RLG00000021952

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
N/A
Physical Location & Seq
Reverse (-)
79489035 .. 79489626
592 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021952

Sequence Viewer

Length: 342 bp
ATGAATCTGCTTCTTTGCCTCAAAAGCAGCTTAGATGCCTTGGATGATGAAATGCCTATGGTCAAGGAATGTTTCTTAGACCTAGGTGCATTTCCAGAAGATGCTATTATCCAAGTTACAGCTCTCATTGATATATGGGCAGAGTTGTTTGATTTAGATGAAGAGGCGTCATGCATTGCCAAACTCTATGAACTCAACAATCGCAATCTAGCTCGTTTACGAGAAGGACGGAGAATTCTCAGTGAAATTGCCCAACATGCAATTACCAGAGGCAGAGGTTCTAGTCTTCAATTTTCAATCAAAAACCTATGCCTGACCCGAATTTGTGGAGAGAACGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

114

Amino Acids

12.69

Weight (kDa)

4.71

Isoelectric Point (pI)

40.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 234, 321
AcyI GRCGYC 1 cut(s) 167
AgsI TTSAA 2 cut(s) 290, 297
AluBI AGCT 3 cut(s) 30, 122, 212
AluI AGCT 3 cut(s) 30, 122, 212
ApeKI GCWGC 1 cut(s) 27
ApoI RAATTY 2 cut(s) 234, 321
AspA2I CCTAGG 1 cut(s) 82
AvrII CCTAGG 1 cut(s) 82
BbsI GAAGAC 1 cut(s) 278
BbvI GCAGC 1 cut(s) 39
BfaI CTAG 3 cut(s) 83, 209, 282
BisI GCNGC 1 cut(s) 28
BlnI CCTAGG 1 cut(s) 82
BlsI GCNGC 1 cut(s) 29
BmsI GCATC 2 cut(s) 25, 91
BpiI GAAGAC 1 cut(s) 278
BsaHI GRCGYC 1 cut(s) 167
BsaJI CCNNGG 2 cut(s) 39, 82
Bse3DI GCAATG 1 cut(s) 174
BseDI CCNNGG 2 cut(s) 39, 82
BseGI GGATG 1 cut(s) 49
BseMI GCAATG 1 cut(s) 174
BseMII CTCAG 1 cut(s) 253
BseXI GCAGC 1 cut(s) 39
BspCNI CTCAG 1 cut(s) 252
BsrDI GCAATG 1 cut(s) 174
BssECI CCNNGG 2 cut(s) 39, 82
BssNI GRCGYC 1 cut(s) 167
BssT1I CCWWGG 2 cut(s) 39, 82
Bst6I CTCTTC 1 cut(s) 156
BstACI GRCGYC 1 cut(s) 167
BstDEI CTNAG 3 cut(s) 31, 76, 239
BstF5I GGATG 1 cut(s) 49
BstMWI GCNNNNNNNGC 2 cut(s) 24, 257
BstNSI RCATGY 1 cut(s) 260
BstV1I GCAGC 1 cut(s) 39
BstV2I GAAGAC 1 cut(s) 278
BtsCI GGATG 1 cut(s) 49
BtsIMutI CAGTG 1 cut(s) 247
CseI GACGC 1 cut(s) 156
CviAII CATG 2 cut(s) 171, 257
CviJI RGCY 3 cut(s) 30, 122, 212
CviKI_1 RGCY 3 cut(s) 30, 122, 212
DdeI CTNAG 3 cut(s) 31, 76, 239
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
Eco130I CCWWGG 2 cut(s) 39, 82
EcoRI GAATTC 1 cut(s) 234
EcoT14I CCWWGG 2 cut(s) 39, 82
EcoT22I ATGCAT 1 cut(s) 176
ErhI CCWWGG 2 cut(s) 39, 82
FaeI CATG 2 cut(s) 174, 260
FaiI YATR 7 cut(s) 59, 134, 136, 172, 189, 258, 310
FatI CATG 2 cut(s) 170, 256
Fnu4HI GCNGC 1 cut(s) 28
FokI GGATG 1 cut(s) 56
Fsp4HI GCNGC 1 cut(s) 28
FspBI CTAG 3 cut(s) 83, 209, 282
GluI GCNGC 1 cut(s) 28
HgaI GACGC 1 cut(s) 156
Hin1I GRCGYC 1 cut(s) 167
Hin1II CATG 2 cut(s) 174, 260
HinfI GANTC 1 cut(s) 4
Hpy166II GTNNAC 1 cut(s) 218
Hpy188III TCNNGA 1 cut(s) 95
Hpy8I GTNNAC 1 cut(s) 218
HpyAV CCTTC 1 cut(s) 218
HpyCH4V TGCA 3 cut(s) 89, 174, 260
HpyF10VI GCNNNNNNNGC 2 cut(s) 24, 257
HpyF3I CTNAG 3 cut(s) 31, 76, 239
Hsp92I GRCGYC 1 cut(s) 167
Hsp92II CATG 2 cut(s) 174, 260
LpnPI CCDG 3 cut(s) 108, 280, 326
Lsp1109I GCAGC 1 cut(s) 39
LweI GCATC 2 cut(s) 25, 91
MaeI CTAG 3 cut(s) 83, 209, 282
MaeIII GTNAC 1 cut(s) 115
MboII GAAGA 3 cut(s) 110, 173, 278
MluCI AATT 5 cut(s) 234, 246, 261, 290, 321
MnlI CCTC 4 cut(s) 29, 157, 263, 269
Mph1103I ATGCAT 1 cut(s) 176
MwoI GCNNNNNNNGC 2 cut(s) 24, 257
NlaIII CATG 2 cut(s) 174, 260
NsiI ATGCAT 1 cut(s) 176
NspI RCATGY 1 cut(s) 260
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 1 cut(s) 29
SatI GCNGC 1 cut(s) 28
SetI ASST 7 cut(s) 32, 84, 88, 124, 214, 280, 309
SfaNI GCATC 2 cut(s) 25, 91
Sse9I AATT 5 cut(s) 234, 246, 261, 290, 321
SspMI CTAG 3 cut(s) 83, 209, 282
StyI CCWWGG 2 cut(s) 39, 82
TasI AATT 5 cut(s) 234, 246, 261, 290, 321
TfiI GAWTC 1 cut(s) 4
TscAI CASTG 1 cut(s) 247
TseI GCWGC 1 cut(s) 27
TspDTI ATGAA 4 cut(s) 17, 63, 174, 204
TspGWI ACGGA 1 cut(s) 244
TspRI CASTG 1 cut(s) 247
XapI RAATTY 2 cut(s) 234, 321
XceI RCATGY 1 cut(s) 260
XmaJI CCTAGG 1 cut(s) 82
XspI CTAG 3 cut(s) 83, 209, 282
Zsp2I ATGCAT 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.