Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

25491698 .. 25492973

Gene Structure 1276 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018118

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGCTATGGCTTTTACAATTCCTCCTATGCCAAAAACTCATCCAACGAAGTTTATGCAACCGGACTTTGTAGAAGAGATTTCCTGGAGGATGCTTGTCGTAGCTGCCTCAATGAGTCGAGCCACAAGCTCACAGAACTTTGTCCTAACCAAAAAGAAGCTCTCGTCTTTTATGACACTTGCATGTTACGCTTCTCAAACCGATCCCTCTATGGCCTCATGGAGGATCCCCCTGCTTTCTATCTCTAAACAACACAACTACTTCAAATTTCAAGACAATATATGCACAAATGTAGTGCACGCCAGAATGCAAGATTTGTCCGAGCAAGATTGCACTGATTGCTTGATTGGTGCTTATGGAAACATCACAACTTACAGTTACGGGAAGGATGGGGCCAGAATTCTTAAACCAAGTTGTAACATTAGGTTGTTTGTGCTTGATGAAACACAAGGCAATGCTAATCGTATTGTGGGAACCTACGGATATATGCCTCCAGAATATGTGAAGCATGGACATTTTTCTGTTAAGTCTGATGTCTATAGTTTTAGTGTGTTGATTTTGGAGATAATAAGTGGACAGAAAAATAGTTGCTTCGATCATGGAGAGAATGTGGAGACTATTCCAAGCTATGCATGGAAAAGTTGGAGGGAAGGGAAACCTTCAAATGTGATAGATCCCAGATTGAAGAATGGTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

233

Amino Acids

26.18

Weight (kDa)

8.67

Isoelectric Point (pI)

43.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	151 - 197	4.1e-07	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	159 - 195	1.4e-07	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	197, 220, 233, 668
AcsI	RAATTY	2 cut(s)	266, 399
AfiI	CCNNNNNNNGG	1 cut(s)	222
AgsI	TTSAA	4 cut(s)	265, 272, 663, 685
AjnI	CCWGG	1 cut(s)	83
AluBI	AGCT	4 cut(s)	104, 129, 160, 627
AluI	AGCT	4 cut(s)	104, 129, 160, 627
Alw21I	GWGCWC	1 cut(s)	300
Alw26I	GTCTC	1 cut(s)	608
Alw44I	GTGCAC	1 cut(s)	296
AlwI	GGATC	4 cut(s)	197, 220, 233, 668
AoxI	GGCC	2 cut(s)	213, 393
ApaLI	GTGCAC	1 cut(s)	296
ApeKI	GCWGC	1 cut(s)	104
ApoI	RAATTY	2 cut(s)	266, 399
AspS9I	GGNCC	1 cut(s)	393
BaeGI	GKGCMC	1 cut(s)	300
BamHI	GGATCC	1 cut(s)	225
Bbv12I	GWGCWC	1 cut(s)	300
BbvI	GCAGC	1 cut(s)	91
BccI	CCATC	1 cut(s)	383
BcgI	CGANNNNNNTGC	2 cut(s)	37, 71
BciT130I	CCWGG	1 cut(s)	85
BcoDI	GTCTC	1 cut(s)	608
BfmI	CTRYAG	1 cut(s)	538
BisI	GCNGC	1 cut(s)	105
BlsI	GCNGC	1 cut(s)	106
Bme1390I	CCNGG	1 cut(s)	85
BmgT120I	GGNCC	1 cut(s)	393
BmiI	GGNNCC	3 cut(s)	227, 394, 475
BmrFI	CCNGG	1 cut(s)	85
BmsI	GCATC	1 cut(s)	81
BpmI	CTGGAG	2 cut(s)	106, 477
BsaWI	WCCGGW	1 cut(s)	61
BsaXI	ACNNNNNCTCC	4 cut(s)	7, 37, 594, 624
Bsc4I	CCNNNNNNNGG	1 cut(s)	222
Bse3DI	GCAATG	1 cut(s)	460
BseBI	CCWGG	1 cut(s)	85
BseGI	GGATG	3 cut(s)	40, 96, 394
BseLI	CCNNNNNNNGG	1 cut(s)	222
BseMI	GCAATG	1 cut(s)	460
BseSI	GKGCMC	1 cut(s)	300
BseXI	GCAGC	1 cut(s)	91
BshFI	GGCC	2 cut(s)	215, 395
BsiHKAI	GWGCWC	1 cut(s)	300
BsiSI	CCGG	1 cut(s)	62
BslI	CCNNNNNNNGG	1 cut(s)	222
BsmAI	GTCTC	1 cut(s)	608
BsmI	GAATGC	1 cut(s)	312
BsnI	GGCC	2 cut(s)	215, 395
Bsp1286I	GDGCHC	1 cut(s)	300
Bsp143I	GATC	4 cut(s)	202, 225, 595, 673
BspANI	GGCC	2 cut(s)	215, 395
BspHI	TCATGA	1 cut(s)	695
BspLI	GGNNCC	3 cut(s)	227, 394, 475
BspPI	GGATC	4 cut(s)	197, 220, 233, 668
BsrDI	GCAATG	1 cut(s)	460
BssMI	GATC	4 cut(s)	202, 225, 595, 673
Bst2UI	CCWGG	1 cut(s)	85
Bst4CI	ACNGT	1 cut(s)	377
Bst6I	CTCTTC	1 cut(s)	69
BstAPI	GCANNNNNTGC	1 cut(s)	339
BstC8I	GCNNGC	1 cut(s)	300
BstENI	CCTNNNNNAGG	1 cut(s)	220
BstF5I	GGATG	3 cut(s)	40, 96, 394
BstKTI	GATC	4 cut(s)	205, 228, 598, 676
BstMAI	GTCTC	1 cut(s)	608
BstMBI	GATC	4 cut(s)	202, 225, 595, 673
BstMWI	GCNNNNNNNGC	2 cut(s)	188, 339
BstNI	CCWGG	1 cut(s)	85
BstNSI	RCATGY	1 cut(s)	186
BstSCI	CCNGG	1 cut(s)	83
BstSFI	CTRYAG	1 cut(s)	538
BstSLI	GKGCMC	1 cut(s)	300
BstV1I	GCAGC	1 cut(s)	91
BstX2I	RGATCY	2 cut(s)	225, 673
BstYI	RGATCY	2 cut(s)	225, 673
BsuRI	GGCC	2 cut(s)	215, 395
BtsCI	GGATG	3 cut(s)	40, 96, 394
BtsIMutI	CAGTG	1 cut(s)	333
Cac8I	GCNNGC	1 cut(s)	300
CciI	TCATGA	1 cut(s)	695
Cfr13I	GGNCC	1 cut(s)	393
CviAII	CATG	6 cut(s)	183, 219, 509, 599, 633, 696
CviJI	RGCY	9 cut(s)	5, 11, 104, 122, 129, 160, 215, 395, 627
CviKI_1	RGCY	9 cut(s)	5, 11, 104, 122, 129, 160, 215, 395, 627
DpnI	GATC	4 cut(s)	204, 227, 597, 675
DpnII	GATC	4 cut(s)	202, 225, 595, 673
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
EcoNI	CCTNNNNNAGG	1 cut(s)	220
EcoRI	GAATTC	1 cut(s)	399
EcoRII	CCWGG	1 cut(s)	83
EcoT22I	ATGCAT	1 cut(s)	634
FaeI	CATG	6 cut(s)	186, 222, 512, 602, 636, 699
FatI	CATG	6 cut(s)	182, 218, 508, 598, 632, 695
Fnu4HI	GCNGC	1 cut(s)	105
FokI	GGATG	3 cut(s)	27, 103, 401
Fsp4HI	GCNGC	1 cut(s)	105
GluI	GCNGC	1 cut(s)	105
GsuI	CTGGAG	2 cut(s)	106, 477
HaeIII	GGCC	2 cut(s)	215, 395
HapII	CCGG	1 cut(s)	62
Hin1II	CATG	6 cut(s)	186, 222, 512, 602, 636, 699
HinfI	GANTC	1 cut(s)	115
HpaII	CCGG	1 cut(s)	62
Hpy166II	GTNNAC	2 cut(s)	298, 575
Hpy188I	TCNGA	2 cut(s)	322, 532
Hpy188III	TCNNGA	3 cut(s)	272, 494, 696
Hpy8I	GTNNAC	2 cut(s)	298, 575
HpyAV	CCTTC	3 cut(s)	379, 644, 669
HpyCH4III	ACNGT	1 cut(s)	377
HpyCH4V	TGCA	7 cut(s)	58, 182, 285, 298, 310, 333, 632
HpyF10VI	GCNNNNNNNGC	2 cut(s)	188, 339
Hsp92II	CATG	6 cut(s)	186, 222, 512, 602, 636, 699
Kzo9I	GATC	4 cut(s)	202, 225, 595, 673
LpnPI	CCDG	8 cut(s)	70, 75, 97, 245, 316, 409, 507, 691
Lsp1109I	GCAGC	1 cut(s)	91
LweI	GCATC	1 cut(s)	81
MaeIII	GTNAC	3 cut(s)	185, 377, 416
MalI	GATC	4 cut(s)	204, 227, 597, 675
MboI	GATC	4 cut(s)	202, 225, 595, 673
MboII	GAAGA	2 cut(s)	86, 697
MflI	RGATCY	2 cut(s)	225, 673
MhlI	GDGCHC	1 cut(s)	300
MluCI	AATT	3 cut(s)	18, 266, 399
MlyI	GAGTC	1 cut(s)	124
MmeI	TCCRAC	2 cut(s)	68, 623
MnlI	CCTC	8 cut(s)	33, 81, 118, 216, 217, 226, 501, 639
Mph1103I	ATGCAT	1 cut(s)	634
MseI	TTAA	2 cut(s)	405, 525
MslI	CAYNNNNRTG	1 cut(s)	181
MspI	CCGG	1 cut(s)	62
MspR9I	CCNGG	1 cut(s)	85
Mva1269I	GAATGC	1 cut(s)	312
MvaI	CCWGG	1 cut(s)	85
MwoI	GCNNNNNNNGC	2 cut(s)	188, 339
NdeII	GATC	4 cut(s)	202, 225, 595, 673
NlaIII	CATG	6 cut(s)	186, 222, 512, 602, 636, 699
NlaIV	GGNNCC	3 cut(s)	227, 394, 475
NsiI	ATGCAT	1 cut(s)	634
NspI	RCATGY	1 cut(s)	186
PagI	TCATGA	1 cut(s)	695
PctI	GAATGC	1 cut(s)	312
PfoI	TCCNGGA	1 cut(s)	83
PkrI	GCNGC	1 cut(s)	106
PleI	GAGTC	1 cut(s)	123
PpsI	GAGTC	1 cut(s)	123
Psp6I	CCWGG	1 cut(s)	83
PspGI	CCWGG	1 cut(s)	83
PspN4I	GGNNCC	3 cut(s)	227, 394, 475
PspPI	GGNCC	1 cut(s)	393
PsuI	RGATCY	2 cut(s)	225, 673
RseI	CAYNNNNRTG	1 cut(s)	181
SaqAI	TTAA	2 cut(s)	405, 525
SatI	GCNGC	1 cut(s)	105
Sau3AI	GATC	4 cut(s)	202, 225, 595, 673
Sau96I	GGNCC	1 cut(s)	393
SchI	GAGTC	1 cut(s)	124
ScrFI	CCNGG	1 cut(s)	85
SduI	GDGCHC	1 cut(s)	300
SetI	ASST	7 cut(s)	106, 131, 162, 428, 479, 629, 661
SfaNI	GCATC	1 cut(s)	81
SfcI	CTRYAG	1 cut(s)	538
SmiMI	CAYNNNNRTG	1 cut(s)	181
Sse9I	AATT	3 cut(s)	18, 266, 399
StyD4I	CCNGG	1 cut(s)	83
TaaI	ACNGT	1 cut(s)	377
TaqI	TCGA	2 cut(s)	118, 594
TasI	AATT	3 cut(s)	18, 266, 399
Tru1I	TTAA	2 cut(s)	405, 525
Tru9I	TTAA	2 cut(s)	405, 525
TscAI	CASTG	1 cut(s)	340
TseI	GCWGC	1 cut(s)	104
TspDTI	ATGAA	2 cut(s)	456, 684
TspGWI	ACGGA	1 cut(s)	495
TspRI	CASTG	1 cut(s)	340
VneI	GTGCAC	1 cut(s)	296
XagI	CCTNNNNNAGG	1 cut(s)	220
XapI	RAATTY	2 cut(s)	266, 399
XceI	RCATGY	1 cut(s)	186
XcmI	CCANNNNNNNNNTGG	1 cut(s)	630
Zsp2I	ATGCAT	1 cut(s)	634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.