RLG00000019125

Mitogen-activated protein kinase kinase kinase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
N/A
Physical Location & Seq
Forward (+)
46931460 .. 46933127
1668 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019125

Sequence Viewer

Length: 426 bp
ATGCCTACGGTTCTGGTGATTGATAATGGATGCTCGATTTGGGACATTTTGAGGGACTTTGCTCTGGAAGAAGAGAGGGAAATGGGGCAGAGAAGGTTTGGTCCTTCGTCTTCTTCTGATTCATGGACCTCCGGGCAGCTGGGGAATCCAGATGCAAGCAGAGCGATGAGGACTCAAGGAGCAATTTTCCAATCACATGCAATATTGGGTTCCGAGGATGAGCGGAGTATCAGGGAAGATAGATGGCAATTGTTTGTTGAAAGGGAACAAGTGGAAGTTACGGAAATCCAGTTCGTTGCTCTAGCTCCTGGTTCTAGCACCGAACTGGGTTTGCATAACTTAGAGGAGCCATGGCCGGTAAGAATTGAATCTTTTAATCATGCATCTTCAACATTGATTTTTATGTTGCCAGGTGGTGTGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000165 GO:0000186 GO:0001101 GO:0001932 GO:0001934 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0007584 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009605 GO:0009611 GO:0009628 GO:0009631 GO:0009651 GO:0009888 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010449 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0012505 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0022622 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0031098 GO:0031323 GO:0031325 GO:0031347 GO:0031399 GO:0031401 GO:0031410 GO:0031667 GO:0031982 GO:0032147 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033554 GO:0033674 GO:0035266 GO:0035556 GO:0036211 GO:0040007 GO:0042221 GO:0042325 GO:0042327 GO:0042493 GO:0043085 GO:0043170 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048364 GO:0048507 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048589 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071902 GO:0071944 GO:0080090 GO:0080134 GO:0097159 GO:0097708 GO:0099402 GO:0140096 GO:1901363 GO:1901564 GO:1901698 GO:1901700 GO:1902065 GO:1902531 GO:1902533
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

142

Amino Acids

15.8

Weight (kDa)

4.58

Isoelectric Point (pI)

63.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 223
AciI CCGC 1 cut(s) 223
AcoI YGGCCR 1 cut(s) 353
AgsI TTSAA 3 cut(s) 260, 368, 390
AjnI CCWGG 2 cut(s) 307, 409
AloI GAACNNNNNNTCC 2 cut(s) 275, 307
AluBI AGCT 2 cut(s) 139, 305
AluI AGCT 2 cut(s) 139, 305
AoxI GGCC 1 cut(s) 353
ApeKI GCWGC 1 cut(s) 136
AspS9I GGNCC 2 cut(s) 101, 126
AsuC2I CCSGG 1 cut(s) 133
AsuHPI GGTGA 1 cut(s) 28
AvaII GGWCC 2 cut(s) 101, 126
BbsI GAAGAC 1 cut(s) 102
BbvI GCAGC 1 cut(s) 148
BccI CCATC 1 cut(s) 237
BciT130I CCWGG 2 cut(s) 309, 411
BcnI CCSGG 1 cut(s) 133
BfaI CTAG 2 cut(s) 302, 315
BisI GCNGC 1 cut(s) 137
BlsI GCNGC 1 cut(s) 138
Bme1390I CCNGG 3 cut(s) 133, 309, 411
Bme18I GGWCC 2 cut(s) 101, 126
BmgT120I GGNCC 2 cut(s) 101, 126
BmiI GGNNCC 2 cut(s) 211, 348
BmrFI CCNGG 3 cut(s) 133, 309, 411
BmrI ACTGGG 1 cut(s) 335
BmsI GCATC 3 cut(s) 20, 142, 392
BmuI ACTGGG 1 cut(s) 335
BpiI GAAGAC 1 cut(s) 102
BpuEI CTTGAG 1 cut(s) 159
BpuMI CCSGG 1 cut(s) 133
BsaJI CCNNGG 2 cut(s) 213, 350
Bse118I RCCGGY 1 cut(s) 355
Bse1I ACTGG 2 cut(s) 289, 330
BseBI CCWGG 2 cut(s) 309, 411
BseDI CCNNGG 2 cut(s) 213, 350
BseGI GGATG 2 cut(s) 35, 223
BseNI ACTGG 2 cut(s) 289, 330
BseRI GAGGAG 1 cut(s) 359
BseXI GCAGC 1 cut(s) 148
BseYI CCCAGC 1 cut(s) 139
BshFI GGCC 1 cut(s) 355
BsiSI CCGG 2 cut(s) 132, 356
BslFI GGGAC 2 cut(s) 56, 68
BsmFI GGGAC 2 cut(s) 56, 68
BsnI GGCC 1 cut(s) 355
Bsp19I CCATGG 1 cut(s) 350
BspACI CCGC 1 cut(s) 223
BspANI GGCC 1 cut(s) 355
BspLI GGNNCC 2 cut(s) 211, 348
BsrBI CCGCTC 1 cut(s) 223
BsrFI RCCGGY 1 cut(s) 355
BsrI ACTGG 2 cut(s) 289, 330
BssAI RCCGGY 1 cut(s) 355
BssECI CCNNGG 2 cut(s) 213, 350
BssT1I CCWWGG 1 cut(s) 350
Bst2UI CCWGG 2 cut(s) 309, 411
Bst4CI ACNGT 1 cut(s) 10
Bst6I CTCTTC 1 cut(s) 66
BstC8I GCNNGC 1 cut(s) 157
BstDEI CTNAG 1 cut(s) 340
BstDSI CCRYGG 1 cut(s) 350
BstF5I GGATG 2 cut(s) 35, 223
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstNI CCWGG 2 cut(s) 309, 411
BstNSI RCATGY 1 cut(s) 200
BstSCI CCNGG 3 cut(s) 131, 307, 409
BstV1I GCAGC 1 cut(s) 148
BstV2I GAAGAC 1 cut(s) 102
BsuRI GGCC 1 cut(s) 355
BtgI CCRYGG 1 cut(s) 350
BtgZI GCGATG 1 cut(s) 179
BtsCI GGATG 2 cut(s) 35, 223
Cac8I GCNNGC 1 cut(s) 157
Cfr10I RCCGGY 1 cut(s) 355
Cfr13I GGNCC 2 cut(s) 101, 126
CviAII CATG 4 cut(s) 123, 197, 351, 380
CviJI RGCY 4 cut(s) 139, 305, 349, 355
CviKI_1 RGCY 4 cut(s) 139, 305, 349, 355
DdeI CTNAG 1 cut(s) 340
EaeI YGGCCR 1 cut(s) 353
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
Eco130I CCWWGG 1 cut(s) 350
Eco47I GGWCC 2 cut(s) 101, 126
EcoRII CCWGG 2 cut(s) 307, 409
EcoT14I CCWWGG 1 cut(s) 350
EcoT22I ATGCAT 1 cut(s) 385
ErhI CCWWGG 1 cut(s) 350
FaeI CATG 4 cut(s) 126, 200, 354, 383
FaiI YATR 6 cut(s) 124, 198, 336, 352, 381, 404
FaqI GGGAC 2 cut(s) 56, 68
FatI CATG 4 cut(s) 122, 196, 350, 379
Fnu4HI GCNGC 1 cut(s) 137
FokI GGATG 2 cut(s) 42, 230
Fsp4HI GCNGC 1 cut(s) 137
FspBI CTAG 2 cut(s) 302, 315
GluI GCNGC 1 cut(s) 137
GsaI CCCAGC 1 cut(s) 143
HaeIII GGCC 1 cut(s) 355
HapII CCGG 2 cut(s) 132, 356
Hin1II CATG 4 cut(s) 126, 200, 354, 383
HinfI GANTC 4 cut(s) 119, 145, 172, 368
HpaII CCGG 2 cut(s) 132, 356
HphI GGTGA 1 cut(s) 28
Hpy188I TCNGA 2 cut(s) 118, 214
Hpy188III TCNNGA 2 cut(s) 65, 149
HpyAV CCTTC 2 cut(s) 87, 114
HpyCH4III ACNGT 1 cut(s) 10
HpyCH4V TGCA 4 cut(s) 155, 200, 334, 383
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
HpyF3I CTNAG 1 cut(s) 340
Hsp92II CATG 4 cut(s) 126, 200, 354, 383
LmnI GCTCC 3 cut(s) 179, 310, 346
Lsp1109I GCAGC 1 cut(s) 148
LweI GCATC 3 cut(s) 20, 142, 392
MaeI CTAG 2 cut(s) 302, 315
MaeIII GTNAC 1 cut(s) 277
MbiI CCGCTC 1 cut(s) 223
MboII GAAGA 6 cut(s) 80, 83, 102, 105, 248, 378
MfeI CAATTG 1 cut(s) 248
MluCI AATT 3 cut(s) 183, 248, 363
MlyI GAGTC 1 cut(s) 166
MnlI CCTC 6 cut(s) 45, 69, 139, 162, 208, 337
Mph1103I ATGCAT 1 cut(s) 385
MseI TTAA 1 cut(s) 375
MspA1I CMGCKG 1 cut(s) 139
MspI CCGG 2 cut(s) 132, 356
MspR9I CCNGG 3 cut(s) 133, 309, 411
MunI CAATTG 1 cut(s) 248
MvaI CCWGG 2 cut(s) 309, 411
MwoI GCNNNNNNNGC 1 cut(s) 161
NciI CCSGG 1 cut(s) 133
NcoI CCATGG 1 cut(s) 350
NlaIII CATG 4 cut(s) 126, 200, 354, 383
NlaIV GGNNCC 2 cut(s) 211, 348
NsiI ATGCAT 1 cut(s) 385
NspI RCATGY 1 cut(s) 200
PfeI GAWTC 3 cut(s) 119, 145, 368
PkrI GCNGC 1 cut(s) 138
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
Psp6I CCWGG 2 cut(s) 307, 409
PspFI CCCAGC 1 cut(s) 139
PspGI CCWGG 2 cut(s) 307, 409
PspN4I GGNNCC 2 cut(s) 211, 348
PspPI GGNCC 2 cut(s) 101, 126
PvuII CAGCTG 1 cut(s) 139
SaqAI TTAA 1 cut(s) 375
SatI GCNGC 1 cut(s) 137
Sau96I GGNCC 2 cut(s) 101, 126
SchI GAGTC 1 cut(s) 166
ScrFI CCNGG 3 cut(s) 133, 309, 411
SetI ASST 5 cut(s) 98, 131, 141, 307, 415
SfaNI GCATC 3 cut(s) 20, 142, 392
SinI GGWCC 2 cut(s) 101, 126
SmlI CTYRAG 1 cut(s) 174
SmoI CTYRAG 1 cut(s) 174
Sse9I AATT 3 cut(s) 183, 248, 363
SsiI CCGC 1 cut(s) 223
SspI AATATT 1 cut(s) 204
SspMI CTAG 2 cut(s) 302, 315
StyD4I CCNGG 3 cut(s) 131, 307, 409
StyI CCWWGG 1 cut(s) 350
TaaI ACNGT 1 cut(s) 10
TaqI TCGA 1 cut(s) 35
TasI AATT 3 cut(s) 183, 248, 363
TfiI GAWTC 3 cut(s) 119, 145, 368
Tru1I TTAA 1 cut(s) 375
Tru9I TTAA 1 cut(s) 375
TseI GCWGC 1 cut(s) 136
TspDTI ATGAA 1 cut(s) 111
TspGWI ACGGA 1 cut(s) 296
VpaK11BI GGWCC 2 cut(s) 101, 126
XceI RCATGY 1 cut(s) 200
XspI CTAG 2 cut(s) 302, 315
Zsp2I ATGCAT 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.