RLG00000015463

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
N/A
Physical Location & Seq
Reverse (-)
66422033 .. 66423430
1398 bp
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UTR
Exon/CDS
Intron
RLM00000015463

Sequence Viewer

Length: 405 bp
ATGGGACTAACGACATTGCCACAAGGGTACTTATTTGAGACTGTTCCAGAGCAACTTAAGGAGTCCATACAAGGAGCTGTGGATTATTATCAAAAGGCAGAACGTTTCAAGATGATAAGAGGTGATGCCAAATCTGCAGTGCTTGCACCTGATGAAGGGGAATCTCTTGGAGTTAATGCAATGTTTTCAGCTCCTTCTGCTCTTCAAAAGCTGTATTTGACTGTCAAGCAGGAAAGGTCCATACGAGATGGAGAAAGTTTGACATTCGAAGATTGTATCCAGTTCATGGAAAGAGCAAGTGTAAAGCTGGAAAGACTAATAGTATTTTCTTTTCTTTTCTTGTGTGGAGATTTGGACTATGGATTCTTTTATGTTTGTATATTGTCCACATTACAAGCTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

135

Amino Acids

15.14

Weight (kDa)

4.74

Isoelectric Point (pI)

36.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 286
AclI AACGTT 1 cut(s) 103
AfaI GTAC 1 cut(s) 29
AfiI CCNNNNNNNGG 2 cut(s) 155, 286
AflII CTTAAG 1 cut(s) 56
AgsI TTSAA 2 cut(s) 109, 206
AluBI AGCT 5 cut(s) 77, 191, 211, 307, 398
AluI AGCT 5 cut(s) 77, 191, 211, 307, 398
Alw26I GTCTC 1 cut(s) 32
AspS9I GGNCC 1 cut(s) 237
AsuHPI GGTGA 1 cut(s) 134
AsuII TTCGAA 1 cut(s) 267
AvaII GGWCC 1 cut(s) 237
BccI CCATC 1 cut(s) 242
BciVI GTATCC 1 cut(s) 287
BcoDI GTCTC 1 cut(s) 32
BfmI CTRYAG 1 cut(s) 135
BfrI CTTAAG 1 cut(s) 56
BfuI GTATCC 1 cut(s) 287
Bme18I GGWCC 1 cut(s) 237
BmgT120I GGNCC 1 cut(s) 237
BmsI GCATC 1 cut(s) 115
Bpu14I TTCGAA 1 cut(s) 267
BsaBI GATNNNNATC 1 cut(s) 87
Bsc4I CCNNNNNNNGG 2 cut(s) 155, 286
Bse1I ACTGG 1 cut(s) 280
Bse3DI GCAATG 2 cut(s) 14, 186
Bse8I GATNNNNATC 1 cut(s) 87
BseJI GATNNNNATC 1 cut(s) 87
BseLI CCNNNNNNNGG 2 cut(s) 155, 286
BseMI GCAATG 2 cut(s) 14, 186
BseNI ACTGG 1 cut(s) 280
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 2 cut(s) 155, 286
BsmAI GTCTC 1 cut(s) 32
BsmFI GGGAC 1 cut(s) 18
Bsp119I TTCGAA 1 cut(s) 267
BspMAI CTGCAG 1 cut(s) 139
BspQI GCTCTTC 1 cut(s) 207
BspT104I TTCGAA 1 cut(s) 267
BspTI CTTAAG 1 cut(s) 56
BsrDI GCAATG 2 cut(s) 14, 186
BsrI ACTGG 1 cut(s) 280
Bst4CI ACNGT 2 cut(s) 43, 223
Bst6I CTCTTC 1 cut(s) 207
BstAFI CTTAAG 1 cut(s) 56
BstAPI GCANNNNNTGC 1 cut(s) 143
BstBI TTCGAA 1 cut(s) 267
BstC8I GCNNGC 1 cut(s) 144
BstENI CCTNNNNNAGG 1 cut(s) 153
BstMAI GTCTC 1 cut(s) 32
BstMWI GCNNNNNNNGC 3 cut(s) 134, 143, 197
BstSFI CTRYAG 1 cut(s) 135
BsuI GTATCC 1 cut(s) 287
BtsI GCAGTG 1 cut(s) 144
BtsIMutI CAGTG 1 cut(s) 144
Cac8I GCNNGC 1 cut(s) 144
Cfr13I GGNCC 1 cut(s) 237
Csp6I GTAC 1 cut(s) 28
CviAII CATG 1 cut(s) 286
CviJI RGCY 5 cut(s) 77, 191, 211, 307, 398
CviKI_1 RGCY 5 cut(s) 77, 191, 211, 307, 398
CviQI GTAC 1 cut(s) 28
Eam1104I CTCTTC 1 cut(s) 207
EarI CTCTTC 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 237
EcoNI CCTNNNNNAGG 1 cut(s) 153
FaeI CATG 1 cut(s) 289
FaiI YATR 6 cut(s) 68, 242, 287, 360, 372, 380
FaqI GGGAC 1 cut(s) 18
FatI CATG 1 cut(s) 285
Hin1II CATG 1 cut(s) 289
HindIII AAGCTT 1 cut(s) 396
HinfI GANTC 3 cut(s) 62, 161, 363
HphI GGTGA 1 cut(s) 134
Hpy166II GTNNAC 1 cut(s) 387
Hpy188III TCNNGA 2 cut(s) 47, 109
Hpy8I GTNNAC 1 cut(s) 387
HpyAV CCTTC 2 cut(s) 149, 204
HpyCH4III ACNGT 2 cut(s) 43, 223
HpyCH4IV ACGT 1 cut(s) 103
HpyCH4V TGCA 3 cut(s) 137, 146, 179
HpyF10VI GCNNNNNNNGC 3 cut(s) 134, 143, 197
HpySE526I ACGT 1 cut(s) 103
Hsp92II CATG 1 cut(s) 289
LguI GCTCTTC 1 cut(s) 207
LmnI GCTCC 2 cut(s) 74, 196
LpnPI CCDG 5 cut(s) 60, 162, 215, 293, 293
LweI GCATC 1 cut(s) 115
MaeII ACGT 1 cut(s) 103
MboII GAAGA 2 cut(s) 194, 281
MlyI GAGTC 1 cut(s) 71
MnlI CCTC 1 cut(s) 113
MseI TTAA 3 cut(s) 57, 174, 403
MspCI CTTAAG 1 cut(s) 56
MwoI GCNNNNNNNGC 3 cut(s) 134, 143, 197
NlaIII CATG 1 cut(s) 289
NspV TTCGAA 1 cut(s) 267
PciSI GCTCTTC 1 cut(s) 207
PfeI GAWTC 2 cut(s) 161, 363
PflMI CCANNNNNTGG 1 cut(s) 286
PleI GAGTC 1 cut(s) 70
PpsI GAGTC 1 cut(s) 70
Psp1406I AACGTT 1 cut(s) 103
PspPI GGNCC 1 cut(s) 237
PstI CTGCAG 1 cut(s) 139
RsaI GTAC 1 cut(s) 29
RsaNI GTAC 1 cut(s) 28
SapI GCTCTTC 1 cut(s) 207
SaqAI TTAA 3 cut(s) 57, 174, 403
Sau96I GGNCC 1 cut(s) 237
SchI GAGTC 1 cut(s) 71
SetI ASST 9 cut(s) 79, 106, 124, 151, 193, 213, 239, 309, 400
SfaNI GCATC 1 cut(s) 115
SfcI CTRYAG 1 cut(s) 135
SfuI TTCGAA 1 cut(s) 267
SinI GGWCC 1 cut(s) 237
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
TaaI ACNGT 2 cut(s) 43, 223
TaiI ACGT 1 cut(s) 106
TaqI TCGA 1 cut(s) 267
TfiI GAWTC 2 cut(s) 161, 363
Tru1I TTAA 3 cut(s) 57, 174, 403
Tru9I TTAA 3 cut(s) 57, 174, 403
TscAI CASTG 1 cut(s) 144
TspDTI ATGAA 2 cut(s) 168, 274
TspRI CASTG 1 cut(s) 144
Van91I CCANNNNNTGG 1 cut(s) 286
Vha464I CTTAAG 1 cut(s) 56
VpaK11BI GGWCC 1 cut(s) 237
XagI CCTNNNNNAGG 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.