Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

30233511 .. 30234272

Gene Structure 762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028924

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGCCACCTTCGGTCTCTGTAATATTTTTACCCAAAAGTGGACCAGAAAGTTGTTACCATCGCATTTCAAGGAGTTCAAATTGCCTCGAGTTTTGAAGTTGGAACAAATGGAGGGAAAGATAAAGTTACTGAGTGCTATTGGGAGTCTAGGTGTACAAAATGCTAGAAGTGTTTGGGAATATGAAGCAACTGGGGCATTTGGAACTGAGGTTGAGGAGAACCACCAATTAGACATTTTACAGAAGCTCCAAAACTTAAGAGTTCTAACCCTTGAATTTAGTACTTTCGAGTCGGAGACAATGATTTTCTCAGAAAGAGGCTTTCCTTGTCTTACCATTGATAAATTGATCTTAAATGAGTTGAGAGTGGAGAAGGGGACCATGCCTACTGCACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0002230 GO:0002238 GO:0002239 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009314 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009615 GO:0009620 GO:0009626 GO:0009628 GO:0009637 GO:0009642 GO:0009646 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0012501 GO:0014070 GO:0016020 GO:0023052 GO:0030054 GO:0031347 GO:0032101 GO:0032870 GO:0033554 GO:0034050 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0043207 GO:0043900 GO:0044464 GO:0045087 GO:0046677 GO:0048583 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071944 GO:0080134 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

133

Amino Acids

15.15

Weight (kDa)

6.84

Isoelectric Point (pI)

32.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	275
AfaI	GTAC	2 cut(s)	156, 283
AfiI	CCNNNNNNNGG	1 cut(s)	39
AflII	CTTAAG	1 cut(s)	256
AgsI	TTSAA	4 cut(s)	70, 79, 97, 275
AluBI	AGCT	1 cut(s)	247
AluI	AGCT	1 cut(s)	247
Alw26I	GTCTC	2 cut(s)	20, 290
Ama87I	CYCGRG	1 cut(s)	87
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	1 cut(s)	275
AspS9I	GGNCC	2 cut(s)	42, 378
AvaI	CYCGRG	1 cut(s)	87
AvaII	GGWCC	2 cut(s)	42, 378
BalI	TGGCCA	1 cut(s)	5
BccI	CCATC	1 cut(s)	67
BcoDI	GTCTC	2 cut(s)	20, 290
BfaI	CTAG	2 cut(s)	149, 165
BfrI	CTTAAG	1 cut(s)	256
BmcAI	AGTACT	1 cut(s)	283
Bme18I	GGWCC	2 cut(s)	42, 378
BmeT110I	CYCGRG	1 cut(s)	87
BmgT120I	GGNCC	2 cut(s)	42, 378
BmiI	GGNNCC	1 cut(s)	379
BmrI	ACTGGG	1 cut(s)	201
BmuI	ACTGGG	1 cut(s)	201
BsaI	GGTCTC	1 cut(s)	20
BsaXI	ACNNNNNCTCC	4 cut(s)	136, 166, 231, 261
Bsc4I	CCNNNNNNNGG	1 cut(s)	39
Bse1I	ACTGG	1 cut(s)	196
BseLI	CCNNNNNNNGG	1 cut(s)	39
BseMII	CTCAG	3 cut(s)	122, 198, 324
BseNI	ACTGG	1 cut(s)	196
BseRI	GAGGAG	1 cut(s)	230
BsgI	GTGCAG	1 cut(s)	375
BshFI	GGCC	1 cut(s)	5
BsiHKCI	CYCGRG	1 cut(s)	87
BslFI	GGGAC	1 cut(s)	391
BslI	CCNNNNNNNGG	1 cut(s)	39
BsmAI	GTCTC	2 cut(s)	20, 290
BsmFI	GGGAC	1 cut(s)	391
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	20
BsoBI	CYCGRG	1 cut(s)	87
Bsp1407I	TGTACA	1 cut(s)	154
Bsp143I	GATC	1 cut(s)	348
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	123, 199, 323
BspLI	GGNNCC	1 cut(s)	379
BspTI	CTTAAG	1 cut(s)	256
BspTNI	GGTCTC	1 cut(s)	20
BsrGI	TGTACA	1 cut(s)	154
BsrI	ACTGG	1 cut(s)	196
BssMI	GATC	1 cut(s)	348
BstAFI	CTTAAG	1 cut(s)	256
BstAUI	TGTACA	1 cut(s)	154
BstDEI	CTNAG	3 cut(s)	131, 207, 310
BstKTI	GATC	1 cut(s)	351
BstMAI	GTCTC	2 cut(s)	20, 290
BstMBI	GATC	1 cut(s)	348
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BsuRI	GGCC	1 cut(s)	5
BtgZI	GCGATG	1 cut(s)	45
Cfr13I	GGNCC	2 cut(s)	42, 378
Csp6I	GTAC	2 cut(s)	155, 282
CviAII	CATG	1 cut(s)	382
CviJI	RGCY	3 cut(s)	5, 247, 321
CviKI_1	RGCY	3 cut(s)	5, 247, 321
CviQI	GTAC	2 cut(s)	155, 282
DdeI	CTNAG	3 cut(s)	131, 207, 310
DpnI	GATC	1 cut(s)	350
DpnII	GATC	1 cut(s)	348
EaeI	YGGCCR	1 cut(s)	3
Eco31I	GGTCTC	1 cut(s)	20
Eco47I	GGWCC	2 cut(s)	42, 378
Eco88I	CYCGRG	1 cut(s)	87
FaeI	CATG	1 cut(s)	385
FaiI	YATR	2 cut(s)	183, 383
FaqI	GGGAC	1 cut(s)	391
FatI	CATG	1 cut(s)	381
FspBI	CTAG	2 cut(s)	149, 165
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	385
HinfI	GANTC	2 cut(s)	145, 290
Hpy166II	GTNNAC	2 cut(s)	42, 155
Hpy188I	TCNGA	2 cut(s)	295, 313
Hpy8I	GTNNAC	2 cut(s)	42, 155
HpyAV	CCTTC	2 cut(s)	19, 367
HpyCH4V	TGCA	1 cut(s)	392
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
HpyF3I	CTNAG	3 cut(s)	131, 207, 310
Hsp92II	CATG	1 cut(s)	385
Kzo9I	GATC	1 cut(s)	348
LmnI	GCTCC	1 cut(s)	252
LpnPI	CCDG	2 cut(s)	58, 177
MaeI	CTAG	2 cut(s)	149, 165
MaeIII	GTNAC	2 cut(s)	54, 126
MalI	GATC	1 cut(s)	350
MboI	GATC	1 cut(s)	348
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	80, 227, 275, 344
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	154, 299
MmeI	TCCRAC	2 cut(s)	81, 273
MnlI	CCTC	5 cut(s)	96, 106, 202, 208, 311
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	257, 353
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	1 cut(s)	256
MwoI	GCNNNNNNNGC	1 cut(s)	194
NdeII	GATC	1 cut(s)	348
NlaIII	CATG	1 cut(s)	385
NlaIV	GGNNCC	1 cut(s)	379
PaeR7I	CTCGAG	1 cut(s)	87
PleI	GAGTC	2 cut(s)	153, 298
PpsI	GAGTC	2 cut(s)	153, 298
PspN4I	GGNNCC	1 cut(s)	379
PspPI	GGNCC	2 cut(s)	42, 378
PspXI	VCTCGAGB	1 cut(s)	87
RsaI	GTAC	2 cut(s)	156, 283
RsaNI	GTAC	2 cut(s)	155, 282
SaqAI	TTAA	2 cut(s)	257, 353
Sau3AI	GATC	1 cut(s)	348
Sau96I	GGNCC	2 cut(s)	42, 378
ScaI	AGTACT	1 cut(s)	283
SchI	GAGTC	2 cut(s)	154, 299
SetI	ASST	4 cut(s)	11, 154, 213, 249
Sfr274I	CTCGAG	1 cut(s)	87
SinI	GGWCC	2 cut(s)	42, 378
SlaI	CTCGAG	1 cut(s)	87
SmlI	CTYRAG	2 cut(s)	87, 256
SmoI	CTYRAG	2 cut(s)	87, 256
Sse9I	AATT	4 cut(s)	80, 227, 275, 344
SspI	AATATT	1 cut(s)	25
SspMI	CTAG	2 cut(s)	149, 165
TaqI	TCGA	2 cut(s)	88, 288
TasI	AATT	4 cut(s)	80, 227, 275, 344
TatI	WGTACW	2 cut(s)	154, 281
Tru1I	TTAA	2 cut(s)	257, 353
Tru9I	TTAA	2 cut(s)	257, 353
TspDTI	ATGAA	1 cut(s)	198
Vha464I	CTTAAG	1 cut(s)	256
VpaK11BI	GGWCC	2 cut(s)	42, 378
XapI	RAATTY	1 cut(s)	275
XhoI	CTCGAG	1 cut(s)	87
XspI	CTAG	2 cut(s)	149, 165
ZrmI	AGTACT	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.