RLG00000024788
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
N/A
Physical Location & Seq
Reverse (-)
39137825 .. 39138712
888 bp
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UTR
Exon/CDS
Intron
RLM00000024788

Sequence Viewer

Length: 888 bp
ATGACCTTGAACTTGAGCTCATATCAGTTAACCGACTCACTCTCTCCTCATATAGGAAACCTCACTTTCCTTTCTGGCCTTGACCTTGAACTCAACAATTTCCACAGTAGTCTCCCACAAGAAATTGGCCATTTATTCAGGCTCAAATACCTTAACCTCTCCAACAATTCATTTTCTGGGGAAATCCCACTAAATCTCTCCAATTGTTCTAGTCTAATTTGGCTTCGTTTAGGCTTCAACAAGTTGACTGGGAAAATCCCATTTGAATTAGGCTCATTGCAAAAGCTAGAGAGAGTTCAGCTTCACTACAACAGCTTTAGTGGACCGCTTCCAAGTTCTGTAGGCAACCTTTCCTCAGTTAGATCTCTGTCTCTGGCAGTTAACAACTTGGAGGGAAAGATACCGGAGTCACTGGGCTGCTTGAAGAATTTGGAATTCCTTGGATTTGGGGTTAATCAATTTTCTGGTATGGTCCCATCCTCAGTTTACAACCTTTCTTCTCTTACAAGGTTTAGTTTACCATACAATCAACTAGAGGGGAACTTGCCTTCTGACTTGGGTTTCACTCTTCCTAACTTGCTAGTCTTAAATTTGGGTCACAATCTCGACTTAAATGGTGACTTGAGGATGCTTAGTGTTCTACAAAAATTGAACATTGCCATTGATGTGGCATCAGCTCTGGATTATCTTCATCAACATTGCGAAGATCAGATCGTTCACTGTGATCTGAAGCCAAGCAATATCCTACTCGACAATAATATGACTGCACATGTGGGTGATTTTGGGTTGGCCAGGTTCATTCCAGAAGCTTCAAGTAGATCTCCTATCAATCAAACCAGCTCAGTAGGACTGAAGGGAACTGTTGGCTGCGCTGCACCAGGTATATAG

Protein Analysis

296

Amino Acids

32.08

Weight (kDa)

5.96

Isoelectric Point (pI)

39.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 4 - 103 5.6e-08 Leucine-rich repeat region
PK_Tyr_Ser-Thr PF07714 208 - 271 5.1e-11 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 218 - 273 6.5e-13 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 326
AcoI YGGCCR 2 cut(s) 127, 789
AcsI RAATTY 3 cut(s) 427, 434, 589
AcuI CTGAAG 2 cut(s) 749, 872
AfiI CCNNNNNNNGG 1 cut(s) 53
AflIII ACRYGT 1 cut(s) 769
AgsI TTSAA 7 cut(s) 10, 89, 238, 266, 424, 652, 813
AjnI CCWGG 2 cut(s) 791, 877
AluBI AGCT 7 cut(s) 18, 286, 301, 315, 677, 809, 840
AluI AGCT 7 cut(s) 18, 286, 301, 315, 677, 809, 840
Alw21I GWGCWC 1 cut(s) 20
Alw26I GTCTC 2 cut(s) 116, 375
AoxI GGCC 3 cut(s) 76, 127, 789
ApeKI GCWGC 3 cut(s) 417, 867, 872
ApoI RAATTY 3 cut(s) 427, 434, 589
AspLEI GCGC 1 cut(s) 872
AspS9I GGNCC 2 cut(s) 323, 472
AsuHPI GGTGA 2 cut(s) 629, 788
AvaII GGWCC 2 cut(s) 323, 472
BaeI ACNNNNGTAYC 2 cut(s) 392, 425
BalI TGGCCA 2 cut(s) 129, 791
BanII GRGCYC 1 cut(s) 20
Bbv12I GWGCWC 1 cut(s) 20
BbvI GCAGC 3 cut(s) 404, 854, 859
BccI CCATC 1 cut(s) 484
BciT130I CCWGG 2 cut(s) 793, 879
BcoDI GTCTC 2 cut(s) 116, 375
BfaI CTAG 4 cut(s) 210, 287, 533, 581
BfmI CTRYAG 1 cut(s) 339
BglII AGATCT 2 cut(s) 362, 818
BisI GCNGC 3 cut(s) 418, 868, 873
BlsI GCNGC 3 cut(s) 419, 869, 874
Bme1390I CCNGG 2 cut(s) 793, 879
Bme18I GGWCC 2 cut(s) 323, 472
BmgT120I GGNCC 2 cut(s) 323, 472
BmiI GGNNCC 1 cut(s) 474
BmrFI CCNGG 2 cut(s) 793, 879
BmrI ACTGGG 2 cut(s) 258, 422
BmsI GCATC 2 cut(s) 618, 680
BmuI ACTGGG 2 cut(s) 258, 422
BpuEI CTTGAG 2 cut(s) 34, 643
BsaJI CCNNGG 1 cut(s) 439
BsaWI WCCGGW 1 cut(s) 403
Bsc4I CCNNNNNNNGG 1 cut(s) 53
Bse1I ACTGG 2 cut(s) 253, 417
Bse3DI GCAATG 3 cut(s) 275, 654, 697
BseBI CCWGG 2 cut(s) 793, 879
BseDI CCNNGG 1 cut(s) 439
BseGI GGATG 2 cut(s) 476, 633
BseLI CCNNNNNNNGG 1 cut(s) 53
BseMI GCAATG 3 cut(s) 275, 654, 697
BseMII CTCAG 3 cut(s) 369, 495, 855
BseNI ACTGG 2 cut(s) 253, 417
BseRI GAGGAG 1 cut(s) 36
BseXI GCAGC 3 cut(s) 404, 854, 859
BsgI GTGCAG 2 cut(s) 750, 858
BshFI GGCC 3 cut(s) 78, 129, 791
BsiHKAI GWGCWC 1 cut(s) 20
BsiSI CCGG 1 cut(s) 404
BslFI GGGAC 1 cut(s) 458
BslI CCNNNNNNNGG 1 cut(s) 53
BsmAI GTCTC 2 cut(s) 116, 375
BsmFI GGGAC 1 cut(s) 458
BsnI GGCC 3 cut(s) 78, 129, 791
Bsp1286I GDGCHC 1 cut(s) 20
Bsp143I GATC 5 cut(s) 362, 706, 711, 724, 818
BspACI CCGC 1 cut(s) 326
BspANI GGCC 3 cut(s) 78, 129, 791
BspCNI CTCAG 3 cut(s) 368, 494, 854
BspLI GGNNCC 1 cut(s) 474
BsrDI GCAATG 3 cut(s) 275, 654, 697
BsrI ACTGG 2 cut(s) 253, 417
BssECI CCNNGG 1 cut(s) 439
BssMI GATC 5 cut(s) 362, 706, 711, 724, 818
BssT1I CCWWGG 1 cut(s) 439
Bst2UI CCWGG 2 cut(s) 793, 879
Bst4CI ACNGT 3 cut(s) 107, 722, 862
Bst6I CTCTTC 1 cut(s) 573
BstDEI CTNAG 4 cut(s) 355, 481, 632, 841
BstENI CCTNNNNNAGG 1 cut(s) 51
BstF5I GGATG 2 cut(s) 476, 633
BstHHI GCGC 1 cut(s) 872
BstKTI GATC 5 cut(s) 365, 709, 714, 727, 821
BstMAI GTCTC 2 cut(s) 116, 375
BstMBI GATC 5 cut(s) 362, 706, 711, 724, 818
BstNI CCWGG 2 cut(s) 793, 879
BstNSI RCATGY 1 cut(s) 773
BstSCI CCNGG 2 cut(s) 791, 877
BstSFI CTRYAG 1 cut(s) 339
BstV1I GCAGC 3 cut(s) 404, 854, 859
BstX2I RGATCY 2 cut(s) 362, 818
BstXI CCANNNNNNTGG 1 cut(s) 667
BstYI RGATCY 2 cut(s) 362, 818
BsuRI GGCC 3 cut(s) 78, 129, 791
BtsCI GGATG 2 cut(s) 476, 633
BtsIMutI CAGTG 2 cut(s) 410, 718
CfoI GCGC 1 cut(s) 872
Cfr13I GGNCC 2 cut(s) 323, 472
CsiI ACCWGGT 1 cut(s) 877
CviAII CATG 1 cut(s) 770
DdeI CTNAG 4 cut(s) 355, 481, 632, 841
DpnI GATC 5 cut(s) 364, 708, 713, 726, 820
DpnII GATC 5 cut(s) 362, 706, 711, 724, 818
EaeI YGGCCR 2 cut(s) 127, 789
Eam1104I CTCTTC 1 cut(s) 573
EarI CTCTTC 1 cut(s) 573
Ecl136II GAGCTC 1 cut(s) 18
Eco130I CCWWGG 1 cut(s) 439
Eco24I GRGCYC 1 cut(s) 20
Eco47I GGWCC 2 cut(s) 323, 472
Eco53kI GAGCTC 1 cut(s) 18
Eco57I CTGAAG 2 cut(s) 749, 872
EcoICRI GAGCTC 1 cut(s) 18
EcoNI CCTNNNNNAGG 1 cut(s) 51
EcoRI GAATTC 1 cut(s) 434
EcoRII CCWGG 2 cut(s) 791, 877
EcoT14I CCWWGG 1 cut(s) 439
EcoT38I GRGCYC 1 cut(s) 20
ErhI CCWWGG 1 cut(s) 439
FaeI CATG 1 cut(s) 773
FaiI YATR 9 cut(s) 22, 51, 53, 470, 523, 761, 771, 884, 886
FaqI GGGAC 1 cut(s) 458
FatI CATG 1 cut(s) 769
Fnu4HI GCNGC 3 cut(s) 418, 868, 873
FokI GGATG 2 cut(s) 463, 640
FriOI GRGCYC 1 cut(s) 20
Fsp4HI GCNGC 3 cut(s) 418, 868, 873
FspBI CTAG 4 cut(s) 210, 287, 533, 581
GlaI GCGC 1 cut(s) 871
GluI GCNGC 3 cut(s) 418, 868, 873
HaeIII GGCC 3 cut(s) 78, 129, 791
HapII CCGG 1 cut(s) 404
HhaI GCGC 1 cut(s) 872
Hin1II CATG 1 cut(s) 773
Hin6I GCGC 1 cut(s) 870
HinP1I GCGC 1 cut(s) 870
HincII GTYRAC 3 cut(s) 30, 246, 382
HindII GTYRAC 3 cut(s) 30, 246, 382
HindIII AAGCTT 1 cut(s) 807
HinfI GANTC 2 cut(s) 35, 407
HpaI GTTAAC 2 cut(s) 30, 382
HpaII CCGG 1 cut(s) 404
HphI GGTGA 2 cut(s) 629, 788
Hpy166II GTNNAC 7 cut(s) 30, 246, 323, 382, 487, 518, 718
Hpy188I TCNGA 3 cut(s) 553, 711, 729
Hpy188III TCNNGA 3 cut(s) 605, 680, 803
Hpy8I GTNNAC 7 cut(s) 30, 246, 323, 382, 487, 518, 718
HpyAV CCTTC 2 cut(s) 558, 847
HpyCH4III ACNGT 3 cut(s) 107, 722, 862
HpyCH4V TGCA 3 cut(s) 280, 767, 875
HpyF3I CTNAG 4 cut(s) 355, 481, 632, 841
Hsp92II CATG 1 cut(s) 773
HspAI GCGC 1 cut(s) 870
KspAI GTTAAC 2 cut(s) 30, 382
Kzo9I GATC 5 cut(s) 362, 706, 711, 724, 818
Lsp1109I GCAGC 3 cut(s) 404, 854, 859
LweI GCATC 2 cut(s) 618, 680
MabI ACCWGGT 1 cut(s) 877
MaeI CTAG 4 cut(s) 210, 287, 533, 581
MaeIII GTNAC 3 cut(s) 408, 596, 617
MalI GATC 5 cut(s) 364, 708, 713, 726, 820
MboI GATC 5 cut(s) 362, 706, 711, 724, 818
MboII GAAGA 5 cut(s) 436, 489, 560, 680, 716
MfeI CAATTG 1 cut(s) 202
MflI RGATCY 2 cut(s) 362, 818
MhlI GDGCHC 1 cut(s) 20
MlsI TGGCCA 2 cut(s) 129, 791
MluNI TGGCCA 2 cut(s) 129, 791
MlyI GAGTC 2 cut(s) 29, 416
MmeI TCCRAC 1 cut(s) 186
MnlI CCTC 8 cut(s) 57, 71, 167, 364, 385, 490, 529, 618
Mox20I TGGCCA 2 cut(s) 129, 791
MscI TGGCCA 2 cut(s) 129, 791
MseI TTAA 6 cut(s) 29, 153, 381, 453, 587, 611
MslI CAYNNNNRTG 2 cut(s) 665, 774
Msp20I TGGCCA 2 cut(s) 129, 791
MspI CCGG 1 cut(s) 404
MspR9I CCNGG 2 cut(s) 793, 879
MunI CAATTG 1 cut(s) 202
MvaI CCWGG 2 cut(s) 793, 879
NdeII GATC 5 cut(s) 362, 706, 711, 724, 818
NlaIII CATG 1 cut(s) 773
NlaIV GGNNCC 1 cut(s) 474
NmuCI GTSAC 3 cut(s) 408, 596, 617
NspI RCATGY 1 cut(s) 773
PciI ACATGT 1 cut(s) 769
PkrI GCNGC 3 cut(s) 419, 869, 874
PleI GAGTC 2 cut(s) 29, 415
PpsI GAGTC 2 cut(s) 29, 415
PscI ACATGT 1 cut(s) 769
Psp124BI GAGCTC 1 cut(s) 20
Psp6I CCWGG 2 cut(s) 791, 877
PspGI CCWGG 2 cut(s) 791, 877
PspN4I GGNNCC 1 cut(s) 474
PspPI GGNCC 2 cut(s) 323, 472
PsuI RGATCY 2 cut(s) 362, 818
RseI CAYNNNNRTG 2 cut(s) 665, 774
SacI GAGCTC 1 cut(s) 20
SaqAI TTAA 6 cut(s) 29, 153, 381, 453, 587, 611
SatI GCNGC 3 cut(s) 418, 868, 873
Sau3AI GATC 5 cut(s) 362, 706, 711, 724, 818
Sau96I GGNCC 2 cut(s) 323, 472
SchI GAGTC 2 cut(s) 29, 416
ScrFI CCNGG 2 cut(s) 793, 879
SduI GDGCHC 1 cut(s) 20
SexAI ACCWGGT 1 cut(s) 877
SfaNI GCATC 2 cut(s) 618, 680
SfcI CTRYAG 1 cut(s) 339
SinI GGWCC 2 cut(s) 323, 472
SmiMI CAYNNNNRTG 2 cut(s) 665, 774
SmlI CTYRAG 2 cut(s) 13, 622
SmoI CTYRAG 2 cut(s) 13, 622
SsiI CCGC 1 cut(s) 326
SspMI CTAG 4 cut(s) 210, 287, 533, 581
SstI GAGCTC 1 cut(s) 20
StyD4I CCNGG 2 cut(s) 791, 877
StyI CCWWGG 1 cut(s) 439
TaaI ACNGT 3 cut(s) 107, 722, 862
TaqI TCGA 2 cut(s) 606, 750
Tru1I TTAA 6 cut(s) 29, 153, 381, 453, 587, 611
Tru9I TTAA 6 cut(s) 29, 153, 381, 453, 587, 611
TscAI CASTG 2 cut(s) 417, 725
TseFI GTSAC 3 cut(s) 408, 596, 617
TseI GCWGC 3 cut(s) 417, 867, 872
Tsp45I GTSAC 3 cut(s) 408, 596, 617
TspDTI ATGAA 3 cut(s) 159, 680, 787
TspRI CASTG 2 cut(s) 417, 725
VpaK11BI GGWCC 2 cut(s) 323, 472
XagI CCTNNNNNAGG 1 cut(s) 51
XapI RAATTY 3 cut(s) 427, 434, 589
XceI RCATGY 1 cut(s) 773
XspI CTAG 4 cut(s) 210, 287, 533, 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.