RLG00000026449

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
N/A
Physical Location & Seq
Forward (+)
3121111 .. 3121654
544 bp
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UTR
Exon/CDS
Intron
RLM00000026449

Sequence Viewer

Length: 492 bp
ATGTCTGAATGGACGGCACTTGCATCTCCGAGCTCAAATGGATACTATTGCTTAAAAATCCCTTTTGCTGAGTTACGAGTGGCAACAAACATCTTTGATGAAATTCTAATTTGCGGTTCCGGTGGTTTTGGAATGGTTTACAAAGCAGTCCTGAGGGCAAATACAAAGGTTGCTGTGGAGAGAGGTGTGTCTGGATCCCAGCAAGGACTGCCAGAATTCCAGACTGAAATAGTCCCAAATTCGGCACCAGCATCTTGTATCACTTGTCGGATATTGCGAGGAAAAGTCAGAAATGATACTGGACTTCCTCCTTTGTCGTGGAAGCAACGAATTGAAATATGCATTGGATCAGCAAGAGGCCTTCACTACCTTCATACAGGCTTTGCTCAAGGCATACACCATGACATCAAATCAACTAACATTTTGCTTGATGATAATTATGTGCCTAAGATGGCAGATTTTGGTCTTTTCGAGATCAGGGCCATGTCTTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

164

Amino Acids

17.85

Weight (kDa)

8.3

Isoelectric Point (pI)

53.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 104 - 158 1.9e-08 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 112 - 156 2e-07 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 244
AciI CCGC 1 cut(s) 114
AclWI GGATC 3 cut(s) 189, 202, 355
AcsI RAATTY 3 cut(s) 102, 215, 238
AfiI CCNNNNNNNGG 1 cut(s) 241
AgsI TTSAA 1 cut(s) 335
AjuI GAANNNNNNNTTGG 2 cut(s) 327, 359
AluBI AGCT 1 cut(s) 33
AluI AGCT 1 cut(s) 33
Alw21I GWGCWC 1 cut(s) 35
AlwI GGATC 3 cut(s) 189, 202, 355
AoxI GGCC 2 cut(s) 358, 480
ApoI RAATTY 3 cut(s) 102, 215, 238
AspS9I GGNCC 1 cut(s) 480
AxyI CCTNAGG 1 cut(s) 152
BamHI GGATCC 1 cut(s) 194
BanI GGYRCC 1 cut(s) 244
BanII GRGCYC 1 cut(s) 35
Bbv12I GWGCWC 1 cut(s) 35
BccI CCATC 1 cut(s) 445
BceAI ACGGC 1 cut(s) 30
BciVI GTATCC 1 cut(s) 35
BfuI GTATCC 1 cut(s) 35
BmgT120I GGNCC 1 cut(s) 480
BmiI GGNNCC 3 cut(s) 118, 196, 246
BmsI GCATC 2 cut(s) 32, 260
BpuEI CTTGAG 1 cut(s) 372
BsaWI WCCGGW 1 cut(s) 119
Bsc4I CCNNNNNNNGG 1 cut(s) 241
Bse1I ACTGG 1 cut(s) 304
Bse21I CCTNAGG 1 cut(s) 152
BseLI CCNNNNNNNGG 1 cut(s) 241
BseMII CTCAG 2 cut(s) 60, 143
BseNI ACTGG 1 cut(s) 304
BseYI CCCAGC 1 cut(s) 198
BshFI GGCC 2 cut(s) 360, 482
BshNI GGYRCC 1 cut(s) 244
BsiHKAI GWGCWC 1 cut(s) 35
BsiSI CCGG 1 cut(s) 120
BslFI GGGAC 1 cut(s) 218
BslI CCNNNNNNNGG 1 cut(s) 241
BsmFI GGGAC 1 cut(s) 218
BsnI GGCC 2 cut(s) 360, 482
Bsp1286I GDGCHC 1 cut(s) 35
Bsp143I GATC 3 cut(s) 194, 347, 474
BspACI CCGC 1 cut(s) 114
BspANI GGCC 2 cut(s) 360, 482
BspCNI CTCAG 2 cut(s) 61, 144
BspLI GGNNCC 3 cut(s) 118, 196, 246
BspPI GGATC 3 cut(s) 189, 202, 355
BspT107I GGYRCC 1 cut(s) 244
BsrI ACTGG 1 cut(s) 304
BssMI GATC 3 cut(s) 194, 347, 474
BstAPI GCANNNNNTGC 1 cut(s) 208
BstDEI CTNAG 3 cut(s) 69, 152, 447
BstKTI GATC 3 cut(s) 197, 350, 477
BstMBI GATC 3 cut(s) 194, 347, 474
BstMWI GCNNNNNNNGC 1 cut(s) 208
BstX2I RGATCY 1 cut(s) 194
BstYI RGATCY 1 cut(s) 194
Bsu36I CCTNAGG 1 cut(s) 152
BsuI GTATCC 1 cut(s) 35
BsuRI GGCC 2 cut(s) 360, 482
Cfr13I GGNCC 1 cut(s) 480
CviAII CATG 2 cut(s) 401, 484
CviJI RGCY 4 cut(s) 33, 360, 381, 482
CviKI_1 RGCY 4 cut(s) 33, 360, 381, 482
DdeI CTNAG 3 cut(s) 69, 152, 447
DpnI GATC 3 cut(s) 196, 349, 476
DpnII GATC 3 cut(s) 194, 347, 474
Ecl136II GAGCTC 1 cut(s) 33
Eco147I AGGCCT 1 cut(s) 360
Eco24I GRGCYC 1 cut(s) 35
Eco53kI GAGCTC 1 cut(s) 33
Eco81I CCTNAGG 1 cut(s) 152
EcoICRI GAGCTC 1 cut(s) 33
EcoRI GAATTC 1 cut(s) 215
EcoT22I ATGCAT 1 cut(s) 344
EcoT38I GRGCYC 1 cut(s) 35
FaeI CATG 2 cut(s) 404, 487
FaiI YATR 6 cut(s) 340, 375, 395, 402, 441, 485
FaqI GGGAC 1 cut(s) 218
FatI CATG 2 cut(s) 400, 483
FriOI GRGCYC 1 cut(s) 35
GsaI CCCAGC 1 cut(s) 202
HaeIII GGCC 2 cut(s) 360, 482
HapII CCGG 1 cut(s) 120
Hin1II CATG 2 cut(s) 404, 487
HpaII CCGG 1 cut(s) 120
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 4 cut(s) 7, 30, 270, 290
Hpy188III TCNNGA 5 cut(s) 151, 192, 220, 472, 489
Hpy8I GTNNAC 1 cut(s) 139
HpyAV CCTTC 2 cut(s) 371, 380
HpyCH4V TGCA 2 cut(s) 23, 342
HpyF10VI GCNNNNNNNGC 1 cut(s) 208
HpyF3I CTNAG 3 cut(s) 69, 152, 447
Hsp92II CATG 2 cut(s) 404, 487
Kzo9I GATC 3 cut(s) 194, 347, 474
LweI GCATC 2 cut(s) 32, 260
MaeIII GTNAC 1 cut(s) 72
MalI GATC 3 cut(s) 196, 349, 476
MboI GATC 3 cut(s) 194, 347, 474
MflI RGATCY 1 cut(s) 194
MhlI GDGCHC 1 cut(s) 35
MluCI AATT 6 cut(s) 102, 108, 215, 238, 330, 436
MmeI TCCRAC 1 cut(s) 248
MnlI CCTC 5 cut(s) 147, 176, 272, 318, 350
Mph1103I ATGCAT 1 cut(s) 344
MseI TTAA 1 cut(s) 53
MspI CCGG 1 cut(s) 120
MwoI GCNNNNNNNGC 1 cut(s) 208
NdeII GATC 3 cut(s) 194, 347, 474
NlaIII CATG 2 cut(s) 404, 487
NlaIV GGNNCC 3 cut(s) 118, 196, 246
NsiI ATGCAT 1 cut(s) 344
PceI AGGCCT 1 cut(s) 360
PcsI WCGNNNNNNNCGW 1 cut(s) 274
Psp124BI GAGCTC 1 cut(s) 35
PspFI CCCAGC 1 cut(s) 198
PspN4I GGNNCC 3 cut(s) 118, 196, 246
PspPI GGNCC 1 cut(s) 480
PsuI RGATCY 1 cut(s) 194
SacI GAGCTC 1 cut(s) 35
SaqAI TTAA 1 cut(s) 53
Sau3AI GATC 3 cut(s) 194, 347, 474
Sau96I GGNCC 1 cut(s) 480
SduI GDGCHC 1 cut(s) 35
SetI ASST 4 cut(s) 35, 171, 187, 372
SfaNI GCATC 2 cut(s) 32, 260
SmlI CTYRAG 1 cut(s) 387
SmoI CTYRAG 1 cut(s) 387
Sse9I AATT 6 cut(s) 102, 108, 215, 238, 330, 436
SseBI AGGCCT 1 cut(s) 360
SsiI CCGC 1 cut(s) 114
SstI GAGCTC 1 cut(s) 35
StuI AGGCCT 1 cut(s) 360
TaqI TCGA 1 cut(s) 471
TasI AATT 6 cut(s) 102, 108, 215, 238, 330, 436
Tru1I TTAA 1 cut(s) 53
Tru9I TTAA 1 cut(s) 53
TspDTI ATGAA 2 cut(s) 114, 362
XapI RAATTY 3 cut(s) 102, 215, 238
Zsp2I ATGCAT 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.