Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

47035826 .. 47036615

Gene Structure 790 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019132

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGTTTCCACCAGAGTGTTGGGCACACAGGGATATGTTGCCCCTAAGGCATCTGACAACTAAATCAGATGTGTACAGTTATGGGGTTGTGCTGTTAGAATTGCTAACAGGCAGAGTTCCAGTTGATATGAAGAGAACCCCTGGAGAAGGTGTTCTCGTTTCTTGGGCTTTGTTGCATCTGACAGATAGGGAGCAGGTTGTACAGATCATGGGTCCTGCATTGGAAGGTCAATACTCGATGAAGGAGGTCATTCGATCAGGTGGTAGCAATTGCTGCTATGTGTGTGCAACCAGAGGCAGATTATCGGCCACTGATGGCAGATGTTGTACAGTCACTGGTTCCGCTCGTGAAGATTCACATATCAACTTTGAAGGTAGGCAGATGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010065 GO:0010068 GO:0010154 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0042335 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

130

Amino Acids

14.39

Weight (kDa)

6.88

Isoelectric Point (pI)

35.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	184
AccBSI	CCGCTC	1 cut(s)	344
AciI	CCGC	1 cut(s)	342
AcoI	YGGCCR	1 cut(s)	306
AfaI	GTAC	3 cut(s)	74, 201, 328
AfiI	CCNNNNNNNGG	1 cut(s)	146
AgsI	TTSAA	1 cut(s)	371
AjnI	CCWGG	1 cut(s)	139
AleI	CACNNNNGTG	1 cut(s)	13
AloI	GAACNNNNNNTCC	2 cut(s)	135, 167
AlwNI	CAGNNNCTG	1 cut(s)	335
AoxI	GGCC	1 cut(s)	306
ApeKI	GCWGC	1 cut(s)	273
Asp700I	GAANNNNTTC	1 cut(s)	150
AspS9I	GGNCC	1 cut(s)	212
AvaII	GGWCC	1 cut(s)	212
AxyI	CCTNAGG	1 cut(s)	44
BaeGI	GKGCMC	1 cut(s)	25
BauI	CACGAG	1 cut(s)	345
BbvI	GCAGC	1 cut(s)	260
BccI	CCATC	1 cut(s)	308
BciT130I	CCWGG	1 cut(s)	141
BfaI	CTAG	1 cut(s)	388
BfuAI	ACCTGC	1 cut(s)	184
BglI	GCCNNNNNGGC	1 cut(s)	46
BisI	GCNGC	1 cut(s)	274
BlsI	GCNGC	1 cut(s)	275
Bme1390I	CCNGG	1 cut(s)	141
Bme18I	GGWCC	1 cut(s)	212
BmgT120I	GGNCC	1 cut(s)	212
BmiI	GGNNCC	2 cut(s)	213, 340
BmrFI	CCNGG	1 cut(s)	141
BmsI	GCATC	2 cut(s)	58, 184
BpmI	CTGGAG	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	139
BsaXI	ACNNNNNCTCC	2 cut(s)	135, 165
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
Bse1I	ACTGG	2 cut(s)	119, 340
Bse21I	CCTNAGG	1 cut(s)	44
BseBI	CCWGG	1 cut(s)	141
BseDI	CCNNGG	1 cut(s)	139
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseNI	ACTGG	2 cut(s)	119, 340
BseSI	GKGCMC	1 cut(s)	25
BseXI	GCAGC	1 cut(s)	260
BshFI	GGCC	1 cut(s)	308
BslI	CCNNNNNNNGG	1 cut(s)	146
BsnI	GGCC	1 cut(s)	308
Bsp1286I	GDGCHC	1 cut(s)	25
Bsp1407I	TGTACA	3 cut(s)	72, 199, 326
Bsp143I	GATC	2 cut(s)	204, 254
BspACI	CCGC	1 cut(s)	342
BspANI	GGCC	1 cut(s)	308
BspLI	GGNNCC	2 cut(s)	213, 340
BspMI	ACCTGC	1 cut(s)	184
BsrBI	CCGCTC	1 cut(s)	344
BsrGI	TGTACA	3 cut(s)	72, 199, 326
BsrI	ACTGG	2 cut(s)	119, 340
BssECI	CCNNGG	1 cut(s)	139
BssMI	GATC	2 cut(s)	204, 254
BssSI	CACGAG	1 cut(s)	345
Bst2BI	CACGAG	1 cut(s)	345
Bst2UI	CCWGG	1 cut(s)	141
Bst4CI	ACNGT	2 cut(s)	77, 331
Bst6I	CTCTTC	1 cut(s)	125
BstAPI	GCANNNNNTGC	1 cut(s)	273
BstAUI	TGTACA	3 cut(s)	72, 199, 326
BstDEI	CTNAG	1 cut(s)	44
BstENI	CCTNNNNNAGG	1 cut(s)	144
BstKTI	GATC	2 cut(s)	207, 257
BstMBI	GATC	2 cut(s)	204, 254
BstMWI	GCNNNNNNNGC	2 cut(s)	46, 273
BstNI	CCWGG	1 cut(s)	141
BstSCI	CCNGG	1 cut(s)	139
BstSLI	GKGCMC	1 cut(s)	25
BstV1I	GCAGC	1 cut(s)	260
BstXI	CCANNNNNNTGG	1 cut(s)	18
Bsu36I	CCTNAGG	1 cut(s)	44
BsuRI	GGCC	1 cut(s)	308
BtsIMutI	CAGTG	2 cut(s)	309, 333
BveI	ACCTGC	1 cut(s)	184
CaiI	CAGNNNCTG	1 cut(s)	335
Cfr13I	GGNCC	1 cut(s)	212
Csp6I	GTAC	3 cut(s)	73, 200, 327
CviAII	CATG	1 cut(s)	208
CviJI	RGCY	2 cut(s)	167, 308
CviKI_1	RGCY	2 cut(s)	167, 308
CviQI	GTAC	3 cut(s)	73, 200, 327
DdeI	CTNAG	1 cut(s)	44
DpnI	GATC	2 cut(s)	206, 256
DpnII	GATC	2 cut(s)	204, 254
EaeI	YGGCCR	1 cut(s)	306
Eam1104I	CTCTTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	125
Eco47I	GGWCC	1 cut(s)	212
Eco81I	CCTNAGG	1 cut(s)	44
EcoNI	CCTNNNNNAGG	1 cut(s)	144
EcoO109I	RGGNCCY	1 cut(s)	212
EcoRII	CCWGG	1 cut(s)	139
FaeI	CATG	1 cut(s)	211
FaiI	YATR	6 cut(s)	35, 81, 128, 209, 279, 360
FatI	CATG	1 cut(s)	207
Fnu4HI	GCNGC	1 cut(s)	274
Fsp4HI	GCNGC	1 cut(s)	274
FspBI	CTAG	1 cut(s)	388
GluI	GCNGC	1 cut(s)	274
GsuI	CTGGAG	1 cut(s)	162
HaeIII	GGCC	1 cut(s)	308
Hin1II	CATG	1 cut(s)	211
HinfI	GANTC	1 cut(s)	353
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	3 cut(s)	54, 67, 180
Hpy188III	TCNNGA	1 cut(s)	347
Hpy8I	GTNNAC	1 cut(s)	73
HpyAV	CCTTC	4 cut(s)	140, 218, 235, 365
HpyCH4III	ACNGT	2 cut(s)	77, 331
HpyCH4V	TGCA	3 cut(s)	175, 218, 287
HpyF10VI	GCNNNNNNNGC	2 cut(s)	46, 273
HpyF3I	CTNAG	1 cut(s)	44
Hsp92II	CATG	1 cut(s)	211
Kzo9I	GATC	2 cut(s)	204, 254
LmnI	GCTCC	1 cut(s)	190
Lsp1109I	GCAGC	1 cut(s)	260
LweI	GCATC	2 cut(s)	58, 184
MaeI	CTAG	1 cut(s)	388
MaeIII	GTNAC	1 cut(s)	331
MalI	GATC	2 cut(s)	206, 256
MbiI	CCGCTC	1 cut(s)	344
MboI	GATC	2 cut(s)	204, 254
MboII	GAAGA	2 cut(s)	142, 362
MfeI	CAATTG	1 cut(s)	268
MhlI	GDGCHC	1 cut(s)	25
MluCI	AATT	2 cut(s)	98, 268
MnlI	CCTC	2 cut(s)	238, 287
MroXI	GAANNNNTTC	1 cut(s)	150
MslI	CAYNNNNRTG	1 cut(s)	13
MspR9I	CCNGG	1 cut(s)	141
MunI	CAATTG	1 cut(s)	268
MvaI	CCWGG	1 cut(s)	141
MwoI	GCNNNNNNNGC	2 cut(s)	46, 273
NdeII	GATC	2 cut(s)	204, 254
NlaIII	CATG	1 cut(s)	211
NlaIV	GGNNCC	2 cut(s)	213, 340
NmuCI	GTSAC	1 cut(s)	331
OliI	CACNNNNGTG	1 cut(s)	13
PdmI	GAANNNNTTC	1 cut(s)	150
PfeI	GAWTC	1 cut(s)	353
PkrI	GCNGC	1 cut(s)	275
PpuMI	RGGWCCY	1 cut(s)	212
Psp5II	RGGWCCY	1 cut(s)	212
Psp6I	CCWGG	1 cut(s)	139
PspGI	CCWGG	1 cut(s)	139
PspN4I	GGNNCC	2 cut(s)	213, 340
PspPI	GGNCC	1 cut(s)	212
PspPPI	RGGWCCY	1 cut(s)	212
PstNI	CAGNNNCTG	1 cut(s)	335
RsaI	GTAC	3 cut(s)	74, 201, 328
RsaNI	GTAC	3 cut(s)	73, 200, 327
RseI	CAYNNNNRTG	1 cut(s)	13
SatI	GCNGC	1 cut(s)	274
Sau3AI	GATC	2 cut(s)	204, 254
Sau96I	GGNCC	1 cut(s)	212
ScrFI	CCNGG	1 cut(s)	141
SduI	GDGCHC	1 cut(s)	25
SetI	ASST	6 cut(s)	151, 198, 229, 249, 262, 376
SfaNI	GCATC	2 cut(s)	58, 184
SinI	GGWCC	1 cut(s)	212
SmiMI	CAYNNNNRTG	1 cut(s)	13
Sse9I	AATT	2 cut(s)	98, 268
SsiI	CCGC	1 cut(s)	342
SspMI	CTAG	1 cut(s)	388
StyD4I	CCNGG	1 cut(s)	139
TaaI	ACNGT	2 cut(s)	77, 331
TaqI	TCGA	2 cut(s)	236, 253
TasI	AATT	2 cut(s)	98, 268
TatI	WGTACW	3 cut(s)	72, 199, 326
TfiI	GAWTC	1 cut(s)	353
TscAI	CASTG	2 cut(s)	316, 340
TseFI	GTSAC	1 cut(s)	331
TseI	GCWGC	1 cut(s)	273
Tsp45I	GTSAC	1 cut(s)	331
TspDTI	ATGAA	2 cut(s)	143, 254
TspRI	CASTG	2 cut(s)	316, 340
VpaK11BI	GGWCC	1 cut(s)	212
XagI	CCTNNNNNAGG	1 cut(s)	144
XcmI	CCANNNNNNNNNTGG	1 cut(s)	15
XmnI	GAANNNNTTC	1 cut(s)	150
XspI	CTAG	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.