RLG00000015025
TCP Family

1-phosphatidylinositol-3-phosphate 5-kinase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
N/A
Physical Location & Seq
Reverse (-)
60755076 .. 60755497
422 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015025

Sequence Viewer

Length: 324 bp
ATGGAGAAACCTCGATTCATGATTCTTGGTGGTGGTCTTGAGTACCAGCGAGTTTCTAACCTATTGTCAAGTTTTGATACTCTTTTACAGCAGGAGATGGACCATTTAAAGATGGCAGTAGCAAAGATCGAAGCACGCCACCCTGATGTCCTTCTGGTGGAGAAATTAGTTTCTCAATATGCTCAGAAATATCTTCTTGCAAAAGACATATCACTTGTTCTTAATATTAAGAGGCCACTTTTAGAGCGCATAGCTCGCTGCATAGGTGCTCAAAACAGTTCCATCTATCGATCATCTCTCTTCACAAAATTTGGGCTACTGTGA

Protein Analysis

108

Amino Acids

12.22

Weight (kDa)

9.56

Isoelectric Point (pI)

44.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cpn60_TCP1 PF00118 22 - 91 8.5e-09 TCP-1/cpn60 chaperonin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 308
AfaI GTAC 1 cut(s) 44
AfiI CCNNNNNNNGG 1 cut(s) 157
AluBI AGCT 1 cut(s) 254
AluI AGCT 1 cut(s) 254
Alw21I GWGCWC 1 cut(s) 271
AoxI GGCC 1 cut(s) 233
ApeKI GCWGC 1 cut(s) 258
ApoI RAATTY 1 cut(s) 308
AspLEI GCGC 1 cut(s) 249
AspS9I GGNCC 1 cut(s) 100
AvaII GGWCC 1 cut(s) 100
Bbv12I GWGCWC 1 cut(s) 271
BbvI GCAGC 1 cut(s) 245
BccI CCATC 3 cut(s) 91, 106, 290
BisI GCNGC 1 cut(s) 259
BlsI GCNGC 1 cut(s) 260
Bme18I GGWCC 1 cut(s) 100
BmgT120I GGNCC 1 cut(s) 100
BpuEI CTTGAG 1 cut(s) 59
Bsa29I ATCGAT 1 cut(s) 289
Bsc4I CCNNNNNNNGG 1 cut(s) 157
BseCI ATCGAT 1 cut(s) 289
BseLI CCNNNNNNNGG 1 cut(s) 157
BseMII CTCAG 1 cut(s) 197
BseXI GCAGC 1 cut(s) 245
BshFI GGCC 1 cut(s) 235
BshVI ATCGAT 1 cut(s) 289
BsiHKAI GWGCWC 1 cut(s) 271
BslI CCNNNNNNNGG 1 cut(s) 157
BsnI GGCC 1 cut(s) 235
Bsp1286I GDGCHC 1 cut(s) 271
Bsp143I GATC 2 cut(s) 126, 290
BspANI GGCC 1 cut(s) 235
BspCNI CTCAG 1 cut(s) 196
BspDI ATCGAT 1 cut(s) 289
BspHI TCATGA 1 cut(s) 18
BssMI GATC 2 cut(s) 126, 290
Bst4CI ACNGT 2 cut(s) 278, 321
Bst6I CTCTTC 1 cut(s) 305
BstC8I GCNNGC 2 cut(s) 136, 256
BstDEI CTNAG 1 cut(s) 183
BstHHI GCGC 1 cut(s) 249
BstKTI GATC 2 cut(s) 129, 293
BstMBI GATC 2 cut(s) 126, 290
BstMWI GCNNNNNNNGC 1 cut(s) 255
BstV1I GCAGC 1 cut(s) 245
Bsu15I ATCGAT 1 cut(s) 289
BsuRI GGCC 1 cut(s) 235
BsuTUI ATCGAT 1 cut(s) 289
Cac8I GCNNGC 2 cut(s) 136, 256
CciI TCATGA 1 cut(s) 18
CfoI GCGC 1 cut(s) 249
Cfr13I GGNCC 1 cut(s) 100
ClaI ATCGAT 1 cut(s) 289
Csp6I GTAC 1 cut(s) 43
CviAII CATG 1 cut(s) 19
CviJI RGCY 3 cut(s) 235, 254, 316
CviKI_1 RGCY 3 cut(s) 235, 254, 316
CviQI GTAC 1 cut(s) 43
DdeI CTNAG 1 cut(s) 183
DpnI GATC 2 cut(s) 128, 292
DpnII GATC 2 cut(s) 126, 290
DraI TTTAAA 1 cut(s) 108
Eam1104I CTCTTC 1 cut(s) 305
EarI CTCTTC 1 cut(s) 305
Eco47I GGWCC 1 cut(s) 100
FaeI CATG 1 cut(s) 22
FaiI YATR 5 cut(s) 20, 180, 209, 251, 263
FatI CATG 1 cut(s) 18
Fnu4HI GCNGC 1 cut(s) 259
Fsp4HI GCNGC 1 cut(s) 259
GlaI GCGC 1 cut(s) 248
GluI GCNGC 1 cut(s) 259
HaeIII GGCC 1 cut(s) 235
HhaI GCGC 1 cut(s) 249
Hin1II CATG 1 cut(s) 22
Hin6I GCGC 1 cut(s) 247
HinP1I GCGC 1 cut(s) 247
HinfI GANTC 2 cut(s) 15, 22
Hpy188I TCNGA 1 cut(s) 186
Hpy188III TCNNGA 2 cut(s) 19, 38
HpyAV CCTTC 1 cut(s) 161
HpyCH4III ACNGT 2 cut(s) 278, 321
HpyCH4V TGCA 2 cut(s) 200, 261
HpyF10VI GCNNNNNNNGC 1 cut(s) 255
HpyF3I CTNAG 1 cut(s) 183
Hsp92II CATG 1 cut(s) 22
HspAI GCGC 1 cut(s) 247
Kzo9I GATC 2 cut(s) 126, 290
LpnPI CCDG 4 cut(s) 59, 77, 140, 156
Lsp1109I GCAGC 1 cut(s) 245
MalI GATC 2 cut(s) 128, 292
MboI GATC 2 cut(s) 126, 290
MboII GAAGA 2 cut(s) 185, 292
MhlI GDGCHC 1 cut(s) 271
MluCI AATT 2 cut(s) 164, 308
MnlI CCTC 2 cut(s) 21, 225
MseI TTAA 3 cut(s) 107, 222, 228
MslI CAYNNNNRTG 1 cut(s) 144
MwoI GCNNNNNNNGC 1 cut(s) 255
NdeII GATC 2 cut(s) 126, 290
NlaIII CATG 1 cut(s) 22
PagI TCATGA 1 cut(s) 18
PfeI GAWTC 2 cut(s) 15, 22
PkrI GCNGC 1 cut(s) 260
PspPI GGNCC 1 cut(s) 100
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
RseI CAYNNNNRTG 1 cut(s) 144
SaqAI TTAA 3 cut(s) 107, 222, 228
SatI GCNGC 1 cut(s) 259
Sau3AI GATC 2 cut(s) 126, 290
Sau96I GGNCC 1 cut(s) 100
SduI GDGCHC 1 cut(s) 271
SetI ASST 4 cut(s) 13, 63, 256, 268
SinI GGWCC 1 cut(s) 100
SmiMI CAYNNNNRTG 1 cut(s) 144
SmlI CTYRAG 1 cut(s) 38
SmoI CTYRAG 1 cut(s) 38
Sse9I AATT 2 cut(s) 164, 308
SspI AATATT 1 cut(s) 226
TaaI ACNGT 2 cut(s) 278, 321
TaqI TCGA 3 cut(s) 13, 129, 289
TasI AATT 2 cut(s) 164, 308
TfiI GAWTC 2 cut(s) 15, 22
Tru1I TTAA 3 cut(s) 107, 222, 228
Tru9I TTAA 3 cut(s) 107, 222, 228
TseI GCWGC 1 cut(s) 258
TspDTI ATGAA 1 cut(s) 7
VpaK11BI GGWCC 1 cut(s) 100
XapI RAATTY 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.