RLG00000015508

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
N/A
Physical Location & Seq
Reverse (-)
67117100 .. 67117519
420 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015508

Sequence Viewer

Length: 339 bp
ATGGGCATATCTGAGCCAGAGCTCATCAAAGAAATTGTTGAAAAGGTACGAGACAAAGTACGTCCTGTATTGTTGGAGCCTGCAGAAAAGCTAGTTGGAATTGAGTCAAGATTAGAGCAACTAGATTCCCTTTTGGATACAGTGTCAAACAATGTTCGCCTTATAGGGATATGCGGCTTGGGGGGGATAGGTAAGACAACCCTTGCTGAAACAGCCTATAGGAGGATCTGTACTGAATTTGAAGCTAGTAGCTTTCTTGAGAGAGTTAGAGTTGATAATCTAGCCAATCTAAAAAGAAAACTTTGCATGAACCTCATGAATAGAGATATAAGAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 NB-ARC TIR

Protein Analysis

113

Amino Acids

12.64

Weight (kDa)

6.35

Isoelectric Point (pI)

37.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 36 - 106 5.3e-06 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 174
AclWI GGATC 1 cut(s) 233
AcsI RAATTY 1 cut(s) 236
AfaI GTAC 3 cut(s) 48, 60, 232
AfiI CCNNNNNNNGG 1 cut(s) 222
AgsI TTSAA 2 cut(s) 41, 242
AjuI GAANNNNNNNTTGG 2 cut(s) 78, 110
AluBI AGCT 4 cut(s) 22, 91, 245, 252
AluI AGCT 4 cut(s) 22, 91, 245, 252
Alw21I GWGCWC 1 cut(s) 24
Alw26I GTCTC 2 cut(s) 45, 327
AlwI GGATC 1 cut(s) 233
ApoI RAATTY 1 cut(s) 236
BanII GRGCYC 1 cut(s) 24
Bbv12I GWGCWC 1 cut(s) 24
BciVI GTATCC 1 cut(s) 130
BcoDI GTCTC 2 cut(s) 45, 327
BfaI CTAG 5 cut(s) 92, 122, 246, 281, 337
BfmI CTRYAG 2 cut(s) 81, 217
BfuI GTATCC 1 cut(s) 130
BisI GCNGC 1 cut(s) 175
BlsI GCNGC 1 cut(s) 176
BmiI GGNNCC 1 cut(s) 78
BpuEI CTTGAG 1 cut(s) 278
BsaXI ACNNNNNCTCC 2 cut(s) 214, 244
Bsc4I CCNNNNNNNGG 1 cut(s) 222
BseLI CCNNNNNNNGG 1 cut(s) 222
BsiHKAI GWGCWC 1 cut(s) 24
BslI CCNNNNNNNGG 1 cut(s) 222
BsmAI GTCTC 2 cut(s) 45, 327
Bsp1286I GDGCHC 1 cut(s) 24
Bsp143I GATC 1 cut(s) 225
BspACI CCGC 1 cut(s) 174
BspCNI CTCAG 1 cut(s) 4
BspHI TCATGA 1 cut(s) 315
BspLI GGNNCC 1 cut(s) 78
BspMAI CTGCAG 1 cut(s) 85
BspPI GGATC 1 cut(s) 233
BssMI GATC 1 cut(s) 225
Bst4CI ACNGT 1 cut(s) 142
BstC8I GCNNGC 1 cut(s) 81
BstDEI CTNAG 1 cut(s) 12
BstENI CCTNNNNNAGG 1 cut(s) 220
BstKTI GATC 1 cut(s) 228
BstMAI GTCTC 2 cut(s) 45, 327
BstMBI GATC 1 cut(s) 225
BstMWI GCNNNNNNNGC 1 cut(s) 212
BstSFI CTRYAG 2 cut(s) 81, 217
BstX2I RGATCY 1 cut(s) 225
BstYI RGATCY 1 cut(s) 225
BsuI GTATCC 1 cut(s) 130
BtsIMutI CAGTG 1 cut(s) 147
Cac8I GCNNGC 1 cut(s) 81
CciI TCATGA 1 cut(s) 315
Csp6I GTAC 3 cut(s) 47, 59, 231
CviAII CATG 2 cut(s) 307, 316
CviJI RGCY 9 cut(s) 16, 22, 79, 91, 177, 215, 245, 252, 284
CviKI_1 RGCY 9 cut(s) 16, 22, 79, 91, 177, 215, 245, 252, 284
CviQI GTAC 3 cut(s) 47, 59, 231
DdeI CTNAG 1 cut(s) 12
DpnI GATC 1 cut(s) 227
DpnII GATC 1 cut(s) 225
Ecl136II GAGCTC 1 cut(s) 22
Eco24I GRGCYC 1 cut(s) 24
Eco53kI GAGCTC 1 cut(s) 22
EcoICRI GAGCTC 1 cut(s) 22
EcoNI CCTNNNNNAGG 1 cut(s) 220
EcoT38I GRGCYC 1 cut(s) 24
FaeI CATG 2 cut(s) 310, 319
FaiI YATR 7 cut(s) 8, 164, 172, 219, 308, 317, 329
FatI CATG 2 cut(s) 306, 315
Fnu4HI GCNGC 1 cut(s) 175
FriOI GRGCYC 1 cut(s) 24
Fsp4HI GCNGC 1 cut(s) 175
FspBI CTAG 5 cut(s) 92, 122, 246, 281, 337
GluI GCNGC 1 cut(s) 175
Hin1II CATG 2 cut(s) 310, 319
HinfI GANTC 2 cut(s) 104, 125
Hpy188I TCNGA 1 cut(s) 13
Hpy188III TCNNGA 3 cut(s) 108, 257, 316
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4IV ACGT 1 cut(s) 61
HpyCH4V TGCA 2 cut(s) 83, 306
HpyF10VI GCNNNNNNNGC 1 cut(s) 212
HpyF3I CTNAG 1 cut(s) 12
HpySE526I ACGT 1 cut(s) 61
Hsp92II CATG 2 cut(s) 310, 319
Kzo9I GATC 1 cut(s) 225
LmnI GCTCC 1 cut(s) 76
LpnPI CCDG 3 cut(s) 30, 78, 93
MaeI CTAG 5 cut(s) 92, 122, 246, 281, 337
MaeII ACGT 1 cut(s) 61
MalI GATC 1 cut(s) 227
MboI GATC 1 cut(s) 225
MflI RGATCY 1 cut(s) 225
MhlI GDGCHC 1 cut(s) 24
MluCI AATT 3 cut(s) 33, 99, 236
MlyI GAGTC 1 cut(s) 113
MmeI TCCRAC 2 cut(s) 54, 76
MnlI CCTC 2 cut(s) 216, 323
MwoI GCNNNNNNNGC 1 cut(s) 212
NdeII GATC 1 cut(s) 225
NlaIII CATG 2 cut(s) 310, 319
NlaIV GGNNCC 1 cut(s) 78
PagI TCATGA 1 cut(s) 315
PfeI GAWTC 1 cut(s) 125
PkrI GCNGC 1 cut(s) 176
PleI GAGTC 1 cut(s) 112
PpsI GAGTC 1 cut(s) 112
Psp124BI GAGCTC 1 cut(s) 24
PspN4I GGNNCC 1 cut(s) 78
PstI CTGCAG 1 cut(s) 85
PsuI RGATCY 1 cut(s) 225
RsaI GTAC 3 cut(s) 48, 60, 232
RsaNI GTAC 3 cut(s) 47, 59, 231
SacI GAGCTC 1 cut(s) 24
SatI GCNGC 1 cut(s) 175
Sau3AI GATC 1 cut(s) 225
SchI GAGTC 1 cut(s) 113
SduI GDGCHC 1 cut(s) 24
SetI ASST 8 cut(s) 24, 48, 64, 93, 193, 247, 254, 315
SfcI CTRYAG 2 cut(s) 81, 217
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
Sse9I AATT 3 cut(s) 33, 99, 236
SsiI CCGC 1 cut(s) 174
SspMI CTAG 5 cut(s) 92, 122, 246, 281, 337
SstI GAGCTC 1 cut(s) 24
TaaI ACNGT 1 cut(s) 142
TaiI ACGT 1 cut(s) 64
TasI AATT 3 cut(s) 33, 99, 236
TatI WGTACW 1 cut(s) 230
TauI GCSGC 1 cut(s) 177
TfiI GAWTC 1 cut(s) 125
TscAI CASTG 1 cut(s) 147
TspDTI ATGAA 2 cut(s) 323, 332
TspRI CASTG 1 cut(s) 147
XagI CCTNNNNNAGG 1 cut(s) 220
XapI RAATTY 1 cut(s) 236
XspI CTAG 5 cut(s) 92, 122, 246, 281, 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.