RLG00000021659
ERF Family

Ethylene-responsive transcription factor ERF109-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
N/A
Physical Location & Seq
Forward (+)
77042196 .. 77043166
971 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021659

Sequence Viewer

Length: 879 bp
ATGTGGGTGGATATTCGGGACCCCCGCCGTAAAGCTCGGGTGTGGCTCGTCACGTTCCTGACGGCGGAGGAGGTAGCCAGGGCTTACGAAAAGCCTGCCGCCGAGTTTCGTGGAGACAAAGCCAGGCCTGCTTCACTCACGATGACAAGACGAGGACGGGATACGACGTGGATGGGCCGAAGCCGGAGAAGACGAGGACGGAGTACGAAGAGGATGGGCCGAAGCCGGGGAAGAAAAAACGCCGTCGAACCCGGGATAGAAAAGAACGACGCCGTCGAACCAGGCTCAAGGAAGAAGAGGAAGGCGCCGTCGAACTCGAGGAAGAAGAGGACGACGCCGTCCAACCCGGCTCGAGGAAGAAGGGGTAGACGCGCAGTCGAACCCAGCTGGAGGAAGAAGACGACGGCGCCGTCGAACTCGAGGAAGATGAGGAAGACGCTGTCGAACCCGGGGAAGAAGAGGGAAGAAGAGGACGGCGCCGTCGAACTCGAGGAAGATGAGGAAGACGCTGTCGAACCCGGGGAAGAAGAGGAGGACGCCCTCGAACCCGGGAAAGAAGAAGATGAAGCTGTCGAACCCCGCTGGATGATGAAGAGGACGGCGCCGTCGAACTCGAGGAAGACGCCGTCGATCCCGGCTGGAGGAAGAAGAGGACGGTGCCGTCGAACTCGAGAAAGAAGAGGACGGCGCTGTCGAACTAGAGAAAGAAGAGGAAGACGCCGTCGAACCCTGCTGAAGGAAGAAGAGGACGGTGCCATCGAACTCGAGGAAGAAGAGGAAGACGCCGTCGAAGCCGGGGAAGAAGAGGAGGACGTCGAAGCCGGAGAAGAAGAGGAAGACGAAGCTTGGAAGATAAAAGAGGACGGCGGCGGAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

293

Amino Acids

33.74

Weight (kDa)

9.84

Isoelectric Point (pI)

96.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 6 cut(s) 337, 409, 479, 604, 660, 690
AatII GACGTC 1 cut(s) 816
AccB1I GGYRCC 6 cut(s) 304, 406, 476, 601, 657, 752
AccI GTMKAC 1 cut(s) 367
AccII CGCG 1 cut(s) 372
AciI CCGC 6 cut(s) 25, 65, 99, 580, 867, 870
AclWI GGATC 1 cut(s) 625
AcuI CTGAAG 1 cut(s) 755
AfaI GTAC 1 cut(s) 205
AfiI CCNNNNNNNGG 6 cut(s) 64, 226, 353, 390, 641, 736
AhdI GACNNNNNGTC 1 cut(s) 374
AjiI CACGTC 1 cut(s) 168
AjnI CCWGG 3 cut(s) 77, 122, 280
AluBI AGCT 4 cut(s) 35, 387, 569, 845
AluI AGCT 4 cut(s) 35, 387, 569, 845
Alw26I GTCTC 1 cut(s) 108
AlwI GGATC 1 cut(s) 625
AoxI GGCC 3 cut(s) 125, 175, 217
AspLEI GCGC 6 cut(s) 307, 374, 409, 479, 604, 690
AspS9I GGNCC 3 cut(s) 19, 175, 217
AvaII GGWCC 1 cut(s) 19
BanI GGYRCC 6 cut(s) 304, 406, 476, 601, 657, 752
BbsI GAAGAC 8 cut(s) 196, 404, 440, 510, 626, 721, 786, 843
BccI CCATC 3 cut(s) 166, 208, 764
BcgI CGANNNNNNTGC 2 cut(s) 77, 111
BciT130I CCWGG 3 cut(s) 79, 124, 282
BciVI GTATCC 1 cut(s) 154
BcoDI GTCTC 1 cut(s) 108
BfaI CTAG 1 cut(s) 699
BfoI RGCGCY 5 cut(s) 308, 410, 480, 605, 691
BfuI GTATCC 1 cut(s) 154
BisI GCNGC 2 cut(s) 99, 868
BlsI GCNGC 2 cut(s) 100, 869
Bme18I GGWCC 1 cut(s) 19
BmeRI GACNNNNNGTC 1 cut(s) 374
BmgBI CACGTC 1 cut(s) 168
BmgT120I GGNCC 3 cut(s) 19, 175, 217
BmiI GGNNCC 8 cut(s) 20, 21, 306, 408, 478, 603, 659, 754
BpiI GAAGAC 8 cut(s) 196, 404, 440, 510, 626, 721, 786, 843
BpmI CTGGAG 2 cut(s) 409, 660
BpuEI CTTGAG 1 cut(s) 271
BsaJI CCNNGG 9 cut(s) 78, 226, 251, 448, 449, 518, 519, 548, 795
Bsc4I CCNNNNNNNGG 6 cut(s) 64, 226, 353, 390, 641, 736
BseBI CCWGG 3 cut(s) 79, 124, 282
BseDI CCNNGG 9 cut(s) 78, 226, 251, 448, 449, 518, 519, 548, 795
BseGI GGATG 3 cut(s) 177, 219, 591
BseLI CCNNNNNNNGG 6 cut(s) 64, 226, 353, 390, 641, 736
BseRI GAGGAG 3 cut(s) 83, 545, 821
BseYI CCCAGC 1 cut(s) 383
Bsh1236I CGCG 1 cut(s) 372
BshFI GGCC 3 cut(s) 127, 177, 219
BshNI GGYRCC 6 cut(s) 304, 406, 476, 601, 657, 752
BslFI GGGAC 1 cut(s) 32
BslI CCNNNNNNNGG 6 cut(s) 64, 226, 353, 390, 641, 736
BsmAI GTCTC 1 cut(s) 108
BsmFI GGGAC 1 cut(s) 32
BsnI GGCC 3 cut(s) 127, 177, 219
Bsp143I GATC 1 cut(s) 630
BspACI CCGC 6 cut(s) 25, 65, 99, 580, 867, 870
BspANI GGCC 3 cut(s) 127, 177, 219
BspFNI CGCG 1 cut(s) 372
BspLI GGNNCC 8 cut(s) 20, 21, 306, 408, 478, 603, 659, 754
BspPI GGATC 1 cut(s) 625
BspT107I GGYRCC 6 cut(s) 304, 406, 476, 601, 657, 752
BssECI CCNNGG 9 cut(s) 78, 226, 251, 448, 449, 518, 519, 548, 795
BssMI GATC 1 cut(s) 630
Bst2UI CCWGG 3 cut(s) 79, 124, 282
Bst4CI ACNGT 2 cut(s) 657, 752
BstC8I GCNNGC 2 cut(s) 96, 129
BstENI CCTNNNNNAGG 1 cut(s) 734
BstF5I GGATG 3 cut(s) 177, 219, 591
BstFNI CGCG 1 cut(s) 372
BstH2I RGCGCY 5 cut(s) 308, 410, 480, 605, 691
BstHHI GCGC 6 cut(s) 307, 374, 409, 479, 604, 690
BstKTI GATC 1 cut(s) 633
BstMAI GTCTC 1 cut(s) 108
BstMBI GATC 1 cut(s) 630
BstMWI GCNNNNNNNGC 2 cut(s) 128, 791
BstNI CCWGG 3 cut(s) 79, 124, 282
BstUI CGCG 1 cut(s) 372
BstV2I GAAGAC 8 cut(s) 196, 404, 440, 510, 626, 721, 786, 843
BsuI GTATCC 1 cut(s) 154
BsuRI GGCC 3 cut(s) 127, 177, 219
BtrI CACGTC 1 cut(s) 168
BtsCI GGATG 3 cut(s) 177, 219, 591
Cac8I GCNNGC 2 cut(s) 96, 129
CfoI GCGC 6 cut(s) 307, 374, 409, 479, 604, 690
Cfr13I GGNCC 3 cut(s) 19, 175, 217
Cfr9I CCCGGG 4 cut(s) 251, 448, 518, 548
CseI GACGC 9 cut(s) 278, 343, 378, 445, 515, 545, 631, 726, 791
Csp6I GTAC 1 cut(s) 204
CviQI GTAC 1 cut(s) 204
DinI GGCGCC 4 cut(s) 306, 408, 478, 603
DpnI GATC 1 cut(s) 632
DpnII GATC 1 cut(s) 630
DrdI GACNNNNNNGTC 6 cut(s) 337, 409, 479, 604, 660, 690
DriI GACNNNNNGTC 1 cut(s) 374
DseDI GACNNNNNNGTC 6 cut(s) 337, 409, 479, 604, 660, 690
Eam1105I GACNNNNNGTC 1 cut(s) 374
EciI GGCGGA 1 cut(s) 80
Eco147I AGGCCT 1 cut(s) 127
Eco47I GGWCC 1 cut(s) 19
Eco57I CTGAAG 1 cut(s) 755
EcoNI CCTNNNNNAGG 1 cut(s) 734
EcoO109I RGGNCCY 1 cut(s) 19
EcoRII CCWGG 3 cut(s) 77, 122, 280
EgeI GGCGCC 4 cut(s) 306, 408, 478, 603
EheI GGCGCC 4 cut(s) 306, 408, 478, 603
FaqI GGGAC 1 cut(s) 32
FauI CCCGC 2 cut(s) 32, 587
FblI GTMKAC 1 cut(s) 367
Fnu4HI GCNGC 2 cut(s) 99, 868
FokI GGATG 3 cut(s) 184, 226, 598
Fsp4HI GCNGC 2 cut(s) 99, 868
FspBI CTAG 1 cut(s) 699
GlaI GCGC 6 cut(s) 306, 373, 408, 478, 603, 689
GluI GCNGC 2 cut(s) 99, 868
GsaI CCCAGC 1 cut(s) 387
GsuI CTGGAG 2 cut(s) 409, 660
HaeII RGCGCY 5 cut(s) 308, 410, 480, 605, 691
HaeIII GGCC 3 cut(s) 127, 177, 219
HgaI GACGC 9 cut(s) 278, 343, 378, 445, 515, 545, 631, 726, 791
HhaI GCGC 6 cut(s) 307, 374, 409, 479, 604, 690
Hin6I GCGC 6 cut(s) 305, 372, 407, 477, 602, 688
HinP1I GCGC 6 cut(s) 305, 372, 407, 477, 602, 688
HindIII AAGCTT 1 cut(s) 843
Hpy166II GTNNAC 1 cut(s) 368
Hpy188III TCNNGA 4 cut(s) 17, 58, 139, 671
Hpy8I GTNNAC 1 cut(s) 368
HpyAV CCTTC 3 cut(s) 295, 354, 730
HpyCH4III ACNGT 2 cut(s) 657, 752
HpyCH4IV ACGT 3 cut(s) 53, 167, 813
HpyF10VI GCNNNNNNNGC 2 cut(s) 128, 791
HpySE526I ACGT 3 cut(s) 53, 167, 813
HspAI GCGC 6 cut(s) 305, 372, 407, 477, 602, 688
KasI GGCGCC 4 cut(s) 304, 406, 476, 601
KflI GGGWCCC 1 cut(s) 19
Kzo9I GATC 1 cut(s) 630
MaeI CTAG 1 cut(s) 699
MaeII ACGT 3 cut(s) 53, 167, 813
MaeIII GTNAC 1 cut(s) 49
MalI GATC 1 cut(s) 632
MboI GATC 1 cut(s) 630
Mly113I GGCGCC 4 cut(s) 305, 407, 477, 602
MmeI TCCRAC 1 cut(s) 366
MspA1I CMGCKG 2 cut(s) 387, 582
MvaI CCWGG 3 cut(s) 79, 124, 282
MvnI CGCG 1 cut(s) 372
MwoI GCNNNNNNNGC 2 cut(s) 128, 791
NarI GGCGCC 4 cut(s) 305, 407, 477, 602
NdeII GATC 1 cut(s) 630
NlaIV GGNNCC 8 cut(s) 20, 21, 306, 408, 478, 603, 659, 754
NmeAIII GCCGAG 1 cut(s) 127
NmuCI GTSAC 1 cut(s) 49
PaeR7I CTCGAG 7 cut(s) 316, 351, 418, 488, 613, 669, 764
PceI AGGCCT 1 cut(s) 127
PcsI WCGNNNNNNNCGW 8 cut(s) 273, 407, 410, 480, 605, 661, 691, 756
PflFI GACNNNGTC 7 cut(s) 272, 337, 439, 509, 625, 720, 785
PkrI GCNGC 2 cut(s) 100, 869
PluTI GGCGCC 4 cut(s) 308, 410, 480, 605
PpuMI RGGWCCY 1 cut(s) 19
Psp5II RGGWCCY 1 cut(s) 19
Psp6I CCWGG 3 cut(s) 77, 122, 280
PspFI CCCAGC 1 cut(s) 383
PspGI CCWGG 3 cut(s) 77, 122, 280
PspN4I GGNNCC 8 cut(s) 20, 21, 306, 408, 478, 603, 659, 754
PspPI GGNCC 3 cut(s) 19, 175, 217
PspPPI RGGWCCY 1 cut(s) 19
PspXI VCTCGAGB 6 cut(s) 316, 351, 418, 488, 613, 764
PsyI GACNNNGTC 7 cut(s) 272, 337, 439, 509, 625, 720, 785
PvuII CAGCTG 1 cut(s) 387
RsaI GTAC 1 cut(s) 205
RsaNI GTAC 1 cut(s) 204
SatI GCNGC 2 cut(s) 99, 868
Sau3AI GATC 1 cut(s) 630
Sau96I GGNCC 3 cut(s) 19, 175, 217
SetI ASST 8 cut(s) 37, 56, 75, 170, 389, 571, 816, 847
SfoI GGCGCC 4 cut(s) 306, 408, 478, 603
Sfr274I CTCGAG 7 cut(s) 316, 351, 418, 488, 613, 669, 764
SinI GGWCC 1 cut(s) 19
SlaI CTCGAG 7 cut(s) 316, 351, 418, 488, 613, 669, 764
SmaI CCCGGG 4 cut(s) 253, 450, 520, 550
SmlI CTYRAG 8 cut(s) 286, 316, 351, 418, 488, 613, 669, 764
SmoI CTYRAG 8 cut(s) 286, 316, 351, 418, 488, 613, 669, 764
SseBI AGGCCT 1 cut(s) 127
SsiI CCGC 6 cut(s) 25, 65, 99, 580, 867, 870
SspDI GGCGCC 4 cut(s) 304, 406, 476, 601
SspMI CTAG 1 cut(s) 699
StuI AGGCCT 1 cut(s) 127
TaaI ACNGT 2 cut(s) 657, 752
TaiI ACGT 3 cut(s) 56, 170, 816
TauI GCSGC 2 cut(s) 101, 870
TseFI GTSAC 1 cut(s) 49
Tsp45I GTSAC 1 cut(s) 49
TspDTI ATGAA 2 cut(s) 579, 605
TspGWI ACGGA 1 cut(s) 214
TspMI CCCGGG 4 cut(s) 251, 448, 518, 548
Tth111I GACNNNGTC 7 cut(s) 272, 337, 439, 509, 625, 720, 785
VpaK11BI GGWCC 1 cut(s) 19
XagI CCTNNNNNAGG 1 cut(s) 734
XhoI CTCGAG 7 cut(s) 316, 351, 418, 488, 613, 669, 764
XmaI CCCGGG 4 cut(s) 251, 448, 518, 548
XmiI GTMKAC 1 cut(s) 367
XspI CTAG 1 cut(s) 699
ZraI GACGTC 1 cut(s) 814
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.