RLG00000023014

TMV resistance protein N-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
N/A
Physical Location & Seq
Reverse (-)
16683067 .. 16685303
2237 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023014

Sequence Viewer

Length: 465 bp
ATGGTGCCTGAACGAACTCGCAAGGATCATACAACATCACAGAGCTTATGGACACCAGGTGTGCAAAAGCTGAATAGATGGCTGAAAGATGGATCAAATGATGTTGATGTGGCTGTGATATGTGGCATTGGTGGAATTGGAAAGACCACAGTTGCCCGAGTTGCTTATGACCTAAACTTTTACAGATTTCAAGGTTTCCAGGAGATTTCAGGACTTGCGGCACAATTATCCGGAGGGCTTCCACTAGCACTTAATGTTTTGACAGCATGCCTGTCTAGAAAAAGTGAAGATGTATGGCAAAGAAGATTACAGAAACGCAATCCTGCTCGAGAGGGCGGAATCCAAAATATTCAAGTTAAGATCAGCGGTGCCCAATGCATAGCCAAGATATTTCTTGTTTTCTCTTTCTGCTTCCTCTATTCTACTCTTAAGGTAGTATACTCAATCAATGGAAAACTGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

155

Amino Acids

17.08

Weight (kDa)

9.81

Isoelectric Point (pI)

38.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 4, 368
AccI GTMKAC 1 cut(s) 438
AccIII TCCGGA 1 cut(s) 230
AciI CCGC 3 cut(s) 218, 336, 366
AclWI GGATC 2 cut(s) 33, 100
AdeI CACNNNGTG 1 cut(s) 59
AflII CTTAAG 1 cut(s) 428
AgsI TTSAA 2 cut(s) 191, 353
AjnI CCWGG 2 cut(s) 55, 198
AluBI AGCT 2 cut(s) 45, 70
AluI AGCT 2 cut(s) 45, 70
AlwI GGATC 2 cut(s) 33, 100
Ama87I CYCGRG 2 cut(s) 156, 327
Aor13HI TCCGGA 1 cut(s) 230
AvaI CYCGRG 2 cut(s) 156, 327
BaeGI GKGCMC 1 cut(s) 373
BanI GGYRCC 2 cut(s) 4, 368
BccI CCATC 2 cut(s) 72, 83
BciT130I CCWGG 2 cut(s) 57, 200
BfaI CTAG 2 cut(s) 245, 276
BfrI CTTAAG 1 cut(s) 428
BisI GCNGC 1 cut(s) 219
BlsI GCNGC 1 cut(s) 220
Bme1390I CCNGG 2 cut(s) 57, 200
BmeT110I CYCGRG 2 cut(s) 156, 327
BmiI GGNNCC 2 cut(s) 6, 370
BmrFI CCNGG 2 cut(s) 57, 200
BsaWI WCCGGW 1 cut(s) 230
BseAI TCCGGA 1 cut(s) 230
BseBI CCWGG 2 cut(s) 57, 200
BseSI GKGCMC 1 cut(s) 373
BshNI GGYRCC 2 cut(s) 4, 368
BsiHKCI CYCGRG 2 cut(s) 156, 327
BsiSI CCGG 1 cut(s) 231
BsoBI CYCGRG 2 cut(s) 156, 327
Bsp1286I GDGCHC 1 cut(s) 373
Bsp13I TCCGGA 1 cut(s) 230
Bsp143I GATC 3 cut(s) 25, 92, 360
BspACI CCGC 3 cut(s) 218, 336, 366
BspEI TCCGGA 1 cut(s) 230
BspLI GGNNCC 2 cut(s) 6, 370
BspPI GGATC 2 cut(s) 33, 100
BspT107I GGYRCC 2 cut(s) 4, 368
BspTI CTTAAG 1 cut(s) 428
BssMI GATC 3 cut(s) 25, 92, 360
BssNAI GTATAC 1 cut(s) 439
Bst1107I GTATAC 1 cut(s) 439
Bst2UI CCWGG 2 cut(s) 57, 200
Bst4CI ACNGT 1 cut(s) 151
BstAFI CTTAAG 1 cut(s) 428
BstC8I GCNNGC 1 cut(s) 268
BstKTI GATC 3 cut(s) 28, 95, 363
BstMBI GATC 3 cut(s) 25, 92, 360
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstNI CCWGG 2 cut(s) 57, 200
BstNSI RCATGY 1 cut(s) 270
BstSCI CCNGG 2 cut(s) 55, 198
BstSLI GKGCMC 1 cut(s) 373
BstZ17I GTATAC 1 cut(s) 439
Cac8I GCNNGC 1 cut(s) 268
CsiI ACCWGGT 1 cut(s) 55
CviAII CATG 1 cut(s) 267
CviJI RGCY 6 cut(s) 45, 70, 82, 113, 238, 383
CviKI_1 RGCY 6 cut(s) 45, 70, 82, 113, 238, 383
DpnI GATC 3 cut(s) 27, 94, 362
DpnII GATC 3 cut(s) 25, 92, 360
DraIII CACNNNGTG 1 cut(s) 59
EciI GGCGGA 1 cut(s) 351
Eco88I CYCGRG 2 cut(s) 156, 327
EcoRII CCWGG 2 cut(s) 55, 198
EcoT22I ATGCAT 1 cut(s) 380
FaeI CATG 1 cut(s) 270
FaiI YATR 8 cut(s) 30, 49, 121, 168, 268, 295, 380, 439
FatI CATG 1 cut(s) 266
FblI GTMKAC 1 cut(s) 438
Fnu4HI GCNGC 1 cut(s) 219
Fsp4HI GCNGC 1 cut(s) 219
FspBI CTAG 2 cut(s) 245, 276
GluI GCNGC 1 cut(s) 219
HapII CCGG 1 cut(s) 231
Hin1II CATG 1 cut(s) 270
HinfI GANTC 1 cut(s) 339
HpaII CCGG 1 cut(s) 231
Hpy166II GTNNAC 1 cut(s) 439
Hpy188III TCNNGA 4 cut(s) 210, 231, 276, 329
Hpy8I GTNNAC 1 cut(s) 439
HpyCH4III ACNGT 1 cut(s) 151
HpyCH4V TGCA 2 cut(s) 64, 378
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
Hsp92II CATG 1 cut(s) 270
Kpn2I TCCGGA 1 cut(s) 230
Kzo9I GATC 3 cut(s) 25, 92, 360
LpnPI CCDG 9 cut(s) 21, 42, 69, 185, 195, 212, 244, 284, 336
MabI ACCWGGT 1 cut(s) 55
MaeI CTAG 2 cut(s) 245, 276
MalI GATC 3 cut(s) 27, 94, 362
MboI GATC 3 cut(s) 25, 92, 360
MboII GAAGA 2 cut(s) 299, 315
MhlI GDGCHC 1 cut(s) 373
MluCI AATT 2 cut(s) 135, 224
MnlI CCTC 3 cut(s) 227, 325, 425
Mph1103I ATGCAT 1 cut(s) 380
MroI TCCGGA 1 cut(s) 230
MseI TTAA 4 cut(s) 252, 357, 429, 463
MspA1I CMGCKG 1 cut(s) 366
MspCI CTTAAG 1 cut(s) 428
MspI CCGG 1 cut(s) 231
MspR9I CCNGG 2 cut(s) 57, 200
MvaI CCWGG 2 cut(s) 57, 200
MwoI GCNNNNNNNGC 1 cut(s) 161
NdeII GATC 3 cut(s) 25, 92, 360
NlaIII CATG 1 cut(s) 270
NlaIV GGNNCC 2 cut(s) 6, 370
NsiI ATGCAT 1 cut(s) 380
NspI RCATGY 1 cut(s) 270
PaeI GCATGC 1 cut(s) 270
PaeR7I CTCGAG 1 cut(s) 327
PfeI GAWTC 1 cut(s) 339
PfoI TCCNGGA 1 cut(s) 198
PkrI GCNGC 1 cut(s) 220
Psp6I CCWGG 2 cut(s) 55, 198
PspGI CCWGG 2 cut(s) 55, 198
PspN4I GGNNCC 2 cut(s) 6, 370
SaqAI TTAA 4 cut(s) 252, 357, 429, 463
SatI GCNGC 1 cut(s) 219
Sau3AI GATC 3 cut(s) 25, 92, 360
ScrFI CCNGG 2 cut(s) 57, 200
SduI GDGCHC 1 cut(s) 373
SetI ASST 6 cut(s) 47, 61, 72, 174, 196, 435
SexAI ACCWGGT 1 cut(s) 55
Sfr274I CTCGAG 1 cut(s) 327
SlaI CTCGAG 1 cut(s) 327
SmlI CTYRAG 2 cut(s) 327, 428
SmoI CTYRAG 2 cut(s) 327, 428
SphI GCATGC 1 cut(s) 270
Sse9I AATT 2 cut(s) 135, 224
SsiI CCGC 3 cut(s) 218, 336, 366
SspI AATATT 1 cut(s) 349
SspMI CTAG 2 cut(s) 245, 276
StyD4I CCNGG 2 cut(s) 55, 198
TaaI ACNGT 1 cut(s) 151
TaqI TCGA 1 cut(s) 328
TasI AATT 2 cut(s) 135, 224
TauI GCSGC 1 cut(s) 221
TfiI GAWTC 1 cut(s) 339
Tru1I TTAA 4 cut(s) 252, 357, 429, 463
Tru9I TTAA 4 cut(s) 252, 357, 429, 463
Vha464I CTTAAG 1 cut(s) 428
XbaI TCTAGA 1 cut(s) 275
XceI RCATGY 1 cut(s) 270
XhoI CTCGAG 1 cut(s) 327
XmiI GTMKAC 1 cut(s) 438
XspI CTAG 2 cut(s) 245, 276
Zsp2I ATGCAT 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.