Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

65864688 .. 65866124

Gene Structure 1437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030680

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGTGCGTCGTTTTTGTTTTGAGTCCGATATATTAATGCCTTCGAGGGTTGGAGTTGGAGTAGGAAGGAGGGAAGAAGACCAAGGGGTTTTGTTCCTTGATCCGGTGTCCTTTTATTCTGGGCATACTAGTCAGGGCACTTTATTGAATGGGTCAGACATCTCTGGTGAGCTGAAGTTAGATCGGATCTCTGGCCGGGTGTTGATGATTTGTCACAGGTGCTTGTGGGAGCTTGGTGAGGTCACAAATCCTGTAGTGGTGGTCCCGTTAGCAGTGGCTGCGATACCTCGATCAGCACATGTTGATAGATTGTTAGAAACGTTTGAGATTTTTGTTACAGATGGCGAAGCCACCGATTCCTCTAACGAAGATGAGCCGGAGCTGTTCTTCAGGCACCAGAGAATGAACAAGTATGTGAATGAGATTTCAATTAAGTCGTATTCAAGAGAGGCCAAGGTGGCTGCCTTTTGGAAGTGCAAGACGACAAGGACGGTAATTGACATCATTCAATTGCCAATTGAAGCCTCAAAACCCTTCGACAGAGTTCCTTGGTTAGTTGGCTACTTTGGGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

192

Amino Acids

21.63

Weight (kDa)

5.62

Isoelectric Point (pI)

42.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	393
AclI	AACGTT	1 cut(s)	320
AclWI	GGATC	2 cut(s)	95, 194
AcoI	YGGCCR	1 cut(s)	193
AcuI	CTGAAG	2 cut(s)	194, 373
AfiI	CCNNNNNNNGG	1 cut(s)	103
AflIII	ACRYGT	1 cut(s)	298
AgsI	TTSAA	5 cut(s)	148, 429, 444, 509, 521
AhlI	ACTAGT	1 cut(s)	128
AluBI	AGCT	3 cut(s)	172, 232, 382
AluI	AGCT	3 cut(s)	172, 232, 382
AlwI	GGATC	2 cut(s)	95, 194
AlwNI	CAGNNNCTG	1 cut(s)	278
AoxI	GGCC	2 cut(s)	193, 450
ApeKI	GCWGC	2 cut(s)	278, 461
AseI	ATTAAT	1 cut(s)	35
AspS9I	GGNCC	1 cut(s)	262
AsuC2I	CCSGG	1 cut(s)	197
AsuHPI	GGTGA	2 cut(s)	179, 248
AvaII	GGWCC	1 cut(s)	262
BaeGI	GKGCMC	1 cut(s)	140
BanI	GGYRCC	1 cut(s)	393
BbsI	GAAGAC	1 cut(s)	84
BbvI	GCAGC	2 cut(s)	265, 448
BccI	CCATC	1 cut(s)	335
BcnI	CCSGG	1 cut(s)	197
BcuI	ACTAGT	1 cut(s)	128
BfaI	CTAG	1 cut(s)	129
BfmI	CTRYAG	1 cut(s)	252
BglI	GCCNNNNNGGC	1 cut(s)	458
BisI	GCNGC	2 cut(s)	279, 462
BlsI	GCNGC	2 cut(s)	280, 463
Bme1390I	CCNGG	1 cut(s)	197
Bme18I	GGWCC	1 cut(s)	262
BmgT120I	GGNCC	1 cut(s)	262
BmiI	GGNNCC	2 cut(s)	264, 395
BmrFI	CCNGG	1 cut(s)	197
BpiI	GAAGAC	1 cut(s)	84
BpuMI	CCSGG	1 cut(s)	197
BsaJI	CCNNGG	3 cut(s)	82, 453, 548
BsaWI	WCCGGW	1 cut(s)	103
BsaXI	ACNNNNNCTCC	2 cut(s)	45, 75
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
BseDI	CCNNGG	3 cut(s)	82, 453, 548
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseSI	GKGCMC	1 cut(s)	140
BseXI	GCAGC	2 cut(s)	265, 448
BshFI	GGCC	2 cut(s)	195, 452
BshNI	GGYRCC	1 cut(s)	393
BsiSI	CCGG	3 cut(s)	104, 196, 377
BslFI	GGGAC	1 cut(s)	248
BslI	CCNNNNNNNGG	1 cut(s)	103
BsmFI	GGGAC	1 cut(s)	248
BsnI	GGCC	2 cut(s)	195, 452
Bsp1286I	GDGCHC	1 cut(s)	140
Bsp143I	GATC	4 cut(s)	100, 181, 186, 290
BspANI	GGCC	2 cut(s)	195, 452
BspLI	GGNNCC	2 cut(s)	264, 395
BspPI	GGATC	2 cut(s)	95, 194
BspT107I	GGYRCC	1 cut(s)	393
BssECI	CCNNGG	3 cut(s)	82, 453, 548
BssMI	GATC	4 cut(s)	100, 181, 186, 290
BssT1I	CCWWGG	3 cut(s)	82, 453, 548
Bst4CI	ACNGT	1 cut(s)	493
BstAPI	GCANNNNNTGC	1 cut(s)	278
BstKTI	GATC	4 cut(s)	103, 184, 189, 293
BstMBI	GATC	4 cut(s)	100, 181, 186, 290
BstMWI	GCNNNNNNNGC	2 cut(s)	278, 458
BstNSI	RCATGY	1 cut(s)	302
BstSCI	CCNGG	1 cut(s)	195
BstSFI	CTRYAG	1 cut(s)	252
BstSLI	GKGCMC	1 cut(s)	140
BstV1I	GCAGC	2 cut(s)	265, 448
BstV2I	GAAGAC	1 cut(s)	84
BstX2I	RGATCY	1 cut(s)	186
BstYI	RGATCY	1 cut(s)	186
BsuRI	GGCC	2 cut(s)	195, 452
BtsI	GCAGTG	1 cut(s)	279
BtsIMutI	CAGTG	1 cut(s)	279
CaiI	CAGNNNCTG	1 cut(s)	278
Cfr13I	GGNCC	1 cut(s)	262
CviAII	CATG	1 cut(s)	299
DpnI	GATC	4 cut(s)	102, 183, 188, 292
DpnII	GATC	4 cut(s)	100, 181, 186, 290
EaeI	YGGCCR	1 cut(s)	193
Eco130I	CCWWGG	3 cut(s)	82, 453, 548
Eco47I	GGWCC	1 cut(s)	262
Eco57I	CTGAAG	2 cut(s)	194, 373
EcoT14I	CCWWGG	3 cut(s)	82, 453, 548
ErhI	CCWWGG	3 cut(s)	82, 453, 548
FaeI	CATG	1 cut(s)	302
FaiI	YATR	4 cut(s)	32, 126, 300, 414
FaqI	GGGAC	1 cut(s)	248
FatI	CATG	1 cut(s)	298
Fnu4HI	GCNGC	2 cut(s)	279, 462
Fsp4HI	GCNGC	2 cut(s)	279, 462
FspBI	CTAG	1 cut(s)	129
GluI	GCNGC	2 cut(s)	279, 462
HaeIII	GGCC	2 cut(s)	195, 452
HapII	CCGG	3 cut(s)	104, 196, 377
Hin1II	CATG	1 cut(s)	302
HinfI	GANTC	2 cut(s)	23, 356
HpaII	CCGG	3 cut(s)	104, 196, 377
HphI	GGTGA	2 cut(s)	179, 248
Hpy188I	TCNGA	3 cut(s)	28, 157, 186
Hpy188III	TCNNGA	1 cut(s)	444
Hpy99I	CGWCG	1 cut(s)	12
HpyAV	CCTTC	3 cut(s)	51, 60, 544
HpyCH4III	ACNGT	1 cut(s)	493
HpyCH4IV	ACGT	1 cut(s)	320
HpyCH4V	TGCA	1 cut(s)	477
HpyF10VI	GCNNNNNNNGC	2 cut(s)	278, 458
HpySE526I	ACGT	1 cut(s)	320
Hsp92II	CATG	1 cut(s)	302
Kzo9I	GATC	4 cut(s)	100, 181, 186, 290
LmnI	GCTCC	2 cut(s)	229, 379
Lsp1109I	GCAGC	2 cut(s)	265, 448
MaeI	CTAG	1 cut(s)	129
MaeII	ACGT	1 cut(s)	320
MaeIII	GTNAC	3 cut(s)	212, 241, 334
MalI	GATC	4 cut(s)	102, 183, 188, 292
MboI	GATC	4 cut(s)	100, 181, 186, 290
MboII	GAAGA	4 cut(s)	86, 89, 379, 380
MfeI	CAATTG	2 cut(s)	509, 516
MflI	RGATCY	1 cut(s)	186
MhlI	GDGCHC	1 cut(s)	140
MluCI	AATT	4 cut(s)	429, 495, 509, 516
MlyI	GAGTC	1 cut(s)	32
MmeI	TCCRAC	2 cut(s)	31, 37
MnlI	CCTC	7 cut(s)	39, 63, 232, 297, 370, 442, 535
MseI	TTAA	2 cut(s)	35, 432
MspI	CCGG	3 cut(s)	104, 196, 377
MspR9I	CCNGG	1 cut(s)	197
MunI	CAATTG	2 cut(s)	509, 516
MwoI	GCNNNNNNNGC	2 cut(s)	278, 458
NciI	CCSGG	1 cut(s)	197
NdeII	GATC	4 cut(s)	100, 181, 186, 290
NlaIII	CATG	1 cut(s)	302
NlaIV	GGNNCC	2 cut(s)	264, 395
NmuCI	GTSAC	2 cut(s)	212, 241
NspI	RCATGY	1 cut(s)	302
PciI	ACATGT	1 cut(s)	298
PfeI	GAWTC	1 cut(s)	356
PkrI	GCNGC	2 cut(s)	280, 463
PleI	GAGTC	1 cut(s)	31
PpsI	GAGTC	1 cut(s)	31
PscI	ACATGT	1 cut(s)	298
PshBI	ATTAAT	1 cut(s)	35
Psp1406I	AACGTT	1 cut(s)	320
PspN4I	GGNNCC	2 cut(s)	264, 395
PspPI	GGNCC	1 cut(s)	262
PstNI	CAGNNNCTG	1 cut(s)	278
PsuI	RGATCY	1 cut(s)	186
SaqAI	TTAA	2 cut(s)	35, 432
SatI	GCNGC	2 cut(s)	279, 462
Sau3AI	GATC	4 cut(s)	100, 181, 186, 290
Sau96I	GGNCC	1 cut(s)	262
SchI	GAGTC	1 cut(s)	32
ScrFI	CCNGG	1 cut(s)	197
SduI	GDGCHC	1 cut(s)	140
SetI	ASST	8 cut(s)	174, 221, 234, 243, 289, 323, 384, 459
SfcI	CTRYAG	1 cut(s)	252
SinI	GGWCC	1 cut(s)	262
SpeI	ACTAGT	1 cut(s)	128
Sse9I	AATT	4 cut(s)	429, 495, 509, 516
SspMI	CTAG	1 cut(s)	129
StyD4I	CCNGG	1 cut(s)	195
StyI	CCWWGG	3 cut(s)	82, 453, 548
TaaI	ACNGT	1 cut(s)	493
TaiI	ACGT	1 cut(s)	323
TaqI	TCGA	3 cut(s)	44, 289, 537
TasI	AATT	4 cut(s)	429, 495, 509, 516
TfiI	GAWTC	1 cut(s)	356
Tru1I	TTAA	2 cut(s)	35, 432
Tru9I	TTAA	2 cut(s)	35, 432
TscAI	CASTG	1 cut(s)	279
TseFI	GTSAC	2 cut(s)	212, 241
TseI	GCWGC	2 cut(s)	278, 461
Tsp45I	GTSAC	2 cut(s)	212, 241
TspDTI	ATGAA	1 cut(s)	419
TspRI	CASTG	1 cut(s)	279
VpaK11BI	GGWCC	1 cut(s)	262
VspI	ATTAAT	1 cut(s)	35
XceI	RCATGY	1 cut(s)	302
XspI	CTAG	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.