Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

45211643 .. 45212619

Gene Structure 977 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025348

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGAGCCCAAGGCTGCGGCCATTGCCTATGGTCTTGACAAGAATAAGGAGGAGAAGAACATATATACTGGTTTATGACCTTGGCGGTGGTACATTTGATGTTAGCATCTTGACCATTGATGATGGTGTGATCGAGGTGATCTCTACGAGTGGAGACACTCATTTGGGAGGAGAGGATTTCAACCACAGAGTAATGGAGTATCTTATTAAGTTGATCAAGAAGCAGACAACAGAAGCATTAGCAAGGACAACAAGGCTATCTGGAAACTATATATTCACAAGGAATGCGAAAGGGCCAAGAGAGCCTTGTATTTCCCGCACCAGTTCTCTGGATTTCTCAGAATCCTTGACAAGGGAGAGTTTTGGGGAATTGAACATGGACTTGTTCAACAAGACCACGGGGACAGTGGAAAAGACTCTGCAAGATACAGGATTGAAGAAAAAGGATATTCATGAGATTGTGCTTGTTGGAGGGAGCACTAAAATTCCGAAGGGTTTGAATGCGACAGATCAGAACCAATTGCGTATGCCACAAGGTTTTGATTGCAAGGTTGTGGGAATGCGTATGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005788 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0016592 GO:0022414 GO:0030154 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0070013 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04918 ko05020 map03060 map04141 map04918 map05020

Pfam Domains

Protein Families

HSP70

Protein Analysis

191

Amino Acids

21.31

Weight (kDa)

9.45

Isoelectric Point (pI)

45.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	20 - 164	7.3e-39	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	16, 84, 316
AcoI	YGGCCR	1 cut(s)	17
AcsI	RAATTY	1 cut(s)	483
AfaI	GTAC	1 cut(s)	91
AfiI	CCNNNNNNNGG	1 cut(s)	351
AgsI	TTSAA	5 cut(s)	181, 373, 388, 436, 499
Alw21I	GWGCWC	1 cut(s)	479
Alw26I	GTCTC	1 cut(s)	147
AoxI	GGCC	2 cut(s)	17, 293
ApeKI	GCWGC	1 cut(s)	13
ApoI	RAATTY	1 cut(s)	483
AspS9I	GGNCC	1 cut(s)	293
AsuHPI	GGTGA	1 cut(s)	148
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	479
BccI	CCATC	1 cut(s)	116
BclI	TGATCA	1 cut(s)	213
BcoDI	GTCTC	1 cut(s)	147
BisI	GCNGC	2 cut(s)	14, 17
BlsI	GCNGC	2 cut(s)	15, 18
BmgT120I	GGNCC	1 cut(s)	293
BmsI	GCATC	1 cut(s)	114
BplI	GAGNNNNNCTC	2 cut(s)	125, 157
BsaJI	CCNNGG	3 cut(s)	8, 79, 396
Bsc4I	CCNNNNNNNGG	1 cut(s)	351
Bse1I	ACTGG	2 cut(s)	72, 321
Bse3DI	GCAATG	1 cut(s)	20
BseDI	CCNNGG	3 cut(s)	8, 79, 396
BseLI	CCNNNNNNNGG	1 cut(s)	351
BseMI	GCAATG	1 cut(s)	20
BseMII	CTCAG	1 cut(s)	351
BseNI	ACTGG	2 cut(s)	72, 321
BseRI	GAGGAG	2 cut(s)	64, 183
BshFI	GGCC	2 cut(s)	19, 295
BsiHKAI	GWGCWC	1 cut(s)	479
BslFI	GGGAC	1 cut(s)	415
BslI	CCNNNNNNNGG	1 cut(s)	351
BsmAI	GTCTC	1 cut(s)	147
BsmFI	GGGAC	1 cut(s)	415
BsmI	GAATGC	3 cut(s)	289, 505, 564
BsnI	GGCC	2 cut(s)	19, 295
Bsp1286I	GDGCHC	2 cut(s)	8, 479
Bsp143I	GATC	4 cut(s)	129, 138, 213, 508
BspACI	CCGC	3 cut(s)	16, 84, 316
BspANI	GGCC	2 cut(s)	19, 295
BspCNI	CTCAG	1 cut(s)	350
BspHI	TCATGA	1 cut(s)	451
BsrDI	GCAATG	1 cut(s)	20
BsrI	ACTGG	2 cut(s)	72, 321
BssECI	CCNNGG	3 cut(s)	8, 79, 396
BssMI	GATC	4 cut(s)	129, 138, 213, 508
BssT1I	CCWWGG	2 cut(s)	8, 79
Bst4CI	ACNGT	1 cut(s)	406
BstDEI	CTNAG	1 cut(s)	337
BstDSI	CCRYGG	1 cut(s)	396
BstENI	CCTNNNNNAGG	1 cut(s)	349
BstKTI	GATC	4 cut(s)	132, 141, 216, 511
BstMAI	GTCTC	1 cut(s)	147
BstMBI	GATC	4 cut(s)	129, 138, 213, 508
BstMWI	GCNNNNNNNGC	2 cut(s)	22, 301
BstXI	CCANNNNNNTGG	1 cut(s)	328
BsuRI	GGCC	2 cut(s)	19, 295
BtgI	CCRYGG	1 cut(s)	396
BtsIMutI	CAGTG	1 cut(s)	411
CciI	TCATGA	1 cut(s)	451
Cfr13I	GGNCC	1 cut(s)	293
Csp6I	GTAC	1 cut(s)	90
CviAII	CATG	3 cut(s)	376, 452, 570
CviJI	RGCY	6 cut(s)	6, 13, 19, 256, 295, 304
CviKI_1	RGCY	6 cut(s)	6, 13, 19, 256, 295, 304
CviQI	GTAC	1 cut(s)	90
DdeI	CTNAG	1 cut(s)	337
DpnI	GATC	4 cut(s)	131, 140, 215, 510
DpnII	GATC	4 cut(s)	129, 138, 213, 508
EaeI	YGGCCR	1 cut(s)	17
Eco130I	CCWWGG	2 cut(s)	8, 79
Eco24I	GRGCYC	1 cut(s)	8
EcoNI	CCTNNNNNAGG	1 cut(s)	349
EcoT14I	CCWWGG	2 cut(s)	8, 79
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	2 cut(s)	8, 79
FaeI	CATG	3 cut(s)	379, 455, 573
FalI	AAGNNNNNCTT	2 cut(s)	289, 321
FaqI	GGGAC	1 cut(s)	415
FatI	CATG	3 cut(s)	375, 451, 569
FauI	CCCGC	1 cut(s)	323
FbaI	TGATCA	1 cut(s)	213
Fnu4HI	GCNGC	2 cut(s)	14, 17
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	2 cut(s)	14, 17
GluI	GCNGC	2 cut(s)	14, 17
HaeIII	GGCC	2 cut(s)	19, 295
Hin1II	CATG	3 cut(s)	379, 455, 573
HinfI	GANTC	2 cut(s)	341, 415
HphI	GGTGA	1 cut(s)	148
Hpy188I	TCNGA	3 cut(s)	340, 489, 513
Hpy188III	TCNNGA	6 cut(s)	34, 109, 217, 261, 329, 452
HpyAV	CCTTC	1 cut(s)	484
HpyCH4III	ACNGT	1 cut(s)	406
HpyCH4V	TGCA	2 cut(s)	421, 546
HpyF10VI	GCNNNNNNNGC	2 cut(s)	22, 301
HpyF3I	CTNAG	1 cut(s)	337
Hsp92II	CATG	3 cut(s)	379, 455, 573
Ksp22I	TGATCA	1 cut(s)	213
Kzo9I	GATC	4 cut(s)	129, 138, 213, 508
LmnI	GCTCC	1 cut(s)	474
LpnPI	CCDG	5 cut(s)	53, 246, 314, 334, 414
LweI	GCATC	1 cut(s)	114
MalI	GATC	4 cut(s)	131, 140, 215, 510
MboI	GATC	4 cut(s)	129, 138, 213, 508
MboII	GAAGA	2 cut(s)	66, 448
MfeI	CAATTG	1 cut(s)	518
MhlI	GDGCHC	2 cut(s)	8, 479
MluCI	AATT	3 cut(s)	368, 483, 518
MlyI	GAGTC	1 cut(s)	409
MmeI	TCCRAC	1 cut(s)	448
MnlI	CCTC	5 cut(s)	42, 127, 161, 166, 464
MseI	TTAA	1 cut(s)	207
MunI	CAATTG	1 cut(s)	518
Mva1269I	GAATGC	3 cut(s)	289, 505, 564
MwoI	GCNNNNNNNGC	2 cut(s)	22, 301
NdeII	GATC	4 cut(s)	129, 138, 213, 508
NlaIII	CATG	3 cut(s)	379, 455, 573
PagI	TCATGA	1 cut(s)	451
PctI	GAATGC	3 cut(s)	289, 505, 564
PfeI	GAWTC	1 cut(s)	341
PkrI	GCNGC	2 cut(s)	15, 18
PleI	GAGTC	1 cut(s)	409
PpsI	GAGTC	1 cut(s)	409
PspPI	GGNCC	1 cut(s)	293
RsaI	GTAC	1 cut(s)	91
RsaNI	GTAC	1 cut(s)	90
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	2 cut(s)	14, 17
Sau3AI	GATC	4 cut(s)	129, 138, 213, 508
Sau96I	GGNCC	1 cut(s)	293
SchI	GAGTC	1 cut(s)	409
SduI	GDGCHC	2 cut(s)	8, 479
SetI	ASST	4 cut(s)	81, 138, 538, 552
SfaNI	GCATC	1 cut(s)	114
Sse9I	AATT	3 cut(s)	368, 483, 518
SsiI	CCGC	3 cut(s)	16, 84, 316
StyI	CCWWGG	2 cut(s)	8, 79
TaaI	ACNGT	1 cut(s)	406
TaqI	TCGA	1 cut(s)	132
TasI	AATT	3 cut(s)	368, 483, 518
TauI	GCSGC	1 cut(s)	19
TfiI	GAWTC	1 cut(s)	341
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TscAI	CASTG	1 cut(s)	411
TseI	GCWGC	1 cut(s)	13
TspDTI	ATGAA	1 cut(s)	440
TspRI	CASTG	1 cut(s)	411
XagI	CCTNNNNNAGG	1 cut(s)	349
XapI	RAATTY	1 cut(s)	483
XcmI	CCANNNNNNNNNTGG	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.