RLG00000028098
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
N/A
Physical Location & Seq
Reverse (-)
18666787 .. 18667693
907 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028098

Sequence Viewer

Length: 486 bp
ATGAAAGAAACTGAATTAAGCACTTTGGGGAACTCTATGTTGCAAGTTTCATATGCTAGTCTCCTAAACGCTACTGATGGGTTTTCTTCAACTAATTTGATTGGCATTGGCGCTTTTGGGTCTATGTACAAAGGAATTCTTGCTGATGATGCAGCTACTGTTGCTGTGAAGGTGTTTAACGTGTTACATCGAGGAGCTTCTAAGAGTTTCATCTCCGAATGTGAGGCATTGAGAAACATCAGACATGGAAATATGGTCAAGATTCTAACTGCATGCTCAACTATTGATTTCAATGAACGAACCACTAATGTTTATGGAAATCAGTCAAGCTCCATTGGAATTAGAGGATCGGTTGGTTATGCTGCCCCTGAGTATGGTATCGAAAGTGAGGTGTCCACATATGGGGATGTATACAGCTTTGGGATTATTCTGTTAGAAATGTTTACTGGGAAGAGACCACTGGTCATATGTTCAGTGACAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

162

Amino Acids

17.22

Weight (kDa)

5.64

Isoelectric Point (pI)

32.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 30 - 94 3.5e-08 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 32 - 93 7.4e-08 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 411
AclWI GGATC 1 cut(s) 355
AcsI RAATTY 1 cut(s) 135
AfaI GTAC 1 cut(s) 128
AfiI CCNNNNNNNGG 2 cut(s) 374, 402
AflIII ACRYGT 1 cut(s) 180
AgsI TTSAA 2 cut(s) 90, 292
AhdI GACNNNNNGTC 1 cut(s) 461
AluBI AGCT 4 cut(s) 155, 197, 330, 417
AluI AGCT 4 cut(s) 155, 197, 330, 417
Alw26I GTCTC 2 cut(s) 65, 448
AlwI GGATC 1 cut(s) 355
AlwNI CAGNNNCTG 1 cut(s) 158
ApeKI GCWGC 2 cut(s) 152, 362
ApoI RAATTY 1 cut(s) 135
AspLEI GCGC 1 cut(s) 113
BbvI GCAGC 2 cut(s) 164, 349
BccI CCATC 1 cut(s) 71
BcoDI GTCTC 2 cut(s) 65, 448
BfaI CTAG 1 cut(s) 57
BfoI RGCGCY 1 cut(s) 114
BisI GCNGC 2 cut(s) 153, 363
BlsI GCNGC 2 cut(s) 154, 364
BmeRI GACNNNNNGTC 1 cut(s) 461
BmrI ACTGGG 1 cut(s) 456
BmsI GCATC 1 cut(s) 139
BmuI ACTGGG 1 cut(s) 456
BsaI GGTCTC 1 cut(s) 448
Bsc4I CCNNNNNNNGG 2 cut(s) 374, 402
Bse1I ACTGG 2 cut(s) 451, 465
BseGI GGATG 1 cut(s) 412
BseLI CCNNNNNNNGG 2 cut(s) 374, 402
BseMII CTCAG 1 cut(s) 360
BseNI ACTGG 2 cut(s) 451, 465
BseRI GAGGAG 1 cut(s) 207
BseXI GCAGC 2 cut(s) 164, 349
BslI CCNNNNNNNGG 2 cut(s) 374, 402
BsmAI GTCTC 2 cut(s) 65, 448
Bso31I GGTCTC 1 cut(s) 448
Bsp1407I TGTACA 1 cut(s) 126
Bsp143I GATC 1 cut(s) 347
BspCNI CTCAG 1 cut(s) 361
BspPI GGATC 1 cut(s) 355
BspTNI GGTCTC 1 cut(s) 448
BsrGI TGTACA 1 cut(s) 126
BsrI ACTGG 2 cut(s) 451, 465
BssMI GATC 1 cut(s) 347
BssNAI GTATAC 1 cut(s) 412
Bst1107I GTATAC 1 cut(s) 412
Bst4CI ACNGT 1 cut(s) 160
Bst6I CTCTTC 1 cut(s) 446
BstAUI TGTACA 1 cut(s) 126
BstC8I GCNNGC 1 cut(s) 274
BstDEI CTNAG 2 cut(s) 201, 369
BstF5I GGATG 1 cut(s) 412
BstH2I RGCGCY 1 cut(s) 114
BstHHI GCGC 1 cut(s) 113
BstKTI GATC 1 cut(s) 350
BstMAI GTCTC 2 cut(s) 65, 448
BstMBI GATC 1 cut(s) 347
BstMWI GCNNNNNNNGC 2 cut(s) 149, 161
BstNSI RCATGY 1 cut(s) 276
BstV1I GCAGC 2 cut(s) 164, 349
BstZ17I GTATAC 1 cut(s) 412
BtsCI GGATG 1 cut(s) 412
BtsIMutI CAGTG 2 cut(s) 458, 480
Cac8I GCNNGC 1 cut(s) 274
CaiI CAGNNNCTG 1 cut(s) 158
CfoI GCGC 1 cut(s) 113
Csp6I GTAC 1 cut(s) 127
CviAII CATG 2 cut(s) 245, 273
CviJI RGCY 4 cut(s) 155, 197, 330, 417
CviKI_1 RGCY 4 cut(s) 155, 197, 330, 417
CviQI GTAC 1 cut(s) 127
DdeI CTNAG 2 cut(s) 201, 369
DpnI GATC 1 cut(s) 349
DpnII GATC 1 cut(s) 347
DriI GACNNNNNGTC 1 cut(s) 461
Eam1104I CTCTTC 1 cut(s) 446
Eam1105I GACNNNNNGTC 1 cut(s) 461
EarI CTCTTC 1 cut(s) 446
Eco31I GGTCTC 1 cut(s) 448
EcoRI GAATTC 1 cut(s) 135
FaeI CATG 2 cut(s) 248, 276
FalI AAGNNNNNCTT 2 cut(s) 123, 155
FatI CATG 2 cut(s) 244, 272
FauNDI CATATG 3 cut(s) 52, 400, 467
FblI GTMKAC 1 cut(s) 411
Fnu4HI GCNGC 2 cut(s) 153, 363
FokI GGATG 1 cut(s) 419
Fsp4HI GCNGC 2 cut(s) 153, 363
FspBI CTAG 1 cut(s) 57
GlaI GCGC 1 cut(s) 112
GluI GCNGC 2 cut(s) 153, 363
HaeII RGCGCY 1 cut(s) 114
HhaI GCGC 1 cut(s) 113
Hin1II CATG 2 cut(s) 248, 276
Hin6I GCGC 1 cut(s) 111
HinP1I GCGC 1 cut(s) 111
HinfI GANTC 1 cut(s) 262
Hpy166II GTNNAC 3 cut(s) 396, 412, 444
Hpy188I TCNGA 2 cut(s) 217, 242
Hpy188III TCNNGA 1 cut(s) 259
Hpy8I GTNNAC 3 cut(s) 396, 412, 444
HpyAV CCTTC 1 cut(s) 163
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 3 cut(s) 43, 152, 272
HpyF10VI GCNNNNNNNGC 2 cut(s) 149, 161
HpyF3I CTNAG 2 cut(s) 201, 369
HpySE526I ACGT 1 cut(s) 180
Hsp92II CATG 2 cut(s) 248, 276
HspAI GCGC 1 cut(s) 111
Kzo9I GATC 1 cut(s) 347
LmnI GCTCC 2 cut(s) 194, 335
LpnPI CCDG 3 cut(s) 381, 432, 446
Lsp1109I GCAGC 2 cut(s) 164, 349
LweI GCATC 1 cut(s) 139
MaeI CTAG 1 cut(s) 57
MaeII ACGT 1 cut(s) 180
MaeIII GTNAC 2 cut(s) 183, 475
MalI GATC 1 cut(s) 349
MboI GATC 1 cut(s) 347
MboII GAAGA 2 cut(s) 78, 463
MluCI AATT 4 cut(s) 14, 94, 135, 339
MnlI CCTC 4 cut(s) 185, 217, 338, 382
MseI TTAA 3 cut(s) 17, 177, 484
MwoI GCNNNNNNNGC 2 cut(s) 149, 161
NdeI CATATG 3 cut(s) 52, 400, 467
NdeII GATC 1 cut(s) 347
NlaIII CATG 2 cut(s) 248, 276
NmuCI GTSAC 1 cut(s) 475
NspI RCATGY 1 cut(s) 276
PaeI GCATGC 1 cut(s) 276
PfeI GAWTC 1 cut(s) 262
PkrI GCNGC 2 cut(s) 154, 364
PstNI CAGNNNCTG 1 cut(s) 158
RsaI GTAC 1 cut(s) 128
RsaNI GTAC 1 cut(s) 127
SaqAI TTAA 3 cut(s) 17, 177, 484
SatI GCNGC 2 cut(s) 153, 363
Sau3AI GATC 1 cut(s) 347
SetI ASST 7 cut(s) 157, 174, 183, 199, 332, 393, 419
SfaNI GCATC 1 cut(s) 139
SphI GCATGC 1 cut(s) 276
Sse9I AATT 4 cut(s) 14, 94, 135, 339
SspMI CTAG 1 cut(s) 57
TaaI ACNGT 1 cut(s) 160
TaiI ACGT 1 cut(s) 183
TaqI TCGA 2 cut(s) 190, 381
TasI AATT 4 cut(s) 14, 94, 135, 339
TatI WGTACW 1 cut(s) 126
TfiI GAWTC 1 cut(s) 262
Tru1I TTAA 3 cut(s) 17, 177, 484
Tru9I TTAA 3 cut(s) 17, 177, 484
TscAI CASTG 2 cut(s) 465, 480
TseFI GTSAC 1 cut(s) 475
TseI GCWGC 2 cut(s) 152, 362
Tsp45I GTSAC 1 cut(s) 475
TspDTI ATGAA 4 cut(s) 17, 39, 199, 309
TspRI CASTG 2 cut(s) 465, 480
XapI RAATTY 1 cut(s) 135
XceI RCATGY 1 cut(s) 276
XmiI GTMKAC 1 cut(s) 411
XspI CTAG 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.