Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

55390581 .. 55394378

Gene Structure 3798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030107

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGTCCAAATCTTGGTGGTGATGGTGGGCTTCTCCTTGAACTCTCCATGCTTTCAGGCGTTTGTCTACCTTCTCCCCTTTGCAGTGATGGTCAATCTTGGTGGTGGTATGAGTGATCTGAGATGTGACCGGATTTGGTTTTGTGGAGATGTAAAGGATCCTGCTCTTGGTGGAGGCGTAGGGGTCACGACTTTGGGATGGGCAGAGACGACAACCAAGGCTTGGGAGGAGGAAGGTTTTCGTCTTCCTTGCAGATACGATGGTGGCTTGTCTTACTGGATGGCCGCTCGCAGAGTCCATTCAATTTCGTGGTTTGGCGGGGAAGCTTCTCTGTTCAAAGTCAAGCTGGATGGCGACCATCAGGGCGTCAAACCATCAAGCACCATCTTCGCAAAATTTGAAGAAGGTTCATCATCATCAGTTTCACTTGCACCACGAGCACGTAATGAAGCAGACCAACAACAACATGCCGTATCTCTCAATGTCAAAGAGGCACCGATTGTGTCTTCCTACAACGACAAAATCCGTCTCCTCCTAGATGCCGTTGACGAGCTCCGTAACCTGATGGTTATGGAAGAAGGGATCCAGCTCCCCACTATTGTCGTCGTCGGAGACCAATCATCTGGAAAGTCTAGCGTCCTAAAGGAGAATACTCATCAAGAAGAGAAGCACATGCATGGGACAGCTAGACTGGTTGAGTTGGTTGATCAGTTTTCTGAAGAACTGCACGAGTGTGATGGAACTGAGGTCGCAAGGAAAAAAGTGAAGGGAATTTCGAGTATTCCAATTCGATTTGTTGAGAAGATTTGGGGCTGTACATCGAGGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007005 GO:0008017 GO:0008092 GO:0008150 GO:0009987 GO:0015631 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0044424 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04139 ko04214 ko04217 ko04621 ko04668 ko05162 ko05164 ko05165 map04139 map04214 map04217 map04621 map04668 map05162 map05164 map05165

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

277

Amino Acids

30.47

Weight (kDa)

5.7

Isoelectric Point (pI)

40.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	493
AccB7I	CCANNNNNTGG	2 cut(s)	13, 222
AccBSI	CCGCTC	1 cut(s)	287
AccI	GTMKAC	1 cut(s)	66
AciI	CCGC	2 cut(s)	285, 318
AclWI	GGATC	4 cut(s)	152, 165, 577, 590
AcoI	YGGCCR	1 cut(s)	282
AcsI	RAATTY	2 cut(s)	395, 771
AcuI	CTGAAG	1 cut(s)	738
AcyI	GRCGYC	1 cut(s)	366
AfaI	GTAC	1 cut(s)	817
AfiI	CCNNNNNNNGG	3 cut(s)	13, 167, 222
AgsI	TTSAA	4 cut(s)	40, 303, 337, 401
AleI	CACNNNNGTG	1 cut(s)	732
AluBI	AGCT	5 cut(s)	326, 346, 553, 589, 686
AluI	AGCT	5 cut(s)	326, 346, 553, 589, 686
Alw21I	GWGCWC	2 cut(s)	442, 555
Alw26I	GTCTC	3 cut(s)	200, 533, 606
AlwI	GGATC	4 cut(s)	152, 165, 577, 590
AoxI	GGCC	1 cut(s)	282
ApoI	RAATTY	2 cut(s)	395, 771
Asp700I	GAANNNNTTC	1 cut(s)	237
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	31
AvaII	GGWCC	1 cut(s)	4
BaeI	ACNNNNGTAYC	2 cut(s)	247, 280
BamHI	GGATCC	2 cut(s)	157, 582
BanI	GGYRCC	1 cut(s)	493
BanII	GRGCYC	1 cut(s)	555
BauI	CACGAG	2 cut(s)	435, 728
BbsI	GAAGAC	2 cut(s)	236, 498
Bbv12I	GWGCWC	2 cut(s)	442, 555
BceAI	ACGGC	2 cut(s)	455, 527
BcgI	CGANNNNNNTGC	2 cut(s)	370, 404
BclI	TGATCA	1 cut(s)	706
BcoDI	GTCTC	3 cut(s)	200, 533, 606
BfaI	CTAG	3 cut(s)	536, 633, 687
BisI	GCNGC	1 cut(s)	285
BlsI	GCNGC	1 cut(s)	286
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	3 cut(s)	159, 495, 584
BmsI	GCATC	1 cut(s)	529
BpiI	GAAGAC	2 cut(s)	236, 498
BsaAI	YACGTR	1 cut(s)	443
BsaHI	GRCGYC	1 cut(s)	366
BsaI	GGTCTC	1 cut(s)	606
BsaJI	CCNNGG	1 cut(s)	216
BsaWI	WCCGGW	1 cut(s)	129
Bsc4I	CCNNNNNNNGG	3 cut(s)	13, 167, 222
Bse1I	ACTGG	2 cut(s)	281, 696
BseDI	CCNNGG	1 cut(s)	216
BseGI	GGATG	4 cut(s)	203, 285, 355, 831
BseLI	CCNNNNNNNGG	3 cut(s)	13, 167, 222
BseMII	CTCAG	2 cut(s)	110, 735
BseNI	ACTGG	2 cut(s)	281, 696
BseRI	GAGGAG	2 cut(s)	242, 521
BsgI	GTGCAG	1 cut(s)	710
BshFI	GGCC	1 cut(s)	284
BshNI	GGYRCC	1 cut(s)	493
BsiHKAI	GWGCWC	2 cut(s)	442, 555
BsiSI	CCGG	1 cut(s)	130
BslFI	GGGAC	1 cut(s)	694
BslI	CCNNNNNNNGG	3 cut(s)	13, 167, 222
BsmAI	GTCTC	3 cut(s)	200, 533, 606
BsmBI	CGTCTC	2 cut(s)	200, 533
BsmFI	GGGAC	1 cut(s)	694
BsnI	GGCC	1 cut(s)	284
Bso31I	GGTCTC	1 cut(s)	606
Bsp1286I	GDGCHC	2 cut(s)	442, 555
Bsp1407I	TGTACA	1 cut(s)	815
Bsp143I	GATC	4 cut(s)	115, 157, 582, 706
BspACI	CCGC	2 cut(s)	285, 318
BspANI	GGCC	1 cut(s)	284
BspCNI	CTCAG	2 cut(s)	111, 736
BspLI	GGNNCC	3 cut(s)	159, 495, 584
BspPI	GGATC	4 cut(s)	152, 165, 577, 590
BspT107I	GGYRCC	1 cut(s)	493
BspTNI	GGTCTC	1 cut(s)	606
BsrBI	CCGCTC	1 cut(s)	287
BsrGI	TGTACA	1 cut(s)	815
BsrI	ACTGG	2 cut(s)	281, 696
BssECI	CCNNGG	1 cut(s)	216
BssMI	GATC	4 cut(s)	115, 157, 582, 706
BssNI	GRCGYC	1 cut(s)	366
BssSI	CACGAG	2 cut(s)	435, 728
BssT1I	CCWWGG	1 cut(s)	216
Bst2BI	CACGAG	2 cut(s)	435, 728
Bst6I	CTCTTC	1 cut(s)	657
BstACI	GRCGYC	1 cut(s)	366
BstAUI	TGTACA	1 cut(s)	815
BstBAI	YACGTR	1 cut(s)	443
BstC8I	GCNNGC	1 cut(s)	289
BstDEI	CTNAG	2 cut(s)	119, 744
BstF5I	GGATG	4 cut(s)	203, 285, 355, 831
BstKTI	GATC	4 cut(s)	118, 160, 585, 709
BstMAI	GTCTC	3 cut(s)	200, 533, 606
BstMBI	GATC	4 cut(s)	115, 157, 582, 706
BstMWI	GCNNNNNNNGC	1 cut(s)	437
BstNSI	RCATGY	2 cut(s)	470, 676
BstV2I	GAAGAC	2 cut(s)	236, 498
BstX2I	RGATCY	2 cut(s)	157, 582
BstXI	CCANNNNNNTGG	1 cut(s)	623
BstYI	RGATCY	2 cut(s)	157, 582
BsuRI	GGCC	1 cut(s)	284
BtsCI	GGATG	4 cut(s)	203, 285, 355, 831
BtsI	GCAGTG	1 cut(s)	90
BtsIMutI	CAGTG	1 cut(s)	90
Cac8I	GCNNGC	1 cut(s)	289
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	2 cut(s)	355, 625
Csp6I	GTAC	1 cut(s)	816
CspCI	CAANNNNNGTGG	2 cut(s)	82, 117
CviAII	CATG	4 cut(s)	48, 467, 673, 677
CviQI	GTAC	1 cut(s)	816
DdeI	CTNAG	2 cut(s)	119, 744
DpnI	GATC	4 cut(s)	117, 159, 584, 708
DpnII	GATC	4 cut(s)	115, 157, 582, 706
EaeI	YGGCCR	1 cut(s)	282
Eam1104I	CTCTTC	1 cut(s)	657
EarI	CTCTTC	1 cut(s)	657
Ecl136II	GAGCTC	1 cut(s)	553
Eco130I	CCWWGG	1 cut(s)	216
Eco24I	GRGCYC	1 cut(s)	555
Eco31I	GGTCTC	1 cut(s)	606
Eco47I	GGWCC	1 cut(s)	4
Eco53kI	GAGCTC	1 cut(s)	553
Eco57I	CTGAAG	1 cut(s)	738
EcoICRI	GAGCTC	1 cut(s)	553
EcoT14I	CCWWGG	1 cut(s)	216
EcoT22I	ATGCAT	1 cut(s)	678
EcoT38I	GRGCYC	1 cut(s)	555
ErhI	CCWWGG	1 cut(s)	216
Esp3I	CGTCTC	2 cut(s)	200, 533
FaeI	CATG	4 cut(s)	51, 470, 676, 680
FaiI	YATR	6 cut(s)	49, 110, 468, 572, 674, 678
FaqI	GGGAC	1 cut(s)	694
FatI	CATG	4 cut(s)	47, 466, 672, 676
FauI	CCCGC	1 cut(s)	311
FbaI	TGATCA	1 cut(s)	706
FblI	GTMKAC	1 cut(s)	66
Fnu4HI	GCNGC	1 cut(s)	285
FokI	GGATG	3 cut(s)	210, 292, 362
FriOI	GRGCYC	1 cut(s)	555
Fsp4HI	GCNGC	1 cut(s)	285
FspBI	CTAG	3 cut(s)	536, 633, 687
GluI	GCNGC	1 cut(s)	285
HaeIII	GGCC	1 cut(s)	284
HapII	CCGG	1 cut(s)	130
HgaI	GACGC	2 cut(s)	355, 625
Hin1I	GRCGYC	1 cut(s)	366
Hin1II	CATG	4 cut(s)	51, 470, 676, 680
HincII	GTYRAC	1 cut(s)	547
HindII	GTYRAC	1 cut(s)	547
HindIII	AAGCTT	1 cut(s)	324
HinfI	GANTC	1 cut(s)	294
HpaII	CCGG	1 cut(s)	130
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	2 cut(s)	67, 547
Hpy188I	TCNGA	3 cut(s)	120, 611, 718
Hpy188III	TCNNGA	3 cut(s)	187, 624, 659
Hpy8I	GTNNAC	2 cut(s)	67, 547
Hpy99I	CGWCG	2 cut(s)	608, 611
HpyAV	CCTTC	5 cut(s)	80, 227, 398, 572, 760
HpyCH4IV	ACGT	1 cut(s)	442
HpyCH4V	TGCA	5 cut(s)	83, 252, 431, 676, 727
HpyF10VI	GCNNNNNNNGC	1 cut(s)	437
HpyF3I	CTNAG	2 cut(s)	119, 744
HpySE526I	ACGT	1 cut(s)	442
Hsp92I	GRCGYC	1 cut(s)	366
Hsp92II	CATG	4 cut(s)	51, 470, 676, 680
Ksp22I	TGATCA	1 cut(s)	706
Kzo9I	GATC	4 cut(s)	115, 157, 582, 706
LmnI	GCTCC	2 cut(s)	558, 594
LweI	GCATC	1 cut(s)	529
MaeI	CTAG	3 cut(s)	536, 633, 687
MaeII	ACGT	1 cut(s)	442
MaeIII	GTNAC	3 cut(s)	125, 184, 557
MalI	GATC	4 cut(s)	117, 159, 584, 708
MbiI	CCGCTC	1 cut(s)	287
MboI	GATC	4 cut(s)	115, 157, 582, 706
MboII	GAAGA	8 cut(s)	236, 379, 413, 498, 587, 674, 731, 814
MflI	RGATCY	2 cut(s)	157, 582
MhlI	GDGCHC	2 cut(s)	442, 555
MluCI	AATT	4 cut(s)	303, 395, 771, 786
MlyI	GAGTC	1 cut(s)	303
MmeI	TCCRAC	1 cut(s)	589
MnlI	CCTC	7 cut(s)	167, 220, 223, 484, 542, 739, 816
Mph1103I	ATGCAT	1 cut(s)	678
MroXI	GAANNNNTTC	1 cut(s)	237
MslI	CAYNNNNRTG	2 cut(s)	675, 732
MspI	CCGG	1 cut(s)	130
MwoI	GCNNNNNNNGC	1 cut(s)	437
NdeII	GATC	4 cut(s)	115, 157, 582, 706
NlaIII	CATG	4 cut(s)	51, 470, 676, 680
NlaIV	GGNNCC	3 cut(s)	159, 495, 584
NmuCI	GTSAC	2 cut(s)	125, 184
NsiI	ATGCAT	1 cut(s)	678
NspI	RCATGY	2 cut(s)	470, 676
OliI	CACNNNNGTG	1 cut(s)	732
PdmI	GAANNNNTTC	1 cut(s)	237
PflMI	CCANNNNNTGG	2 cut(s)	13, 222
PkrI	GCNGC	1 cut(s)	286
PleI	GAGTC	1 cut(s)	302
PpsI	GAGTC	1 cut(s)	302
Ppu21I	YACGTR	1 cut(s)	443
Psp124BI	GAGCTC	1 cut(s)	555
PspN4I	GGNNCC	3 cut(s)	159, 495, 584
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	2 cut(s)	157, 582
RsaI	GTAC	1 cut(s)	817
RsaNI	GTAC	1 cut(s)	816
RseI	CAYNNNNRTG	2 cut(s)	675, 732
SacI	GAGCTC	1 cut(s)	555
SatI	GCNGC	1 cut(s)	285
Sau3AI	GATC	4 cut(s)	115, 157, 582, 706
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	303
SduI	GDGCHC	2 cut(s)	442, 555
SfaNI	GCATC	1 cut(s)	529
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	2 cut(s)	675, 732
Sse9I	AATT	4 cut(s)	303, 395, 771, 786
SsiI	CCGC	2 cut(s)	285, 318
SspMI	CTAG	3 cut(s)	536, 633, 687
SstI	GAGCTC	1 cut(s)	555
StyI	CCWWGG	1 cut(s)	216
TaiI	ACGT	1 cut(s)	445
TaqI	TCGA	3 cut(s)	776, 790, 821
TasI	AATT	4 cut(s)	303, 395, 771, 786
TatI	WGTACW	1 cut(s)	815
TauI	GCSGC	1 cut(s)	287
TscAI	CASTG	1 cut(s)	90
TseFI	GTSAC	2 cut(s)	125, 184
Tsp45I	GTSAC	2 cut(s)	125, 184
TspDTI	ATGAA	2 cut(s)	399, 462
TspGWI	ACGGA	2 cut(s)	515, 545
TspRI	CASTG	1 cut(s)	90
Van91I	CCANNNNNTGG	2 cut(s)	13, 222
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	2 cut(s)	395, 771
XceI	RCATGY	2 cut(s)	470, 676
XmiI	GTMKAC	1 cut(s)	66
XmnI	GAANNNNTTC	1 cut(s)	237
XspI	CTAG	3 cut(s)	536, 633, 687
Zsp2I	ATGCAT	1 cut(s)	678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.