)	332
MspR9I	CCNGG	3 cut(s)	28, 194, 558
MunI	CAATTG	3 cut(s)	74, 444, 492
MvaI	CCWGG	3 cut(s)	28, 194, 558
MvnI	CGCG	1 cut(s)	62
MwoI	GCNNNNNNNGC	2 cut(s)	51, 368
NdeI	CATATG	1 cut(s)	373
NdeII	GATC	2 cut(s)	267, 343
NlaIII	CATG	4 cut(s)	177, 362, 470, 536
NlaIV	GGNNCC	1 cut(s)	526
NmuCI	GTSAC	1 cut(s)	63
NsiI	ATGCAT	1 cut(s)	583
NspI	RCATGY	2 cut(s)	362, 536
PciI	ACATGT	1 cut(s)	532
PkrI	GCNGC	3 cut(s)	47, 310, 313
Ppu21I	YACGTR	1 cut(s)	68
PscI	ACATGT	1 cut(s)	532
Psp6I	CCWGG	3 cut(s)	26, 192, 556
PspGI	CCWGG	3 cut(s)	26, 192, 556
PspN4I	GGNNCC	1 cut(s)	526
PspPI	GGNCC	4 cut(s)	190, 227, 402, 525
PstNI	CAGNNNCTG	1 cut(s)	563
PvuII	CAGCTG	1 cut(s)	311
RsaI	GTAC	4 cut(s)	125, 324, 555, 567
RsaNI	GTAC	4 cut(s)	124, 323, 554, 566
RseI	CAYNNNNRTG	1 cut(s)	573
SaqAI	TTAA	2 cut(s)	239, 333
SatI	GCNGC	3 cut(s)	46, 309, 312
Sau3AI	GATC	2 cut(s)	267, 343
Sau96I	GGNCC	4 cut(s)	190, 227, 402, 525
ScrFI	CCNGG	3 cut(s)	28, 194, 558
SfaNI	GCATC	4 cut(s)	57, 88, 286, 568
SinI	GGWCC	1 cut(s)	525
SmiMI	CAYNNNNRTG	1 cut(s)	573
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
Sse9I	AATT	5 cut(s)	74, 111, 240, 444, 492
StyD4I	CCNGG	3 cut(s)	26, 192, 556
TaaI	ACNGT	1 cut(s)	88
TaiI	ACGT	2 cut(s)	70, 226
TaqI	TCGA	2 cut(s)	280, 384
TaqII	GACCGA	1 cut(s)	542
TasI	AATT	5 cut(s)	74, 111, 240, 444, 492
TatI	WGTACW	3 cut(s)	123, 322, 565
Tru1I	TTAA	2 cut(s)	239, 333
Tru9I	TTAA	2 cut(s)	239, 333
TseFI	GTSAC	1 cut(s)	63
TseI	GCWGC	3 cut(s)	45, 308, 311
Tsp45I	GTSAC	1 cut(s)	63
TspDTI	ATGAA	1 cut(s)	390
TspGWI	ACGGA	1 cut(s)	302
Vha464I	CTTAAG	1 cut(s)	332
VpaK11BI	GGWCC	1 cut(s)	525
XceI	RCATGY	2 cut(s)	362, 536
Zsp2I	ATGCAT	1 cut(s)	583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.