RLG00000030793

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
N/A
Physical Location & Seq
Forward (+)
67662015 .. 67662798
784 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030793

Sequence Viewer

Length: 618 bp
ATGGAGACAATCCAGCACCAAAAGGATCCAAAGTGGAGTTCACAAAGGATGGTCATTTCAGGCTCACTAGCCCTCGGAGAGAAGAAATCTGGCCCCAGCCTCTTCAAAGACCCCAGCGACACCATTTTACCAACCCTTGTATTGGCAATTGGAGAAAAGCTATCTTCCAGGCAGACTGCTAGCAACTACTCAAAGGGGAAGTTTCAACTCCAATTTAAACCAGCAGCTGATGCAATGAACTCTGGTTATCAGCTAGCCTTCAAGGAGTCGGGTCAAATCAATGTTGTTCGGAGGAATGGAAATGTAGTCACCCTCACAGACAAAACAGTATCCCCATTTACAGAGCCACTAGATTCCGATGGGCTTTTTACCCAATACACTCATCCAAAGTCCCAAAAAAATGGGAATTGGACACCCTGGTTTTCTCTGTGGTCTATCCCAGAAAATTGCTTTGATTCAACTGGAAATGAGGGCGGCGGGCCATGTGGATATAACAGTTACTGCAGACTTGATGCAAACACAATGCCAATTTGTGAATGCCTTCCTGGCTTTTCTGCTTTAGATCCCGAATATAAGTTGCGCGGCTGCAACAAAACAGGATGCACAGTTGTGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase S_locus_glycop

Protein Analysis

206

Amino Acids

22.5

Weight (kDa)

8.12

Isoelectric Point (pI)

31.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 582
AciI CCGC 3 cut(s) 474, 477, 582
AclWI GGATC 3 cut(s) 20, 33, 557
AfiI CCNNNNNNNGG 1 cut(s) 142
AgsI TTSAA 4 cut(s) 106, 206, 262, 459
AjnI CCWGG 3 cut(s) 167, 416, 544
AjuI GAANNNNNNNTTGG 2 cut(s) 22, 54
AleI CACNNNNGTG 1 cut(s) 608
AluBI AGCT 3 cut(s) 160, 227, 253
AluI AGCT 3 cut(s) 160, 227, 253
AlwI GGATC 3 cut(s) 20, 33, 557
AlwNI CAGNNNCTG 2 cut(s) 227, 501
AoxI GGCC 2 cut(s) 91, 479
ApeKI GCWGC 2 cut(s) 224, 585
Asp700I GAANNNNTTC 1 cut(s) 540
AspLEI GCGC 1 cut(s) 582
AspS9I GGNCC 2 cut(s) 92, 479
AsuHPI GGTGA 1 cut(s) 301
AsuNHI GCTAGC 2 cut(s) 179, 253
BamHI GGATCC 1 cut(s) 25
BbvI GCAGC 2 cut(s) 236, 572
BccI CCATC 2 cut(s) 43, 353
BciT130I CCWGG 3 cut(s) 169, 418, 546
BciVI GTATCC 1 cut(s) 340
BfaI CTAG 5 cut(s) 68, 180, 254, 350, 616
BfmI CTRYAG 1 cut(s) 502
BfuI GTATCC 1 cut(s) 340
BglI GCCNNNNNGGC 1 cut(s) 546
BisI GCNGC 4 cut(s) 225, 475, 583, 586
BlsI GCNGC 4 cut(s) 226, 476, 584, 587
Bme1390I CCNGG 3 cut(s) 169, 418, 546
BmgT120I GGNCC 2 cut(s) 92, 479
BmiI GGNNCC 2 cut(s) 27, 94
BmrFI CCNGG 3 cut(s) 169, 418, 546
BmsI GCATC 3 cut(s) 220, 502, 590
BmtI GCTAGC 2 cut(s) 183, 257
BsaJI CCNNGG 2 cut(s) 73, 416
Bsc4I CCNNNNNNNGG 1 cut(s) 142
Bse1I ACTGG 1 cut(s) 466
Bse3DI GCAATG 1 cut(s) 240
BseBI CCWGG 3 cut(s) 169, 418, 546
BseDI CCNNGG 2 cut(s) 73, 416
BseGI GGATG 3 cut(s) 54, 382, 605
BseLI CCNNNNNNNGG 1 cut(s) 142
BseMI GCAATG 1 cut(s) 240
BseNI ACTGG 1 cut(s) 466
BseXI GCAGC 2 cut(s) 236, 572
BseYI CCCAGC 2 cut(s) 95, 113
Bsh1236I CGCG 1 cut(s) 582
BshFI GGCC 2 cut(s) 93, 481
BslFI GGGAC 1 cut(s) 376
BslI CCNNNNNNNGG 1 cut(s) 142
BsmFI GGGAC 1 cut(s) 376
BsmI GAATGC 1 cut(s) 542
BsnI GGCC 2 cut(s) 93, 481
Bsp143I GATC 2 cut(s) 25, 562
BspACI CCGC 3 cut(s) 474, 477, 582
BspANI GGCC 2 cut(s) 93, 481
BspFNI CGCG 1 cut(s) 582
BspLI GGNNCC 2 cut(s) 27, 94
BspMAI CTGCAG 1 cut(s) 506
BspOI GCTAGC 2 cut(s) 183, 257
BspPI GGATC 3 cut(s) 20, 33, 557
BsrDI GCAATG 1 cut(s) 240
BsrI ACTGG 1 cut(s) 466
BssECI CCNNGG 2 cut(s) 73, 416
BssMI GATC 2 cut(s) 25, 562
Bst2UI CCWGG 3 cut(s) 169, 418, 546
Bst4CI ACNGT 3 cut(s) 328, 497, 607
Bst6I CTCTTC 1 cut(s) 107
BstAPI GCANNNNNTGC 1 cut(s) 230
BstC8I GCNNGC 3 cut(s) 181, 255, 479
BstF5I GGATG 3 cut(s) 54, 382, 605
BstFNI CGCG 1 cut(s) 582
BstHHI GCGC 1 cut(s) 582
BstKTI GATC 2 cut(s) 28, 565
BstMBI GATC 2 cut(s) 25, 562
BstMWI GCNNNNNNNGC 2 cut(s) 230, 546
BstNI CCWGG 3 cut(s) 169, 418, 546
BstSCI CCNGG 3 cut(s) 167, 416, 544
BstSFI CTRYAG 1 cut(s) 502
BstUI CGCG 1 cut(s) 582
BstV1I GCAGC 2 cut(s) 236, 572
BstX2I RGATCY 2 cut(s) 25, 562
BstXI CCANNNNNNTGG 1 cut(s) 401
BstYI RGATCY 2 cut(s) 25, 562
BsuI GTATCC 1 cut(s) 340
BsuRI GGCC 2 cut(s) 93, 481
BtsCI GGATG 3 cut(s) 54, 382, 605
Cac8I GCNNGC 3 cut(s) 181, 255, 479
CaiI CAGNNNCTG 2 cut(s) 227, 501
CfoI GCGC 1 cut(s) 582
Cfr13I GGNCC 2 cut(s) 92, 479
CviAII CATG 1 cut(s) 483
DpnI GATC 2 cut(s) 27, 564
DpnII GATC 2 cut(s) 25, 562
DraI TTTAAA 1 cut(s) 217
Eam1104I CTCTTC 1 cut(s) 107
EarI CTCTTC 1 cut(s) 107
EcoRII CCWGG 3 cut(s) 167, 416, 544
FaeI CATG 1 cut(s) 486
FaiI YATR 3 cut(s) 484, 492, 573
FaqI GGGAC 1 cut(s) 376
FatI CATG 1 cut(s) 482
FauI CCCGC 1 cut(s) 470
Fnu4HI GCNGC 4 cut(s) 225, 475, 583, 586
FokI GGATG 3 cut(s) 61, 369, 612
Fsp4HI GCNGC 4 cut(s) 225, 475, 583, 586
FspBI CTAG 5 cut(s) 68, 180, 254, 350, 616
GlaI GCGC 1 cut(s) 581
GluI GCNGC 4 cut(s) 225, 475, 583, 586
GsaI CCCAGC 2 cut(s) 99, 117
HaeIII GGCC 2 cut(s) 93, 481
HhaI GCGC 1 cut(s) 582
Hin1II CATG 1 cut(s) 486
Hin6I GCGC 1 cut(s) 580
HinP1I GCGC 1 cut(s) 580
HinfI GANTC 3 cut(s) 266, 353, 455
HphI GGTGA 1 cut(s) 301
Hpy166II GTNNAC 2 cut(s) 41, 613
Hpy188I TCNGA 3 cut(s) 77, 291, 358
Hpy188III TCNNGA 1 cut(s) 566
Hpy8I GTNNAC 2 cut(s) 41, 613
HpyAV CCTTC 2 cut(s) 268, 551
HpyCH4III ACNGT 3 cut(s) 328, 497, 607
HpyCH4V TGCA 5 cut(s) 233, 504, 515, 588, 603
HpyF10VI GCNNNNNNNGC 2 cut(s) 230, 546
Hsp92II CATG 1 cut(s) 486
HspAI GCGC 1 cut(s) 580
Kzo9I GATC 2 cut(s) 25, 562
Lsp1109I GCAGC 2 cut(s) 236, 572
LweI GCATC 3 cut(s) 220, 502, 590
MaeI CTAG 5 cut(s) 68, 180, 254, 350, 616
MaeIII GTNAC 2 cut(s) 307, 497
MalI GATC 2 cut(s) 27, 564
MboI GATC 2 cut(s) 25, 562
MboII GAAGA 3 cut(s) 94, 94, 156
MfeI CAATTG 1 cut(s) 147
MflI RGATCY 2 cut(s) 25, 562
MluCI AATT 5 cut(s) 147, 212, 406, 445, 528
MlyI GAGTC 1 cut(s) 275
MnlI CCTC 5 cut(s) 83, 110, 285, 323, 463
MroXI GAANNNNTTC 1 cut(s) 540
MseI TTAA 1 cut(s) 216
MslI CAYNNNNRTG 1 cut(s) 608
MspA1I CMGCKG 1 cut(s) 227
MspR9I CCNGG 3 cut(s) 169, 418, 546
MunI CAATTG 1 cut(s) 147
Mva1269I GAATGC 1 cut(s) 542
MvaI CCWGG 3 cut(s) 169, 418, 546
MvnI CGCG 1 cut(s) 582
MwoI GCNNNNNNNGC 2 cut(s) 230, 546
NdeII GATC 2 cut(s) 25, 562
NheI GCTAGC 2 cut(s) 179, 253
NlaIII CATG 1 cut(s) 486
NlaIV GGNNCC 2 cut(s) 27, 94
NmuCI GTSAC 1 cut(s) 307
OliI CACNNNNGTG 1 cut(s) 608
PctI GAATGC 1 cut(s) 542
PdmI GAANNNNTTC 1 cut(s) 540
PfeI GAWTC 2 cut(s) 353, 455
PkrI GCNGC 4 cut(s) 226, 476, 584, 587
PleI GAGTC 1 cut(s) 274
PpsI GAGTC 1 cut(s) 274
Psp6I CCWGG 3 cut(s) 167, 416, 544
PspFI CCCAGC 2 cut(s) 95, 113
PspGI CCWGG 3 cut(s) 167, 416, 544
PspN4I GGNNCC 2 cut(s) 27, 94
PspPI GGNCC 2 cut(s) 92, 479
PstI CTGCAG 1 cut(s) 506
PstNI CAGNNNCTG 2 cut(s) 227, 501
PsuI RGATCY 2 cut(s) 25, 562
PvuII CAGCTG 1 cut(s) 227
RseI CAYNNNNRTG 1 cut(s) 608
SaqAI TTAA 1 cut(s) 216
SatI GCNGC 4 cut(s) 225, 475, 583, 586
Sau3AI GATC 2 cut(s) 25, 562
Sau96I GGNCC 2 cut(s) 92, 479
SchI GAGTC 1 cut(s) 275
ScrFI CCNGG 3 cut(s) 169, 418, 546
SetI ASST 3 cut(s) 162, 229, 255
SfaNI GCATC 3 cut(s) 220, 502, 590
SfcI CTRYAG 1 cut(s) 502
SmiMI CAYNNNNRTG 1 cut(s) 608
Sse9I AATT 5 cut(s) 147, 212, 406, 445, 528
SsiI CCGC 3 cut(s) 474, 477, 582
SspMI CTAG 5 cut(s) 68, 180, 254, 350, 616
StyD4I CCNGG 3 cut(s) 167, 416, 544
TaaI ACNGT 3 cut(s) 328, 497, 607
TasI AATT 5 cut(s) 147, 212, 406, 445, 528
TauI GCSGC 2 cut(s) 477, 585
TfiI GAWTC 2 cut(s) 353, 455
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TseFI GTSAC 1 cut(s) 307
TseI GCWGC 2 cut(s) 224, 585
Tsp45I GTSAC 1 cut(s) 307
TspDTI ATGAA 1 cut(s) 251
XmnI GAANNNNTTC 1 cut(s) 540
XspI CTAG 5 cut(s) 68, 180, 254, 350, 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.