RLG00000027692

3-phosphoinositide-dependent protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
N/A
Physical Location & Seq
Reverse (-)
14054452 .. 14055489
1038 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027692

Sequence Viewer

Length: 636 bp
ATGAAGCCTTCAATTACTACCCAACTGTTGCAGGATTTAGATCCCAGTAGGAGGCCTGGTGCTGGACACGATGGTTATGCTGCACTGAAGATGCATCCATTCTTTAAGGGAGTCGACTGGAAAAATTTAAGAGCACAAACCCCTCCAAAACTTGCCTTGGAGCCGGGGTCAGGTGAGGCTGATGATGTCCGTGATAGCTCATGGAACCCTTCACATATTGGAGATGGCACAGCAAGACAAAATGAGGGTAACACTGGTTCAGCATCCTCTTTTGAAGCGTTTGGTCATGTAATTAGGCTAGCTTCAATTGACTCCTTTGATTCAAAATGGCAACAATCCCTTGACCCTGGTGAGTCTGTTCTCATGATCTCAATGGTGAAGAAACTTCAAAAACTGACAAGCAAGAAGGTGCAACTTATTCTCACCAACAAGCCAAAGTTGATATATGTGGATCCTGCAAAGCTGTTGATGAAGGGAAATATAATTTGGTCTGACAACTCTAATGATCTCAATGTCCAAGTTGCTGGTCCTTCACAGTTCAAAATTGTTACGCCCAAAAAGGTGCTATCATTTGAGGATGCAAAACAAAGAGCATGGAAATGGAAGAAGGCAATTGAGGGGCTTCAAAATAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008289 GO:0009893 GO:0009987 GO:0010562 GO:0010604 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019220 GO:0019222 GO:0019538 GO:0023052 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0033674 GO:0035091 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0070300 GO:0071704 GO:0071944 GO:0080090 GO:0140096 GO:1901564
KEGG Pathways
Metabolic & Signaling
ko01524 ko03320 ko04011 ko04068 ko04071 ko04140 ko04150 ko04151 ko04152 ko04210 ko04510 ko04660 ko04664 ko04722 ko04910 ko04919 ko04931 ko04960 ko05145 ko05160 ko05205 ko05213 ko05215 ko05223 ko05231 map01524 map03320 map04011 map04068 map04071 map04140 map04150 map04151 map04152 map04210 map04510 map04660 map04664 map04722 map04910 map04919 map04931 map04960 map05145 map05160 map05205 map05213 map05215 map05223 map05231
Pfam Domains
Protein Families
PH_3 Pkinase

Protein Analysis

212

Amino Acids

23.41

Weight (kDa)

9.61

Isoelectric Point (pI)

40.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PH_3 PF14593 108 - 210 1.4e-28 PH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 114
AclWI GGATC 3 cut(s) 35, 446, 459
AcsI RAATTY 1 cut(s) 124
AcuI CTGAAG 1 cut(s) 107
AfiI CCNNNNNNNGG 3 cut(s) 51, 62, 170
AgsI TTSAA 7 cut(s) 12, 275, 306, 324, 389, 541, 626
AjnI CCWGG 2 cut(s) 55, 346
AjuI GAANNNNNNNTTGG 2 cut(s) 469, 501
AluBI AGCT 3 cut(s) 198, 302, 463
AluI AGCT 3 cut(s) 198, 302, 463
Alw21I GWGCWC 1 cut(s) 136
AlwI GGATC 3 cut(s) 35, 446, 459
AoxI GGCC 1 cut(s) 53
ApeKI GCWGC 1 cut(s) 80
ApoI RAATTY 1 cut(s) 124
AspS9I GGNCC 1 cut(s) 527
AsuC2I CCSGG 1 cut(s) 165
AsuHPI GGTGA 4 cut(s) 185, 362, 388, 415
AsuNHI GCTAGC 1 cut(s) 298
AvaII GGWCC 1 cut(s) 527
BamHI GGATCC 1 cut(s) 451
Bbv12I GWGCWC 1 cut(s) 136
BbvI GCAGC 1 cut(s) 67
BccI CCATC 2 cut(s) 65, 218
BcgI CGANNNNNNTGC 2 cut(s) 59, 93
BciT130I CCWGG 2 cut(s) 57, 348
BcnI CCSGG 1 cut(s) 165
BfaI CTAG 1 cut(s) 299
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
Bme1390I CCNGG 3 cut(s) 57, 165, 348
Bme18I GGWCC 1 cut(s) 527
BmgT120I GGNCC 1 cut(s) 527
BmiI GGNNCC 3 cut(s) 162, 206, 453
BmrFI CCNGG 3 cut(s) 57, 165, 348
BmrI ACTGGG 1 cut(s) 39
BmsI GCATC 4 cut(s) 81, 103, 272, 568
BmtI GCTAGC 1 cut(s) 302
BmuI ACTGGG 1 cut(s) 39
BpuMI CCSGG 1 cut(s) 165
BsaBI GATNNNNATC 1 cut(s) 39
BsaJI CCNNGG 3 cut(s) 156, 164, 346
BsaXI ACNNNNNCTCC 4 cut(s) 43, 73, 152, 182
Bsc4I CCNNNNNNNGG 3 cut(s) 51, 62, 170
Bse1I ACTGG 3 cut(s) 45, 122, 259
Bse8I GATNNNNATC 1 cut(s) 39
BseBI CCWGG 2 cut(s) 57, 348
BseDI CCNNGG 3 cut(s) 156, 164, 346
BseGI GGATG 3 cut(s) 94, 263, 583
BseJI GATNNNNATC 1 cut(s) 39
BseLI CCNNNNNNNGG 3 cut(s) 51, 62, 170
BseNI ACTGG 3 cut(s) 45, 122, 259
BseXI GCAGC 1 cut(s) 67
BsgI GTGCAG 1 cut(s) 66
BshFI GGCC 1 cut(s) 55
BsiHKAI GWGCWC 1 cut(s) 136
BsiSI CCGG 1 cut(s) 164
BslI CCNNNNNNNGG 3 cut(s) 51, 62, 170
BsnI GGCC 1 cut(s) 55
Bsp1286I GDGCHC 1 cut(s) 136
Bsp143I GATC 4 cut(s) 40, 366, 451, 505
BspANI GGCC 1 cut(s) 55
BspHI TCATGA 1 cut(s) 363
BspLI GGNNCC 3 cut(s) 162, 206, 453
BspOI GCTAGC 1 cut(s) 302
BspPI GGATC 3 cut(s) 35, 446, 459
BsrI ACTGG 3 cut(s) 45, 122, 259
BssECI CCNNGG 3 cut(s) 156, 164, 346
BssMI GATC 4 cut(s) 40, 366, 451, 505
BssT1I CCWWGG 1 cut(s) 156
Bst2UI CCWGG 2 cut(s) 57, 348
Bst4CI ACNGT 2 cut(s) 27, 537
BstC8I GCNNGC 1 cut(s) 300
BstF5I GGATG 3 cut(s) 94, 263, 583
BstKTI GATC 4 cut(s) 43, 369, 454, 508
BstMBI GATC 4 cut(s) 40, 366, 451, 505
BstNI CCWGG 2 cut(s) 57, 348
BstSCI CCNGG 3 cut(s) 55, 163, 346
BstV1I GCAGC 1 cut(s) 67
BstX2I RGATCY 2 cut(s) 40, 451
BstXI CCANNNNNNTGG 1 cut(s) 524
BstYI RGATCY 2 cut(s) 40, 451
BsuRI GGCC 1 cut(s) 55
BtsCI GGATG 3 cut(s) 94, 263, 583
BtsIMutI CAGTG 2 cut(s) 83, 252
Cac8I GCNNGC 1 cut(s) 300
CciI TCATGA 1 cut(s) 363
Cfr13I GGNCC 1 cut(s) 527
CviAII CATG 4 cut(s) 201, 287, 364, 594
DpnI GATC 4 cut(s) 42, 368, 453, 507
DpnII GATC 4 cut(s) 40, 366, 451, 505
Eco130I CCWWGG 1 cut(s) 156
Eco147I AGGCCT 1 cut(s) 55
Eco47I GGWCC 1 cut(s) 527
Eco57I CTGAAG 1 cut(s) 107
EcoRII CCWGG 2 cut(s) 55, 346
EcoT14I CCWWGG 1 cut(s) 156
EcoT22I ATGCAT 1 cut(s) 96
ErhI CCWWGG 1 cut(s) 156
FaeI CATG 4 cut(s) 204, 290, 367, 597
FaiI YATR 9 cut(s) 78, 202, 216, 288, 365, 445, 447, 482, 595
FatI CATG 4 cut(s) 200, 286, 363, 593
FblI GTMKAC 1 cut(s) 114
Fnu4HI GCNGC 1 cut(s) 81
FokI GGATG 3 cut(s) 81, 250, 590
Fsp4HI GCNGC 1 cut(s) 81
FspBI CTAG 1 cut(s) 299
GluI GCNGC 1 cut(s) 81
HaeIII GGCC 1 cut(s) 55
HapII CCGG 1 cut(s) 164
Hin1II CATG 4 cut(s) 204, 290, 367, 597
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HinfI GANTC 4 cut(s) 111, 311, 320, 353
HpaII CCGG 1 cut(s) 164
HphI GGTGA 4 cut(s) 185, 362, 388, 415
Hpy166II GTNNAC 1 cut(s) 115
Hpy188I TCNGA 1 cut(s) 493
Hpy188III TCNNGA 1 cut(s) 364
Hpy8I GTNNAC 1 cut(s) 115
HpyAV CCTTC 6 cut(s) 18, 219, 400, 466, 540, 601
HpyCH4III ACNGT 2 cut(s) 27, 537
HpyCH4V TGCA 6 cut(s) 31, 83, 94, 412, 458, 581
Hsp92II CATG 4 cut(s) 204, 290, 367, 597
Kzo9I GATC 4 cut(s) 40, 366, 451, 505
LmnI GCTCC 1 cut(s) 160
Lsp1109I GCAGC 1 cut(s) 67
LweI GCATC 4 cut(s) 81, 103, 272, 568
MaeI CTAG 1 cut(s) 299
MaeIII GTNAC 2 cut(s) 248, 547
MalI GATC 4 cut(s) 42, 368, 453, 507
MboI GATC 4 cut(s) 40, 366, 451, 505
MboII GAAGA 3 cut(s) 100, 391, 616
MfeI CAATTG 2 cut(s) 306, 612
MflI RGATCY 2 cut(s) 40, 451
MhlI GDGCHC 1 cut(s) 136
MluCI AATT 7 cut(s) 12, 124, 291, 306, 483, 543, 612
MlyI GAGTC 3 cut(s) 120, 305, 362
MnlI CCTC 7 cut(s) 45, 153, 169, 238, 277, 568, 610
Mph1103I ATGCAT 1 cut(s) 96
MseI TTAA 2 cut(s) 105, 128
MslI CAYNNNNRTG 1 cut(s) 598
MspI CCGG 1 cut(s) 164
MspR9I CCNGG 3 cut(s) 57, 165, 348
MunI CAATTG 2 cut(s) 306, 612
MvaI CCWGG 2 cut(s) 57, 348
NciI CCSGG 1 cut(s) 165
NdeII GATC 4 cut(s) 40, 366, 451, 505
NheI GCTAGC 1 cut(s) 298
NlaIII CATG 4 cut(s) 204, 290, 367, 597
NlaIV GGNNCC 3 cut(s) 162, 206, 453
NsiI ATGCAT 1 cut(s) 96
PagI TCATGA 1 cut(s) 363
PceI AGGCCT 1 cut(s) 55
PfeI GAWTC 1 cut(s) 320
PkrI GCNGC 1 cut(s) 82
PleI GAGTC 3 cut(s) 119, 305, 361
PpsI GAGTC 3 cut(s) 119, 305, 361
Psp6I CCWGG 2 cut(s) 55, 346
PspGI CCWGG 2 cut(s) 55, 346
PspN4I GGNNCC 3 cut(s) 162, 206, 453
PspPI GGNCC 1 cut(s) 527
PsrI GAACNNNNNNTAC 2 cut(s) 241, 273
PsuI RGATCY 2 cut(s) 40, 451
RseI CAYNNNNRTG 1 cut(s) 598
SalI GTCGAC 1 cut(s) 113
SaqAI TTAA 2 cut(s) 105, 128
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 4 cut(s) 40, 366, 451, 505
Sau96I GGNCC 1 cut(s) 527
SchI GAGTC 3 cut(s) 120, 305, 362
ScrFI CCNGG 3 cut(s) 57, 165, 348
SduI GDGCHC 1 cut(s) 136
SetI ASST 7 cut(s) 175, 200, 304, 411, 465, 564, 635
SfaNI GCATC 4 cut(s) 81, 103, 272, 568
SinI GGWCC 1 cut(s) 527
SmiMI CAYNNNNRTG 1 cut(s) 598
Sse9I AATT 7 cut(s) 12, 124, 291, 306, 483, 543, 612
SseBI AGGCCT 1 cut(s) 55
SspMI CTAG 1 cut(s) 299
StuI AGGCCT 1 cut(s) 55
StyD4I CCNGG 3 cut(s) 55, 163, 346
StyI CCWWGG 1 cut(s) 156
TaaI ACNGT 2 cut(s) 27, 537
TaqI TCGA 1 cut(s) 114
TasI AATT 7 cut(s) 12, 124, 291, 306, 483, 543, 612
TfiI GAWTC 1 cut(s) 320
Tru1I TTAA 2 cut(s) 105, 128
Tru9I TTAA 2 cut(s) 105, 128
TscAI CASTG 2 cut(s) 90, 259
TseI GCWGC 1 cut(s) 80
TspDTI ATGAA 2 cut(s) 17, 485
TspGWI ACGGA 1 cut(s) 179
TspRI CASTG 2 cut(s) 90, 259
VpaK11BI GGWCC 1 cut(s) 527
XapI RAATTY 1 cut(s) 124
XmiI GTMKAC 1 cut(s) 114
XspI CTAG 1 cut(s) 299
Zsp2I ATGCAT 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.