Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

30942863 .. 30945759

Gene Structure 2897 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018507

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGAAAAGGACATCTCTGGATTGGACAAGACGCTTGGAGATTATCTTTGGCATTGCTAGAGGGATCTTGTATCGTCATCAAGATTCAAGATTAAGAATCATCCACAGAGACCTAAAGGCCAACAATATTCTACTGGATTATGATAAGAACCTCAAAATTGCAGATTTTGGTGTGGCTAGAATATTCGGAGCAAACCAAATTGAAGCAAATACAAGTCGCGTGGTTGGAACATGTGGTTACATACCACAGGAGTATGCAATGGAAGAACTATTTTTAGTGAAGTCTGATGTCTACAGTTTCAGTGTTTTGCTGCTAGAAATCGTAACTGGCAGAAAGAACACTAGTTACTACTATGATAATCCTGACTCAAATTTGGTTGGACATGTTTGGGACTTATGGAAAGAAGTCGAGCCTTGGAAATCATCGATACATCTTTGGGTGAATCCTACCCATAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

153

Amino Acids

17.8

Weight (kDa)

8.65

Isoelectric Point (pI)

39.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	3 - 113	4.2e-21	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	13 - 113	6.9e-21	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	291
AccII	CGCG	1 cut(s)	219
AclWI	GGATC	1 cut(s)	71
AcsI	RAATTY	1 cut(s)	370
AflIII	ACRYGT	2 cut(s)	230, 382
AgsI	TTSAA	2 cut(s)	87, 203
AhlI	ACTAGT	1 cut(s)	341
Alw26I	GTCTC	1 cut(s)	102
AlwI	GGATC	1 cut(s)	71
AoxI	GGCC	1 cut(s)	117
ApeKI	GCWGC	1 cut(s)	310
ApoI	RAATTY	1 cut(s)	370
AsuHPI	GGTGA	1 cut(s)	451
BbvI	GCAGC	1 cut(s)	297
BcoDI	GTCTC	1 cut(s)	102
BcuI	ACTAGT	1 cut(s)	341
BfaI	CTAG	4 cut(s)	57, 177, 314, 342
BfmI	CTRYAG	1 cut(s)	292
BisI	GCNGC	1 cut(s)	311
BlsI	GCNGC	1 cut(s)	312
Bsa29I	ATCGAT	1 cut(s)	425
BsaI	GGTCTC	1 cut(s)	102
BsaJI	CCNNGG	1 cut(s)	413
Bse1I	ACTGG	2 cut(s)	138, 331
Bse3DI	GCAATG	2 cut(s)	51, 264
BseCI	ATCGAT	1 cut(s)	425
BseDI	CCNNGG	1 cut(s)	413
BseGI	GGATG	1 cut(s)	99
BseMI	GCAATG	2 cut(s)	51, 264
BseNI	ACTGG	2 cut(s)	138, 331
BseXI	GCAGC	1 cut(s)	297
Bsh1236I	CGCG	1 cut(s)	219
BshFI	GGCC	1 cut(s)	119
BshVI	ATCGAT	1 cut(s)	425
BslFI	GGGAC	1 cut(s)	404
BsmAI	GTCTC	1 cut(s)	102
BsmFI	GGGAC	1 cut(s)	404
BsnI	GGCC	1 cut(s)	119
Bso31I	GGTCTC	1 cut(s)	102
Bsp143I	GATC	1 cut(s)	63
BspANI	GGCC	1 cut(s)	119
BspDI	ATCGAT	1 cut(s)	425
BspFNI	CGCG	1 cut(s)	219
BspPI	GGATC	1 cut(s)	71
BspTNI	GGTCTC	1 cut(s)	102
BsrDI	GCAATG	2 cut(s)	51, 264
BsrI	ACTGG	2 cut(s)	138, 331
BssECI	CCNNGG	1 cut(s)	413
BssMI	GATC	1 cut(s)	63
BssT1I	CCWWGG	1 cut(s)	413
Bst4CI	ACNGT	1 cut(s)	296
BstF5I	GGATG	1 cut(s)	99
BstFNI	CGCG	1 cut(s)	219
BstKTI	GATC	1 cut(s)	66
BstMAI	GTCTC	1 cut(s)	102
BstMBI	GATC	1 cut(s)	63
BstNSI	RCATGY	2 cut(s)	234, 386
BstSFI	CTRYAG	1 cut(s)	292
BstUI	CGCG	1 cut(s)	219
BstV1I	GCAGC	1 cut(s)	297
BstX2I	RGATCY	1 cut(s)	63
BstYI	RGATCY	1 cut(s)	63
Bsu15I	ATCGAT	1 cut(s)	425
BsuRI	GGCC	1 cut(s)	119
BsuTUI	ATCGAT	1 cut(s)	425
BtsCI	GGATG	1 cut(s)	99
BtsIMutI	CAGTG	1 cut(s)	307
ClaI	ATCGAT	1 cut(s)	425
CseI	GACGC	1 cut(s)	39
CspCI	CAANNNNNGTGG	2 cut(s)	201, 236
CviAII	CATG	2 cut(s)	231, 383
CviJI	RGCY	3 cut(s)	119, 176, 412
CviKI_1	RGCY	3 cut(s)	119, 176, 412
DpnI	GATC	1 cut(s)	65
DpnII	GATC	1 cut(s)	63
Eco130I	CCWWGG	1 cut(s)	413
Eco31I	GGTCTC	1 cut(s)	102
EcoT14I	CCWWGG	1 cut(s)	413
ErhI	CCWWGG	1 cut(s)	413
FaeI	CATG	2 cut(s)	234, 386
FaiI	YATR	8 cut(s)	141, 232, 242, 255, 354, 384, 397, 453
FaqI	GGGAC	1 cut(s)	404
FatI	CATG	2 cut(s)	230, 382
FblI	GTMKAC	1 cut(s)	291
Fnu4HI	GCNGC	1 cut(s)	311
FokI	GGATG	1 cut(s)	86
Fsp4HI	GCNGC	1 cut(s)	311
FspBI	CTAG	4 cut(s)	57, 177, 314, 342
GluI	GCNGC	1 cut(s)	311
HaeIII	GGCC	1 cut(s)	119
HgaI	GACGC	1 cut(s)	39
Hin1II	CATG	2 cut(s)	234, 386
HinfI	GANTC	4 cut(s)	83, 96, 365, 442
HphI	GGTGA	1 cut(s)	451
Hpy166II	GTNNAC	1 cut(s)	292
Hpy188I	TCNGA	2 cut(s)	188, 286
Hpy188III	TCNNGA	4 cut(s)	17, 80, 87, 362
Hpy8I	GTNNAC	1 cut(s)	292
HpyCH4III	ACNGT	1 cut(s)	296
HpyCH4V	TGCA	2 cut(s)	161, 257
Hsp92II	CATG	2 cut(s)	234, 386
Kzo9I	GATC	1 cut(s)	63
LmnI	GCTCC	1 cut(s)	188
LpnPI	CCDG	5 cut(s)	2, 119, 233, 312, 375
Lsp1109I	GCAGC	1 cut(s)	297
MaeI	CTAG	4 cut(s)	57, 177, 314, 342
MaeIII	GTNAC	3 cut(s)	236, 322, 344
MalI	GATC	1 cut(s)	65
MboI	GATC	1 cut(s)	63
MboII	GAAGA	1 cut(s)	275
MflI	RGATCY	1 cut(s)	63
MluCI	AATT	3 cut(s)	156, 198, 370
MlyI	GAGTC	1 cut(s)	359
MmeI	TCCRAC	2 cut(s)	205, 358
MnlI	CCTC	2 cut(s)	53, 161
MseI	TTAA	1 cut(s)	92
MvnI	CGCG	1 cut(s)	219
NdeII	GATC	1 cut(s)	63
NlaIII	CATG	2 cut(s)	234, 386
NspI	RCATGY	2 cut(s)	234, 386
PciI	ACATGT	2 cut(s)	230, 382
PfeI	GAWTC	3 cut(s)	83, 96, 442
PkrI	GCNGC	1 cut(s)	312
PleI	GAGTC	1 cut(s)	359
PpsI	GAGTC	1 cut(s)	359
PscI	ACATGT	2 cut(s)	230, 382
PsrI	GAACNNNNNNTAC	2 cut(s)	329, 361
PsuI	RGATCY	1 cut(s)	63
SaqAI	TTAA	1 cut(s)	92
SatI	GCNGC	1 cut(s)	311
Sau3AI	GATC	1 cut(s)	63
SchI	GAGTC	1 cut(s)	359
SetI	ASST	2 cut(s)	114, 153
SfcI	CTRYAG	1 cut(s)	292
SpeI	ACTAGT	1 cut(s)	341
Sse9I	AATT	3 cut(s)	156, 198, 370
SspI	AATATT	2 cut(s)	127, 183
SspMI	CTAG	4 cut(s)	57, 177, 314, 342
StyI	CCWWGG	1 cut(s)	413
TaaI	ACNGT	1 cut(s)	296
TaqI	TCGA	2 cut(s)	408, 425
TasI	AATT	3 cut(s)	156, 198, 370
TfiI	GAWTC	3 cut(s)	83, 96, 442
Tru1I	TTAA	1 cut(s)	92
Tru9I	TTAA	1 cut(s)	92
TscAI	CASTG	1 cut(s)	307
TseI	GCWGC	1 cut(s)	310
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	307
XapI	RAATTY	1 cut(s)	370
XceI	RCATGY	2 cut(s)	234, 386
XmiI	GTMKAC	1 cut(s)	291
XspI	CTAG	4 cut(s)	57, 177, 314, 342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.