RLG00000029581

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme isoform in each plant tissue

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
N/A
Physical Location & Seq
Reverse (-)
40731933 .. 40733596
1664 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029581

Sequence Viewer

Length: 408 bp
ATGACTGAGATCATACCTGGTTTGCAAGGAGATATGCCTCCCAGTTTCCAAAAGGGTGCTCCTCATGTTGGTGGAAAGTCTACATTATTGCTGCATCAACGGTTTTTCTTACAAGGTTCACAATCCAGCCTGAGCTTCATCCTTGGTGGCAACTATGGTGGAGCCTTGGGCGCCAATGCTTCAGCTAATGAACTTGAGGGGAACAAGTCTTTAAGGGAACTTCAGTTACACGGAAATTCTATTGGAGATGAAGGAGTCAATGCTTTGATGTCAGGTTTAGCCTTACATAAAGGTAAACTGACTCTTTTAGACATTGGCAACAATTTAACTAGTGTAAAAGGTGCTTTTCATGTTGGTGGATATATCAAAAAGACAGAGCTTGCTATGGTTGAACCTTTAGATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

136

Amino Acids

14.14

Weight (kDa)

6.18

Isoelectric Point (pI)

36.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 170
AccI GTMKAC 1 cut(s) 80
AcsI RAATTY 1 cut(s) 235
AcuI CTGAAG 2 cut(s) 165, 206
AcyI GRCGYC 1 cut(s) 171
AfiI CCNNNNNNNGG 1 cut(s) 68
AgsI TTSAA 1 cut(s) 392
AhlI ACTAGT 1 cut(s) 329
AjnI CCWGG 1 cut(s) 16
AluBI AGCT 3 cut(s) 135, 185, 379
AluI AGCT 3 cut(s) 135, 185, 379
Alw21I GWGCWC 1 cut(s) 61
ApeKI GCWGC 1 cut(s) 91
ApoI RAATTY 1 cut(s) 235
AspLEI GCGC 1 cut(s) 173
BanI GGYRCC 1 cut(s) 170
Bbv12I GWGCWC 1 cut(s) 61
BbvI GCAGC 1 cut(s) 78
BciT130I CCWGG 1 cut(s) 18
BcuI ACTAGT 1 cut(s) 329
BfaI CTAG 1 cut(s) 330
BfoI RGCGCY 1 cut(s) 174
BisI GCNGC 1 cut(s) 92
BlsI GCNGC 1 cut(s) 93
Bme1390I CCNGG 1 cut(s) 18
BmiI GGNNCC 2 cut(s) 163, 172
BmrFI CCNGG 1 cut(s) 18
BmrI ACTGGG 1 cut(s) 36
BmsI GCATC 1 cut(s) 103
BmuI ACTGGG 1 cut(s) 36
Bpu10I CCTNAGC 1 cut(s) 131
BpuEI CTTGAG 1 cut(s) 215
BsaHI GRCGYC 1 cut(s) 171
BsaJI CCNNGG 2 cut(s) 142, 165
Bsc4I CCNNNNNNNGG 1 cut(s) 68
Bse1I ACTGG 1 cut(s) 42
BseBI CCWGG 1 cut(s) 18
BseDI CCNNGG 2 cut(s) 142, 165
BseGI GGATG 1 cut(s) 138
BseLI CCNNNNNNNGG 1 cut(s) 68
BseMII CTCAG 1 cut(s) 122
BseNI ACTGG 1 cut(s) 42
BseRI GAGGAG 1 cut(s) 51
BseXI GCAGC 1 cut(s) 78
BshNI GGYRCC 1 cut(s) 170
BsiHKAI GWGCWC 1 cut(s) 61
BslI CCNNNNNNNGG 1 cut(s) 68
Bsp1286I GDGCHC 1 cut(s) 61
Bsp143I GATC 1 cut(s) 9
BspCNI CTCAG 1 cut(s) 123
BspLI GGNNCC 2 cut(s) 163, 172
BspT107I GGYRCC 1 cut(s) 170
BsrI ACTGG 1 cut(s) 42
BssECI CCNNGG 2 cut(s) 142, 165
BssMI GATC 1 cut(s) 9
BssNI GRCGYC 1 cut(s) 171
BssT1I CCWWGG 2 cut(s) 142, 165
Bst2UI CCWGG 1 cut(s) 18
Bst4CI ACNGT 1 cut(s) 102
BstACI GRCGYC 1 cut(s) 171
BstC8I GCNNGC 1 cut(s) 381
BstDEI CTNAG 2 cut(s) 6, 131
BstF5I GGATG 1 cut(s) 138
BstH2I RGCGCY 1 cut(s) 174
BstHHI GCGC 1 cut(s) 173
BstKTI GATC 1 cut(s) 12
BstMBI GATC 1 cut(s) 9
BstMWI GCNNNNNNNGC 1 cut(s) 170
BstNI CCWGG 1 cut(s) 18
BstSCI CCNGG 1 cut(s) 16
BstV1I GCAGC 1 cut(s) 78
BtsCI GGATG 1 cut(s) 138
Cac8I GCNNGC 1 cut(s) 381
CfoI GCGC 1 cut(s) 173
CsiI ACCWGGT 1 cut(s) 16
CspCI CAANNNNNGTGG 2 cut(s) 139, 174
CviAII CATG 2 cut(s) 65, 350
CviJI RGCY 6 cut(s) 129, 135, 164, 185, 281, 379
CviKI_1 RGCY 6 cut(s) 129, 135, 164, 185, 281, 379
DdeI CTNAG 2 cut(s) 6, 131
DinI GGCGCC 1 cut(s) 172
DpnI GATC 1 cut(s) 11
DpnII GATC 1 cut(s) 9
Eco130I CCWWGG 2 cut(s) 142, 165
Eco57I CTGAAG 2 cut(s) 165, 206
EcoRII CCWGG 1 cut(s) 16
EcoT14I CCWWGG 2 cut(s) 142, 165
EgeI GGCGCC 1 cut(s) 172
EheI GGCGCC 1 cut(s) 172
ErhI CCWWGG 2 cut(s) 142, 165
FaeI CATG 2 cut(s) 68, 353
FaiI YATR 8 cut(s) 14, 35, 66, 156, 288, 351, 363, 386
FatI CATG 2 cut(s) 64, 349
FblI GTMKAC 1 cut(s) 80
Fnu4HI GCNGC 1 cut(s) 92
FokI GGATG 1 cut(s) 125
Fsp4HI GCNGC 1 cut(s) 92
FspBI CTAG 1 cut(s) 330
GlaI GCGC 1 cut(s) 172
GluI GCNGC 1 cut(s) 92
HaeII RGCGCY 1 cut(s) 174
HhaI GCGC 1 cut(s) 173
Hin1I GRCGYC 1 cut(s) 171
Hin1II CATG 2 cut(s) 68, 353
Hin6I GCGC 1 cut(s) 171
HinP1I GCGC 1 cut(s) 171
HinfI GANTC 2 cut(s) 255, 301
Hpy166II GTNNAC 3 cut(s) 81, 119, 296
Hpy8I GTNNAC 3 cut(s) 81, 119, 296
HpyAV CCTTC 1 cut(s) 245
HpyCH4III ACNGT 1 cut(s) 102
HpyCH4V TGCA 2 cut(s) 25, 94
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
HpyF3I CTNAG 2 cut(s) 6, 131
Hsp92I GRCGYC 1 cut(s) 171
Hsp92II CATG 2 cut(s) 68, 353
HspAI GCGC 1 cut(s) 171
KasI GGCGCC 1 cut(s) 170
Kzo9I GATC 1 cut(s) 9
LmnI GCTCC 2 cut(s) 64, 161
LpnPI CCDG 6 cut(s) 3, 30, 55, 139, 143, 258
Lsp1109I GCAGC 1 cut(s) 78
LweI GCATC 1 cut(s) 103
MabI ACCWGGT 1 cut(s) 16
MaeI CTAG 1 cut(s) 330
MaeIII GTNAC 1 cut(s) 225
MalI GATC 1 cut(s) 11
MboI GATC 1 cut(s) 9
MhlI GDGCHC 1 cut(s) 61
MluCI AATT 2 cut(s) 235, 322
Mly113I GGCGCC 1 cut(s) 171
MlyI GAGTC 2 cut(s) 264, 295
MnlI CCTC 3 cut(s) 48, 72, 190
MseI TTAA 2 cut(s) 212, 326
MslI CAYNNNNRTG 2 cut(s) 69, 354
MspR9I CCNGG 1 cut(s) 18
MvaI CCWGG 1 cut(s) 18
MwoI GCNNNNNNNGC 1 cut(s) 170
NarI GGCGCC 1 cut(s) 171
NdeII GATC 1 cut(s) 9
NlaIII CATG 2 cut(s) 68, 353
NlaIV GGNNCC 2 cut(s) 163, 172
PkrI GCNGC 1 cut(s) 93
PleI GAGTC 2 cut(s) 263, 295
PluTI GGCGCC 1 cut(s) 174
PpsI GAGTC 2 cut(s) 263, 295
Psp6I CCWGG 1 cut(s) 16
PspGI CCWGG 1 cut(s) 16
PspN4I GGNNCC 2 cut(s) 163, 172
PsrI GAACNNNNNNTAC 2 cut(s) 210, 242
RseI CAYNNNNRTG 2 cut(s) 69, 354
SaqAI TTAA 2 cut(s) 212, 326
SatI GCNGC 1 cut(s) 92
Sau3AI GATC 1 cut(s) 9
SchI GAGTC 2 cut(s) 264, 295
ScrFI CCNGG 1 cut(s) 18
SduI GDGCHC 1 cut(s) 61
SetI ASST 9 cut(s) 19, 118, 137, 187, 277, 295, 343, 381, 397
SexAI ACCWGGT 1 cut(s) 16
SfaNI GCATC 1 cut(s) 103
SfoI GGCGCC 1 cut(s) 172
SmiMI CAYNNNNRTG 2 cut(s) 69, 354
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
SpeI ACTAGT 1 cut(s) 329
Sse9I AATT 2 cut(s) 235, 322
SspDI GGCGCC 1 cut(s) 170
SspMI CTAG 1 cut(s) 330
StyD4I CCNGG 1 cut(s) 16
StyI CCWWGG 2 cut(s) 142, 165
TaaI ACNGT 1 cut(s) 102
TasI AATT 2 cut(s) 235, 322
Tru1I TTAA 2 cut(s) 212, 326
Tru9I TTAA 2 cut(s) 212, 326
TseI GCWGC 1 cut(s) 91
TspDTI ATGAA 4 cut(s) 127, 204, 264, 338
TspGWI ACGGA 1 cut(s) 246
XapI RAATTY 1 cut(s) 235
XmiI GTMKAC 1 cut(s) 80
XspI CTAG 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.