RLG00000027772

Mitogen-activated protein kinase kinase kinase 1-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
N/A
Physical Location & Seq
Reverse (-)
15022034 .. 15023651
1618 bp
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UTR
Exon/CDS
Intron
RLM00000027772

Sequence Viewer

Length: 324 bp
ATGTTCAAAAAGGAGTTTGACAGCAGCTCTTCTGAGGAAGAGGATCTTGTGAGTGAAGCAAATGGTGGTGGGAGTGAAGCGGGAGATGAAGTAAGGTTAGCGAAGGGCAATGACTTGGCTGAGTCTGTGTCTTGCAGCTCATCTCCGTCCAATAATGATAGTGATGATTATGGTGTTGGTATTGCTGTGAGGGTGCAGCCAATCCATGGTGTGTTTCTCCAAATGGGAAGTTCAGACGTAGTGTTTCGTCTTCGTGGCAAAGGGGCCAGCTTTTGGGGAGTGGTTCCTATGGAACTGTCTATGAAGGCTTTACTGAGTAAGTGA

Protein Analysis

108

Amino Acids

11.32

Weight (kDa)

4.55

Isoelectric Point (pI)

48.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 206, 273
AciI CCGC 1 cut(s) 80
AclWI GGATC 1 cut(s) 51
AfiI CCNNNNNNNGG 2 cut(s) 206, 273
AgsI TTSAA 1 cut(s) 7
AluBI AGCT 3 cut(s) 27, 138, 270
AluI AGCT 3 cut(s) 27, 138, 270
AlwI GGATC 1 cut(s) 51
AoxI GGCC 1 cut(s) 264
ApeKI GCWGC 3 cut(s) 24, 135, 196
AspS9I GGNCC 1 cut(s) 264
BbsI GAAGAC 1 cut(s) 242
BbvI GCAGC 3 cut(s) 36, 147, 208
BisI GCNGC 3 cut(s) 25, 136, 197
BlsI GCNGC 3 cut(s) 26, 137, 198
BmgT120I GGNCC 1 cut(s) 264
BmiI GGNNCC 2 cut(s) 265, 285
BpiI GAAGAC 1 cut(s) 242
BsaJI CCNNGG 1 cut(s) 205
BsaXI ACNNNNNCTCC 2 cut(s) 75, 105
Bsc4I CCNNNNNNNGG 2 cut(s) 206, 273
Bse3DI GCAATG 1 cut(s) 115
BseDI CCNNGG 1 cut(s) 205
BseLI CCNNNNNNNGG 2 cut(s) 206, 273
BseMI GCAATG 1 cut(s) 115
BseMII CTCAG 3 cut(s) 24, 111, 305
BseXI GCAGC 3 cut(s) 36, 147, 208
BsgI GTGCAG 1 cut(s) 215
BshFI GGCC 1 cut(s) 266
BslI CCNNNNNNNGG 2 cut(s) 206, 273
BsnI GGCC 1 cut(s) 266
Bsp143I GATC 1 cut(s) 43
Bsp19I CCATGG 1 cut(s) 205
BspACI CCGC 1 cut(s) 80
BspANI GGCC 1 cut(s) 266
BspCNI CTCAG 3 cut(s) 25, 112, 306
BspLI GGNNCC 2 cut(s) 265, 285
BspPI GGATC 1 cut(s) 51
BspQI GCTCTTC 1 cut(s) 34
BsrDI GCAATG 1 cut(s) 115
BssECI CCNNGG 1 cut(s) 205
BssMI GATC 1 cut(s) 43
BssT1I CCWWGG 1 cut(s) 205
Bst4CI ACNGT 1 cut(s) 297
Bst6I CTCTTC 2 cut(s) 33, 34
BstC8I GCNNGC 1 cut(s) 268
BstDEI CTNAG 3 cut(s) 33, 120, 314
BstDSI CCRYGG 1 cut(s) 205
BstKTI GATC 1 cut(s) 46
BstMBI GATC 1 cut(s) 43
BstV1I GCAGC 3 cut(s) 36, 147, 208
BstV2I GAAGAC 1 cut(s) 242
BstX2I RGATCY 1 cut(s) 43
BstYI RGATCY 1 cut(s) 43
BsuRI GGCC 1 cut(s) 266
BtgI CCRYGG 1 cut(s) 205
Cac8I GCNNGC 1 cut(s) 268
Cfr13I GGNCC 1 cut(s) 264
CviAII CATG 1 cut(s) 206
CviJI RGCY 7 cut(s) 27, 119, 138, 199, 266, 270, 308
CviKI_1 RGCY 7 cut(s) 27, 119, 138, 199, 266, 270, 308
DdeI CTNAG 3 cut(s) 33, 120, 314
DpnI GATC 1 cut(s) 45
DpnII GATC 1 cut(s) 43
Eam1104I CTCTTC 2 cut(s) 33, 34
EarI CTCTTC 2 cut(s) 33, 34
Eco130I CCWWGG 1 cut(s) 205
EcoT14I CCWWGG 1 cut(s) 205
ErhI CCWWGG 1 cut(s) 205
FaeI CATG 1 cut(s) 209
FaiI YATR 4 cut(s) 171, 207, 290, 302
FalI AAGNNNNNCTT 2 cut(s) 30, 62
FatI CATG 1 cut(s) 205
FauI CCCGC 1 cut(s) 73
Fnu4HI GCNGC 3 cut(s) 25, 136, 197
Fsp4HI GCNGC 3 cut(s) 25, 136, 197
GluI GCNGC 3 cut(s) 25, 136, 197
HaeIII GGCC 1 cut(s) 266
Hin1II CATG 1 cut(s) 209
HinfI GANTC 1 cut(s) 122
Hpy188I TCNGA 2 cut(s) 34, 235
HpyAV CCTTC 2 cut(s) 97, 298
HpyCH4III ACNGT 1 cut(s) 297
HpyCH4IV ACGT 1 cut(s) 237
HpyCH4V TGCA 2 cut(s) 135, 196
HpyF3I CTNAG 3 cut(s) 33, 120, 314
HpySE526I ACGT 1 cut(s) 237
Hsp92II CATG 1 cut(s) 209
Kzo9I GATC 1 cut(s) 43
LguI GCTCTTC 1 cut(s) 34
LpnPI CCDG 1 cut(s) 280
Lsp1109I GCAGC 3 cut(s) 36, 147, 208
MaeII ACGT 1 cut(s) 237
MalI GATC 1 cut(s) 45
MboI GATC 1 cut(s) 43
MboII GAAGA 3 cut(s) 21, 50, 242
MflI RGATCY 1 cut(s) 43
MlyI GAGTC 1 cut(s) 131
MnlI CCTC 3 cut(s) 28, 34, 183
NcoI CCATGG 1 cut(s) 205
NdeII GATC 1 cut(s) 43
NlaIII CATG 1 cut(s) 209
NlaIV GGNNCC 2 cut(s) 265, 285
PciSI GCTCTTC 1 cut(s) 34
PflMI CCANNNNNTGG 2 cut(s) 206, 273
PkrI GCNGC 3 cut(s) 26, 137, 198
PleI GAGTC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 130
PspN4I GGNNCC 2 cut(s) 265, 285
PspPI GGNCC 1 cut(s) 264
PsuI RGATCY 1 cut(s) 43
SapI GCTCTTC 1 cut(s) 34
SatI GCNGC 3 cut(s) 25, 136, 197
Sau3AI GATC 1 cut(s) 43
Sau96I GGNCC 1 cut(s) 264
SchI GAGTC 1 cut(s) 131
SetI ASST 5 cut(s) 29, 98, 140, 240, 272
SgeI CNNG 7 cut(s) 59, 93, 127, 144, 218, 266, 279
SsiI CCGC 1 cut(s) 80
StyI CCWWGG 1 cut(s) 205
TaaI ACNGT 1 cut(s) 297
TaiI ACGT 1 cut(s) 240
TseI GCWGC 3 cut(s) 24, 135, 196
TspDTI ATGAA 2 cut(s) 102, 317
TspGWI ACGGA 1 cut(s) 135
Van91I CCANNNNNTGG 2 cut(s) 206, 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.