Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

48867791 .. 48868372

Gene Structure 582 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019241

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGCGAAGATGGACGAAATCAGAGTCTGGGTCATCGGAATATTGATGGGTCTTATCTGGGTTTTGCTCAGAGACCTTAGCTCCGGCGAGGTGGGACAAGGTGCTCCGTCGGGTTTGATGACGACGACCTTCTGGTTGGTGATGATTTCTTCGGCGGAGTCGAGTAGAGATAAGCATCAAGACAGGTCGACCCAATACCACCGACCAAAACGAAAACCCCAAAAACAGAGAAGCATCAAGCTCGACCCATTCTCGAGACCCAGCGACCTGGAAAAAGACCCGACCAGAATTTCCGTTTCTAGCGACCAAATGGCTGCAGTGGATGTGGAGGACGTACGGCGCGAGGTGGCGATAATGAAGCATCTGCCCAAGAATTCGAGTATTGTGAGCTTGCAGGAGGCTTGTGAAGACGACCACGCTGTGCATTTGGTGATGGAGTTGTGTGAGGGCAGCGAGCTCTTCGATCGAATTGTGGCCAGGGGCATTATACAGAGAGAGCCGCCGCGGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7 EF-hand_8 Pkinase

Protein Analysis

171

Amino Acids

19.27

Weight (kDa)

6.52

Isoelectric Point (pI)

53.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	106 - 165	2.3e-08	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	188
AccII	CGCG	2 cut(s)	342, 505
AciI	CCGC	4 cut(s)	155, 500, 503, 505
AcoI	YGGCCR	2 cut(s)	474, 506
AcsI	RAATTY	2 cut(s)	288, 373
AdeI	CACNNNGTG	1 cut(s)	421
AfaI	GTAC	1 cut(s)	336
AjnI	CCWGG	2 cut(s)	267, 476
AluBI	AGCT	4 cut(s)	81, 241, 390, 457
AluI	AGCT	4 cut(s)	81, 241, 390, 457
Alw21I	GWGCWC	2 cut(s)	106, 459
Alw26I	GTCTC	2 cut(s)	66, 250
AlwNI	CAGNNNCTG	1 cut(s)	27
Ama87I	CYCGRG	1 cut(s)	253
AoxI	GGCC	2 cut(s)	474, 506
ApeKI	GCWGC	2 cut(s)	314, 450
ApoI	RAATTY	2 cut(s)	288, 373
ArsI	GACNNNNNNTTYG	2 cut(s)	9, 41
AspLEI	GCGC	1 cut(s)	342
AsuHPI	GGTGA	2 cut(s)	151, 442
AvaI	CYCGRG	1 cut(s)	253
BalI	TGGCCA	1 cut(s)	476
BanII	GRGCYC	1 cut(s)	459
BbsI	GAAGAC	1 cut(s)	414
Bbv12I	GWGCWC	2 cut(s)	106, 459
BbvI	GCAGC	2 cut(s)	301, 462
BccI	CCATC	3 cut(s)	4, 40, 427
BceAI	ACGGC	1 cut(s)	353
BcgI	CGANNNNNNTGC	2 cut(s)	223, 257
BciT130I	CCWGG	2 cut(s)	269, 478
BcoDI	GTCTC	2 cut(s)	66, 250
BfaI	CTAG	1 cut(s)	300
BfmI	CTRYAG	1 cut(s)	315
BglI	GCCNNNNNGGC	1 cut(s)	505
BisI	GCNGC	5 cut(s)	315, 451, 500, 503, 506
BlsI	GCNGC	5 cut(s)	316, 452, 501, 504, 507
Bme1390I	CCNGG	2 cut(s)	269, 478
BmeT110I	CYCGRG	1 cut(s)	253
BmrFI	CCNGG	2 cut(s)	269, 478
BmsI	GCATC	3 cut(s)	184, 243, 370
BpiI	GAAGAC	1 cut(s)	414
Bpu10I	CCTNAGC	1 cut(s)	77
BsaBI	GATNNNNATC	1 cut(s)	174
BsaI	GGTCTC	2 cut(s)	66, 250
BsaJI	CCNNGG	2 cut(s)	477, 503
BsaXI	ACNNNNNCTCC	2 cut(s)	65, 95
Bse8I	GATNNNNATC	1 cut(s)	174
BseBI	CCWGG	2 cut(s)	269, 478
BseDI	CCNNGG	2 cut(s)	477, 503
BseGI	GGATG	1 cut(s)	328
BseJI	GATNNNNATC	1 cut(s)	174
BseMII	CTCAG	1 cut(s)	82
BseXI	GCAGC	2 cut(s)	301, 462
BseYI	CCCAGC	1 cut(s)	260
Bsh1236I	CGCG	2 cut(s)	342, 505
Bsh1285I	CGRYCG	1 cut(s)	466
BshFI	GGCC	2 cut(s)	476, 508
BsiEI	CGRYCG	1 cut(s)	466
BsiHKAI	GWGCWC	2 cut(s)	106, 459
BsiHKCI	CYCGRG	1 cut(s)	253
BsiSI	CCGG	1 cut(s)	84
BsiWI	CGTACG	1 cut(s)	334
BslFI	GGGAC	1 cut(s)	108
BsmAI	GTCTC	2 cut(s)	66, 250
BsmFI	GGGAC	1 cut(s)	108
BsnI	GGCC	2 cut(s)	476, 508
Bso31I	GGTCTC	2 cut(s)	66, 250
BsoBI	CYCGRG	1 cut(s)	253
Bsp1286I	GDGCHC	2 cut(s)	106, 459
Bsp143I	GATC	1 cut(s)	463
BspACI	CCGC	4 cut(s)	155, 500, 503, 505
BspANI	GGCC	2 cut(s)	476, 508
BspCNI	CTCAG	1 cut(s)	81
BspFNI	CGCG	2 cut(s)	342, 505
BspMAI	CTGCAG	1 cut(s)	319
BspQI	GCTCTTC	1 cut(s)	464
BspTNI	GGTCTC	2 cut(s)	66, 250
BssECI	CCNNGG	2 cut(s)	477, 503
BssMI	GATC	1 cut(s)	463
Bst2UI	CCWGG	2 cut(s)	269, 478
Bst6I	CTCTTC	1 cut(s)	464
BstC8I	GCNNGC	2 cut(s)	392, 455
BstDEI	CTNAG	2 cut(s)	68, 77
BstDSI	CCRYGG	1 cut(s)	503
BstF5I	GGATG	1 cut(s)	328
BstFNI	CGCG	2 cut(s)	342, 505
BstHHI	GCGC	1 cut(s)	342
BstKTI	GATC	1 cut(s)	466
BstMAI	GTCTC	2 cut(s)	66, 250
BstMBI	GATC	1 cut(s)	463
BstMCI	CGRYCG	1 cut(s)	466
BstMWI	GCNNNNNNNGC	1 cut(s)	505
BstNI	CCWGG	2 cut(s)	269, 478
BstSCI	CCNGG	2 cut(s)	267, 476
BstSFI	CTRYAG	1 cut(s)	315
BstUI	CGCG	2 cut(s)	342, 505
BstV1I	GCAGC	2 cut(s)	301, 462
BstV2I	GAAGAC	1 cut(s)	414
BstXI	CCANNNNNNTGG	1 cut(s)	268
BsuRI	GGCC	2 cut(s)	476, 508
BtgI	CCRYGG	1 cut(s)	503
BtsCI	GGATG	1 cut(s)	328
BtsI	GCAGTG	1 cut(s)	324
BtsIMutI	CAGTG	1 cut(s)	324
Cac8I	GCNNGC	2 cut(s)	392, 455
CaiI	CAGNNNCTG	1 cut(s)	27
CfoI	GCGC	1 cut(s)	342
Cfr42I	CCGCGG	1 cut(s)	506
Csp6I	GTAC	1 cut(s)	335
CviAII	CATG	1 cut(s)	510
CviJI	RGCY	9 cut(s)	81, 241, 314, 390, 401, 457, 476, 499, 508
CviKI_1	RGCY	9 cut(s)	81, 241, 314, 390, 401, 457, 476, 499, 508
CviQI	GTAC	1 cut(s)	335
DdeI	CTNAG	2 cut(s)	68, 77
DpnI	GATC	1 cut(s)	465
DpnII	GATC	1 cut(s)	463
DraIII	CACNNNGTG	1 cut(s)	421
EaeI	YGGCCR	2 cut(s)	474, 506
Eam1104I	CTCTTC	1 cut(s)	464
EarI	CTCTTC	1 cut(s)	464
EciI	GGCGGA	1 cut(s)	170
Ecl136II	GAGCTC	1 cut(s)	457
Eco24I	GRGCYC	1 cut(s)	459
Eco31I	GGTCTC	2 cut(s)	66, 250
Eco53kI	GAGCTC	1 cut(s)	457
Eco88I	CYCGRG	1 cut(s)	253
EcoICRI	GAGCTC	1 cut(s)	457
EcoRI	GAATTC	1 cut(s)	373
EcoRII	CCWGG	2 cut(s)	267, 476
EcoT38I	GRGCYC	1 cut(s)	459
FaeI	CATG	1 cut(s)	513
FaiI	YATR	2 cut(s)	488, 511
FaqI	GGGAC	1 cut(s)	108
FatI	CATG	1 cut(s)	509
FblI	GTMKAC	1 cut(s)	188
Fnu4HI	GCNGC	5 cut(s)	315, 451, 500, 503, 506
FokI	GGATG	1 cut(s)	335
FriOI	GRGCYC	1 cut(s)	459
Fsp4HI	GCNGC	5 cut(s)	315, 451, 500, 503, 506
FspBI	CTAG	1 cut(s)	300
GlaI	GCGC	1 cut(s)	341
GluI	GCNGC	5 cut(s)	315, 451, 500, 503, 506
GsaI	CCCAGC	1 cut(s)	264
HaeIII	GGCC	2 cut(s)	476, 508
HapII	CCGG	1 cut(s)	84
HhaI	GCGC	1 cut(s)	342
Hin1II	CATG	1 cut(s)	513
Hin6I	GCGC	1 cut(s)	340
HinP1I	GCGC	1 cut(s)	340
HincII	GTYRAC	1 cut(s)	189
HindII	GTYRAC	1 cut(s)	189
HinfI	GANTC	2 cut(s)	24, 158
HpaII	CCGG	1 cut(s)	84
HphI	GGTGA	2 cut(s)	151, 442
Hpy166II	GTNNAC	1 cut(s)	189
Hpy188I	TCNGA	3 cut(s)	23, 38, 71
Hpy188III	TCNNGA	3 cut(s)	179, 253, 255
Hpy8I	GTNNAC	1 cut(s)	189
Hpy99I	CGWCG	2 cut(s)	112, 127
HpyAV	CCTTC	1 cut(s)	139
HpyCH4IV	ACGT	1 cut(s)	333
HpyCH4V	TGCA	3 cut(s)	317, 394, 424
HpyF10VI	GCNNNNNNNGC	1 cut(s)	505
HpyF3I	CTNAG	2 cut(s)	68, 77
HpySE526I	ACGT	1 cut(s)	333
Hsp92II	CATG	1 cut(s)	513
HspAI	GCGC	1 cut(s)	340
KspI	CCGCGG	1 cut(s)	506
Kzo9I	GATC	1 cut(s)	463
LguI	GCTCTTC	1 cut(s)	464
LmnI	GCTCC	2 cut(s)	86, 109
Lsp1109I	GCAGC	2 cut(s)	301, 462
LweI	GCATC	3 cut(s)	184, 243, 370
MaeI	CTAG	1 cut(s)	300
MaeII	ACGT	1 cut(s)	333
MalI	GATC	1 cut(s)	465
MboI	GATC	1 cut(s)	463
MboII	GAAGA	4 cut(s)	19, 141, 419, 451
MhlI	GDGCHC	2 cut(s)	106, 459
MlsI	TGGCCA	1 cut(s)	476
MluCI	AATT	3 cut(s)	288, 373, 468
MluNI	TGGCCA	1 cut(s)	476
MlyI	GAGTC	2 cut(s)	33, 167
MnlI	CCTC	5 cut(s)	82, 322, 337, 391, 439
Mox20I	TGGCCA	1 cut(s)	476
MscI	TGGCCA	1 cut(s)	476
Msp20I	TGGCCA	1 cut(s)	476
MspA1I	CMGCKG	1 cut(s)	505
MspI	CCGG	1 cut(s)	84
MspR9I	CCNGG	2 cut(s)	269, 478
MvaI	CCWGG	2 cut(s)	269, 478
MvnI	CGCG	2 cut(s)	342, 505
MwoI	GCNNNNNNNGC	1 cut(s)	505
NdeII	GATC	1 cut(s)	463
NlaIII	CATG	1 cut(s)	513
PaeR7I	CTCGAG	1 cut(s)	253
PciSI	GCTCTTC	1 cut(s)	464
PcsI	WCGNNNNNNNCGW	2 cut(s)	158, 339
Pfl23II	CGTACG	1 cut(s)	334
PkrI	GCNGC	5 cut(s)	316, 452, 501, 504, 507
Ple19I	CGATCG	1 cut(s)	466
PleI	GAGTC	2 cut(s)	32, 166
PpsI	GAGTC	2 cut(s)	32, 166
Psp124BI	GAGCTC	1 cut(s)	459
Psp6I	CCWGG	2 cut(s)	267, 476
PspFI	CCCAGC	1 cut(s)	260
PspGI	CCWGG	2 cut(s)	267, 476
PspLI	CGTACG	1 cut(s)	334
PstI	CTGCAG	1 cut(s)	319
PstNI	CAGNNNCTG	1 cut(s)	27
PvuI	CGATCG	1 cut(s)	466
RsaI	GTAC	1 cut(s)	336
RsaNI	GTAC	1 cut(s)	335
SacI	GAGCTC	1 cut(s)	459
SacII	CCGCGG	1 cut(s)	506
SalI	GTCGAC	1 cut(s)	187
SapI	GCTCTTC	1 cut(s)	464
SatI	GCNGC	5 cut(s)	315, 451, 500, 503, 506
Sau3AI	GATC	1 cut(s)	463
SchI	GAGTC	2 cut(s)	33, 167
ScrFI	CCNGG	2 cut(s)	269, 478
SduI	GDGCHC	2 cut(s)	106, 459
SfaNI	GCATC	3 cut(s)	184, 243, 370
SfcI	CTRYAG	1 cut(s)	315
Sfr274I	CTCGAG	1 cut(s)	253
Sfr303I	CCGCGG	1 cut(s)	506
SgrBI	CCGCGG	1 cut(s)	506
SlaI	CTCGAG	1 cut(s)	253
SmlI	CTYRAG	1 cut(s)	253
SmoI	CTYRAG	1 cut(s)	253
Sse9I	AATT	3 cut(s)	288, 373, 468
SsiI	CCGC	4 cut(s)	155, 500, 503, 505
SspI	AATATT	1 cut(s)	42
SspMI	CTAG	1 cut(s)	300
SstI	GAGCTC	1 cut(s)	459
StyD4I	CCNGG	2 cut(s)	267, 476
TaiI	ACGT	1 cut(s)	336
TaqI	TCGA	7 cut(s)	161, 188, 243, 254, 377, 462, 466
TasI	AATT	3 cut(s)	288, 373, 468
TauI	GCSGC	3 cut(s)	502, 505, 508
TscAI	CASTG	1 cut(s)	324
TseI	GCWGC	2 cut(s)	314, 450
TspDTI	ATGAA	1 cut(s)	371
TspGWI	ACGGA	2 cut(s)	96, 283
TspRI	CASTG	1 cut(s)	324
XapI	RAATTY	2 cut(s)	288, 373
XhoI	CTCGAG	1 cut(s)	253
XmiI	GTMKAC	1 cut(s)	188
XspI	CTAG	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.