RLG00000026468

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
N/A
Physical Location & Seq
Reverse (-)
3203010 .. 3203743
734 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026468

Sequence Viewer

Length: 339 bp
ATGACATCTTTGGCTCAACTTCTTCCAGCTAGCCTAGCACCGGAAAGGAAAGGCAATATTCGATCCTCTGGAAAGTTGACAAGTATGAAACTGACACTCCAAACCGAGAGCTGCCTTTACCTTGTTCCCGAATTTAGTCAAATCCGTAACACGGATGCCGATACCGACCTTGAATTTTTAGCCGAAACATGTCCGCAACTTAAGATCACCGTGTTCAATTGGCGTCAGGAAGATGGTCATGATGGGGGTATTATGAGTGAAAAAGGTCTCGAGGCCTTTGGGAAATTAATGAGTGTCCTGAACTGGCTGAGGTTCGGGTTTTCGGGGGAGGAAGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

113

Amino Acids

12.44

Weight (kDa)

4.93

Isoelectric Point (pI)

54.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 194
AclWI GGATC 1 cut(s) 57
AcsI RAATTY 2 cut(s) 131, 173
AcyI GRCGYC 1 cut(s) 223
AfiI CCNNNNNNNGG 2 cut(s) 40, 151
AflII CTTAAG 1 cut(s) 200
AflIII ACRYGT 1 cut(s) 188
AgsI TTSAA 2 cut(s) 173, 217
AluBI AGCT 2 cut(s) 29, 111
AluI AGCT 2 cut(s) 29, 111
Alw26I GTCTC 1 cut(s) 272
AlwI GGATC 1 cut(s) 57
Ama87I CYCGRG 1 cut(s) 269
AoxI GGCC 1 cut(s) 273
ApeKI GCWGC 1 cut(s) 111
ApoI RAATTY 2 cut(s) 131, 173
AseI ATTAAT 1 cut(s) 287
AsuHPI GGTGA 1 cut(s) 199
AsuNHI GCTAGC 1 cut(s) 29
AvaI CYCGRG 1 cut(s) 269
BbvCI CCTCAGC 1 cut(s) 308
BbvI GCAGC 1 cut(s) 98
BccI CCATC 2 cut(s) 227, 236
BcoDI GTCTC 1 cut(s) 272
BfaI CTAG 2 cut(s) 30, 35
BfrI CTTAAG 1 cut(s) 200
BisI GCNGC 1 cut(s) 112
BlsI GCNGC 1 cut(s) 113
BmeT110I CYCGRG 1 cut(s) 269
BmsI GCATC 1 cut(s) 145
BmtI GCTAGC 1 cut(s) 33
Bpu10I CCTNAGC 1 cut(s) 308
BsaHI GRCGYC 1 cut(s) 223
BsaI GGTCTC 1 cut(s) 272
BsaWI WCCGGW 1 cut(s) 40
BsaXI ACNNNNNCTCC 3 cut(s) 81, 111, 320
Bsc4I CCNNNNNNNGG 2 cut(s) 40, 151
Bse1I ACTGG 1 cut(s) 308
BseGI GGATG 1 cut(s) 160
BseLI CCNNNNNNNGG 2 cut(s) 40, 151
BseMII CTCAG 1 cut(s) 299
BseNI ACTGG 1 cut(s) 308
BseXI GCAGC 1 cut(s) 98
BshFI GGCC 1 cut(s) 275
BsiHKCI CYCGRG 1 cut(s) 269
BsiSI CCGG 1 cut(s) 41
BslI CCNNNNNNNGG 2 cut(s) 40, 151
BsmAI GTCTC 1 cut(s) 272
BsnI GGCC 1 cut(s) 275
Bso31I GGTCTC 1 cut(s) 272
BsoBI CYCGRG 1 cut(s) 269
Bsp143I GATC 2 cut(s) 62, 204
BspACI CCGC 1 cut(s) 194
BspANI GGCC 1 cut(s) 275
BspCNI CTCAG 1 cut(s) 300
BspHI TCATGA 1 cut(s) 238
BspOI GCTAGC 1 cut(s) 33
BspPI GGATC 1 cut(s) 57
BspTI CTTAAG 1 cut(s) 200
BspTNI GGTCTC 1 cut(s) 272
BsrI ACTGG 1 cut(s) 308
BssMI GATC 2 cut(s) 62, 204
BssNI GRCGYC 1 cut(s) 223
Bst4CI ACNGT 1 cut(s) 211
BstACI GRCGYC 1 cut(s) 223
BstAFI CTTAAG 1 cut(s) 200
BstC8I GCNNGC 1 cut(s) 31
BstDEI CTNAG 1 cut(s) 308
BstF5I GGATG 1 cut(s) 160
BstKTI GATC 2 cut(s) 65, 207
BstMAI GTCTC 1 cut(s) 272
BstMBI GATC 2 cut(s) 62, 204
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstNSI RCATGY 1 cut(s) 192
BstV1I GCAGC 1 cut(s) 98
BsuRI GGCC 1 cut(s) 275
BtsCI GGATG 1 cut(s) 160
Cac8I GCNNGC 1 cut(s) 31
CciI TCATGA 1 cut(s) 238
CseI GACGC 1 cut(s) 212
CviAII CATG 2 cut(s) 189, 239
CviJI RGCY 7 cut(s) 14, 29, 33, 111, 182, 275, 307
CviKI_1 RGCY 7 cut(s) 14, 29, 33, 111, 182, 275, 307
DdeI CTNAG 1 cut(s) 308
DpnI GATC 2 cut(s) 64, 206
DpnII GATC 2 cut(s) 62, 204
Eco147I AGGCCT 1 cut(s) 275
Eco31I GGTCTC 1 cut(s) 272
Eco88I CYCGRG 1 cut(s) 269
FaeI CATG 2 cut(s) 192, 242
FaiI YATR 4 cut(s) 86, 190, 240, 254
FatI CATG 2 cut(s) 188, 238
Fnu4HI GCNGC 1 cut(s) 112
FokI GGATG 1 cut(s) 167
Fsp4HI GCNGC 1 cut(s) 112
FspBI CTAG 2 cut(s) 30, 35
GluI GCNGC 1 cut(s) 112
HaeIII GGCC 1 cut(s) 275
HapII CCGG 1 cut(s) 41
HgaI GACGC 1 cut(s) 212
Hin1I GRCGYC 1 cut(s) 223
Hin1II CATG 2 cut(s) 192, 242
HincII GTYRAC 1 cut(s) 78
HindII GTYRAC 1 cut(s) 78
HpaII CCGG 1 cut(s) 41
HphI GGTGA 1 cut(s) 199
Hpy166II GTNNAC 1 cut(s) 78
Hpy188III TCNNGA 6 cut(s) 69, 128, 227, 239, 269, 298
Hpy8I GTNNAC 1 cut(s) 78
HpyAV CCTTC 1 cut(s) 326
HpyCH4III ACNGT 1 cut(s) 211
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpyF3I CTNAG 1 cut(s) 308
Hsp92I GRCGYC 1 cut(s) 223
Hsp92II CATG 2 cut(s) 192, 242
Kzo9I GATC 2 cut(s) 62, 204
LpnPI CCDG 6 cut(s) 39, 54, 54, 212, 289, 311
Lsp1109I GCAGC 1 cut(s) 98
LweI GCATC 1 cut(s) 145
MaeI CTAG 2 cut(s) 30, 35
MaeIII GTNAC 1 cut(s) 146
MalI GATC 2 cut(s) 64, 206
MboI GATC 2 cut(s) 62, 204
MboII GAAGA 2 cut(s) 14, 242
MfeI CAATTG 1 cut(s) 217
MluCI AATT 4 cut(s) 131, 173, 217, 284
MnlI CCTC 4 cut(s) 76, 265, 303, 322
MseI TTAA 2 cut(s) 201, 287
MspCI CTTAAG 1 cut(s) 200
MspI CCGG 1 cut(s) 41
MunI CAATTG 1 cut(s) 217
MwoI GCNNNNNNNGC 1 cut(s) 35
NdeII GATC 2 cut(s) 62, 204
NheI GCTAGC 1 cut(s) 29
NlaIII CATG 2 cut(s) 192, 242
NspI RCATGY 1 cut(s) 192
PaeR7I CTCGAG 1 cut(s) 269
PagI TCATGA 1 cut(s) 238
PceI AGGCCT 1 cut(s) 275
PciI ACATGT 1 cut(s) 188
PkrI GCNGC 1 cut(s) 113
PscI ACATGT 1 cut(s) 188
PshBI ATTAAT 1 cut(s) 287
SaqAI TTAA 2 cut(s) 201, 287
SatI GCNGC 1 cut(s) 112
Sau3AI GATC 2 cut(s) 62, 204
SetI ASST 6 cut(s) 31, 113, 123, 171, 268, 314
SfaNI GCATC 1 cut(s) 145
Sfr274I CTCGAG 1 cut(s) 269
SlaI CTCGAG 1 cut(s) 269
SmlI CTYRAG 2 cut(s) 200, 269
SmoI CTYRAG 2 cut(s) 200, 269
Sse9I AATT 4 cut(s) 131, 173, 217, 284
SseBI AGGCCT 1 cut(s) 275
SsiI CCGC 1 cut(s) 194
SspI AATATT 1 cut(s) 58
SspMI CTAG 2 cut(s) 30, 35
StuI AGGCCT 1 cut(s) 275
TaaI ACNGT 1 cut(s) 211
TaqI TCGA 2 cut(s) 61, 270
TasI AATT 4 cut(s) 131, 173, 217, 284
Tru1I TTAA 2 cut(s) 201, 287
Tru9I TTAA 2 cut(s) 201, 287
TseI GCWGC 1 cut(s) 111
TspDTI ATGAA 1 cut(s) 101
TspGWI ACGGA 2 cut(s) 134, 167
Vha464I CTTAAG 1 cut(s) 200
VspI ATTAAT 1 cut(s) 287
XapI RAATTY 2 cut(s) 131, 173
XceI RCATGY 1 cut(s) 192
XhoI CTCGAG 1 cut(s) 269
XspI CTAG 2 cut(s) 30, 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.