Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

1826717 .. 1830767

Gene Structure 4051 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026275

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGCCACCAATGGTTTCAGCTCAGCTCAGAGAATTTGGTTGGGAAAGGAGGATATATGCAGAGGTGTATAGAGGTGGTCTGATCGAAAGAGGCTCTGTGTTGCTTCTCTACTTCATGATAGCCATTGGGACAGGTAGAGGGCTCCACTATTTGCACAAGGGCTGCCACAGGAGGATAATTCACAAGGTCATTAAGTCCACAAATATACCATTGACTGTAGATCTTGAACCACAGATATCTGATTTTGGACTAGGAAAATGGCTTCCATCACAATGGACTCATCACTCAATTGCTCCAATTGAGGGGACCTTTGGTTTCGATAACTTTGATTCCGGGAGGATACGGCGTCGTCTGAATTTCTCTGCTCACATTTTCGGCTTATTGAGGGTCGAGCTAGCTGGGGAGGTTATTTCGTTTAATGCTGACAGGAACATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

146

Amino Acids

16.59

Weight (kDa)

9.79

Isoelectric Point (pI)

58.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	32, 355
AcyI	GRCGYC	1 cut(s)	346
AfiI	CCNNNNNNNGG	1 cut(s)	302
AgsI	TTSAA	1 cut(s)	227
AluBI	AGCT	4 cut(s)	20, 25, 394, 398
AluI	AGCT	4 cut(s)	20, 25, 394, 398
ApeKI	GCWGC	1 cut(s)	162
ApoI	RAATTY	2 cut(s)	32, 355
AspS9I	GGNCC	1 cut(s)	306
AsuC2I	CCSGG	1 cut(s)	334
AsuNHI	GCTAGC	1 cut(s)	394
AvaII	GGWCC	1 cut(s)	306
BanII	GRGCYC	1 cut(s)	144
BbvI	GCAGC	1 cut(s)	149
BccI	CCATC	1 cut(s)	274
BceAI	ACGGC	1 cut(s)	359
BciVI	GTATCC	1 cut(s)	333
BcnI	CCSGG	1 cut(s)	334
BfaI	CTAG	2 cut(s)	251, 395
BfmI	CTRYAG	1 cut(s)	216
BfuI	GTATCC	1 cut(s)	333
BglII	AGATCT	1 cut(s)	220
BisI	GCNGC	1 cut(s)	163
BlpI	GCTNAGC	1 cut(s)	21
BlsI	GCNGC	1 cut(s)	164
Bme1390I	CCNGG	1 cut(s)	334
Bme18I	GGWCC	1 cut(s)	306
BmgT120I	GGNCC	1 cut(s)	306
BmiI	GGNNCC	2 cut(s)	143, 307
BmrFI	CCNGG	1 cut(s)	334
BmtI	GCTAGC	1 cut(s)	398
Bpu1102I	GCTNAGC	1 cut(s)	21
BpuMI	CCSGG	1 cut(s)	334
BsaHI	GRCGYC	1 cut(s)	346
Bsc4I	CCNNNNNNNGG	1 cut(s)	302
BseLI	CCNNNNNNNGG	1 cut(s)	302
BseMII	CTCAG	2 cut(s)	35, 40
BseXI	GCAGC	1 cut(s)	149
BseYI	CCCAGC	1 cut(s)	398
BsiSI	CCGG	1 cut(s)	333
BslFI	GGGAC	2 cut(s)	142, 319
BslI	CCNNNNNNNGG	1 cut(s)	302
BsmFI	GGGAC	2 cut(s)	142, 319
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp143I	GATC	2 cut(s)	81, 220
Bsp1720I	GCTNAGC	1 cut(s)	21
BspCNI	CTCAG	2 cut(s)	34, 39
BspHI	TCATGA	1 cut(s)	114
BspLI	GGNNCC	2 cut(s)	143, 307
BspOI	GCTAGC	1 cut(s)	398
BssMI	GATC	2 cut(s)	81, 220
BssNI	GRCGYC	1 cut(s)	346
Bst4CI	ACNGT	1 cut(s)	217
BstACI	GRCGYC	1 cut(s)	346
BstC8I	GCNNGC	1 cut(s)	396
BstDEI	CTNAG	2 cut(s)	21, 26
BstKTI	GATC	2 cut(s)	84, 223
BstMBI	GATC	2 cut(s)	81, 220
BstSCI	CCNGG	1 cut(s)	332
BstSFI	CTRYAG	1 cut(s)	216
BstV1I	GCAGC	1 cut(s)	149
BstX2I	RGATCY	1 cut(s)	220
BstXI	CCANNNNNNTGG	1 cut(s)	273
BstYI	RGATCY	1 cut(s)	220
BsuI	GTATCC	1 cut(s)	333
Cac8I	GCNNGC	1 cut(s)	396
CciI	TCATGA	1 cut(s)	114
Cfr13I	GGNCC	1 cut(s)	306
CseI	GACGC	1 cut(s)	335
CviAII	CATG	1 cut(s)	115
DdeI	CTNAG	2 cut(s)	21, 26
DpnI	GATC	2 cut(s)	83, 222
DpnII	GATC	2 cut(s)	81, 220
Eco24I	GRGCYC	1 cut(s)	144
Eco32I	GATATC	1 cut(s)	237
Eco47I	GGWCC	1 cut(s)	306
EcoO109I	RGGNCCY	1 cut(s)	306
EcoRV	GATATC	1 cut(s)	237
EcoT38I	GRGCYC	1 cut(s)	144
FaeI	CATG	1 cut(s)	118
FaiI	YATR	7 cut(s)	55, 57, 69, 116, 206, 434, 436
FaqI	GGGAC	2 cut(s)	142, 319
FatI	CATG	1 cut(s)	114
Fnu4HI	GCNGC	1 cut(s)	163
FriOI	GRGCYC	1 cut(s)	144
Fsp4HI	GCNGC	1 cut(s)	163
FspBI	CTAG	2 cut(s)	251, 395
GluI	GCNGC	1 cut(s)	163
GsaI	CCCAGC	1 cut(s)	402
HapII	CCGG	1 cut(s)	333
HgaI	GACGC	1 cut(s)	335
Hin1I	GRCGYC	1 cut(s)	346
Hin1II	CATG	1 cut(s)	118
HinfI	GANTC	2 cut(s)	277, 329
HpaII	CCGG	1 cut(s)	333
Hpy166II	GTNNAC	1 cut(s)	198
Hpy188I	TCNGA	4 cut(s)	29, 81, 241, 354
Hpy188III	TCNNGA	2 cut(s)	115, 224
Hpy8I	GTNNAC	1 cut(s)	198
Hpy99I	CGWCG	1 cut(s)	351
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4V	TGCA	2 cut(s)	59, 154
HpyF3I	CTNAG	2 cut(s)	21, 26
Hsp92I	GRCGYC	1 cut(s)	346
Hsp92II	CATG	1 cut(s)	118
Kzo9I	GATC	2 cut(s)	81, 220
LmnI	GCTCC	2 cut(s)	147, 298
LpnPI	CCDG	5 cut(s)	117, 154, 346, 384, 412
Lsp1109I	GCAGC	1 cut(s)	149
MaeI	CTAG	2 cut(s)	251, 395
MalI	GATC	2 cut(s)	83, 222
MboI	GATC	2 cut(s)	81, 220
MfeI	CAATTG	2 cut(s)	288, 297
MflI	RGATCY	1 cut(s)	220
MhlI	GDGCHC	1 cut(s)	144
MluCI	AATT	5 cut(s)	32, 177, 288, 297, 355
MlyI	GAGTC	1 cut(s)	271
MseI	TTAA	2 cut(s)	192, 417
MslI	CAYNNNNRTG	1 cut(s)	271
MspI	CCGG	1 cut(s)	333
MspR9I	CCNGG	1 cut(s)	334
MunI	CAATTG	2 cut(s)	288, 297
NciI	CCSGG	1 cut(s)	334
NdeII	GATC	2 cut(s)	81, 220
NheI	GCTAGC	1 cut(s)	394
NlaIII	CATG	1 cut(s)	118
NlaIV	GGNNCC	2 cut(s)	143, 307
PagI	TCATGA	1 cut(s)	114
PfeI	GAWTC	1 cut(s)	329
PfoI	TCCNGGA	1 cut(s)	332
PkrI	GCNGC	1 cut(s)	164
PleI	GAGTC	1 cut(s)	271
PpsI	GAGTC	1 cut(s)	271
PpuMI	RGGWCCY	1 cut(s)	306
Psp5II	RGGWCCY	1 cut(s)	306
PspFI	CCCAGC	1 cut(s)	398
PspN4I	GGNNCC	2 cut(s)	143, 307
PspPI	GGNCC	1 cut(s)	306
PspPPI	RGGWCCY	1 cut(s)	306
PsuI	RGATCY	1 cut(s)	220
RseI	CAYNNNNRTG	1 cut(s)	271
SaqAI	TTAA	2 cut(s)	192, 417
SatI	GCNGC	1 cut(s)	163
Sau3AI	GATC	2 cut(s)	81, 220
Sau96I	GGNCC	1 cut(s)	306
SchI	GAGTC	1 cut(s)	271
ScrFI	CCNGG	1 cut(s)	334
SduI	GDGCHC	1 cut(s)	144
SfcI	CTRYAG	1 cut(s)	216
SinI	GGWCC	1 cut(s)	306
SmiMI	CAYNNNNRTG	1 cut(s)	271
Sse9I	AATT	5 cut(s)	32, 177, 288, 297, 355
SspMI	CTAG	2 cut(s)	251, 395
StyD4I	CCNGG	1 cut(s)	332
TaaI	ACNGT	1 cut(s)	217
TaqI	TCGA	3 cut(s)	84, 318, 390
TasI	AATT	5 cut(s)	32, 177, 288, 297, 355
TfiI	GAWTC	1 cut(s)	329
Tru1I	TTAA	2 cut(s)	192, 417
Tru9I	TTAA	2 cut(s)	192, 417
TseI	GCWGC	1 cut(s)	162
TspDTI	ATGAA	1 cut(s)	103
VpaK11BI	GGWCC	1 cut(s)	306
XapI	RAATTY	2 cut(s)	32, 355
XspI	CTAG	2 cut(s)	251, 395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.