RLG00000031288

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
N/A
Physical Location & Seq
Forward (+)
3737010 .. 3739616
2607 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031288

Sequence Viewer

Length: 750 bp
ATGCCCGGCAACCACTATTACACCGCCGTGTTCCAGCCCCTCATGGGCTCCCCTCCGGCGGTGGAGAAGAAGGCCTTGGATTGGTACACATTCATGAGCTCCAGCTCCAGTTCTGCCAGAAGACCCACAATCTCAATCGACTCGAGGCCCAGCGGATCGAGCTCAATTCCAGAGGGTCAGCTAGCAAATGAACAGAAAGTTGCTGTGAAAAGATTGTCCAAAACTTCAGGACGAGGGATTGAAGAATTCAAAAATGAAGTAGCACTTATAGCAAGACTTCAACACAGGAATCTTGTGAAACTTTTAGGCTGTTGTGTAAAGGGAGAAGAAAGGATGTTAGTGCTAGAATACATGCCCAACAAAAGCTTGGATTCCTTTCTTTTTATAACACAAGACAAATATTCCACAGAGACCAACTGCAAGATAAGACGAGCTGAATTGTCAGAACATATGGCTACATGTCGCCAGAGCATAGCCTTAGATATTTTGGATTCGACACTGAAGTCATGTCAGCCTAATGAAGTCATGAGATGCATACATGTTGCGCTCTTGTGTGTACAAGAAGATTCAAAGGACCGACCTGCCATGTCAGCCATTGTTTTCATGTTGAGTGGTGATGCATCTCCTCCATTGCCTAAGCAGCCTGCATTTGTTTACAGAAGAGATTCCCGCGCTGATGTTGATCCATTACTTCTGAAAGGATCTTATTCTATAAACGACTTGACAATAACTACAATGGGAGCTCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

250

Amino Acids

27.7

Weight (kDa)

8.8

Isoelectric Point (pI)

61.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 62 - 142 1.2e-14 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 62 - 145 5.1e-10 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 386
AasI GACNNNNNNGTC 1 cut(s) 502
Acc36I ACCTGC 1 cut(s) 589
AccII CGCG 1 cut(s) 672
AciI CCGC 4 cut(s) 24, 59, 153, 670
AclWI GGATC 3 cut(s) 163, 677, 709
AcsI RAATTY 1 cut(s) 245
AcuI CTGAAG 2 cut(s) 210, 521
AfaI GTAC 2 cut(s) 86, 558
AfiI CCNNNNNNNGG 3 cut(s) 44, 58, 81
AflIII ACRYGT 2 cut(s) 458, 538
AgsI TTSAA 4 cut(s) 242, 250, 281, 570
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AleI CACNNNNGTG 1 cut(s) 26
AluBI AGCT 7 cut(s) 99, 105, 162, 181, 366, 434, 743
AluI AGCT 7 cut(s) 99, 105, 162, 181, 366, 434, 743
Alw21I GWGCWC 3 cut(s) 101, 164, 745
Alw26I GTCTC 1 cut(s) 404
AlwI GGATC 3 cut(s) 163, 677, 709
Ama87I CYCGRG 1 cut(s) 142
AoxI GGCC 2 cut(s) 72, 146
ApeKI GCWGC 1 cut(s) 640
ApoI RAATTY 1 cut(s) 245
Asp700I GAANNNNTTC 1 cut(s) 664
AspLEI GCGC 2 cut(s) 547, 674
AspS9I GGNCC 2 cut(s) 147, 574
AsuC2I CCSGG 1 cut(s) 6
AsuHPI GGTGA 1 cut(s) 626
AsuNHI GCTAGC 1 cut(s) 181
AvaI CYCGRG 1 cut(s) 142
AvaII GGWCC 1 cut(s) 574
BanII GRGCYC 4 cut(s) 50, 101, 164, 745
BbsI GAAGAC 1 cut(s) 127
Bbv12I GWGCWC 3 cut(s) 101, 164, 745
BbvI GCAGC 1 cut(s) 652
BceAI ACGGC 1 cut(s) 11
BcnI CCSGG 1 cut(s) 6
BcoDI GTCTC 1 cut(s) 404
BfaI CTAG 2 cut(s) 182, 344
BfuAI ACCTGC 1 cut(s) 589
BisI GCNGC 1 cut(s) 641
BlsI GCNGC 1 cut(s) 642
Bme1390I CCNGG 1 cut(s) 6
Bme18I GGWCC 1 cut(s) 574
BmeT110I CYCGRG 1 cut(s) 142
BmgT120I GGNCC 2 cut(s) 147, 574
BmiI GGNNCC 1 cut(s) 49
BmrFI CCNGG 1 cut(s) 6
BmsI GCATC 3 cut(s) 521, 607, 629
BmtI GCTAGC 1 cut(s) 185
BpiI GAAGAC 1 cut(s) 127
BpmI CTGGAG 2 cut(s) 85, 91
Bpu10I CCTNAGC 1 cut(s) 636
BpuMI CCSGG 1 cut(s) 6
BsaBI GATNNNNATC 1 cut(s) 681
BsaI GGTCTC 1 cut(s) 404
BsaJI CCNNGG 1 cut(s) 75
Bsc4I CCNNNNNNNGG 3 cut(s) 44, 58, 81
Bse1I ACTGG 1 cut(s) 108
Bse3DI GCAATG 1 cut(s) 629
Bse8I GATNNNNATC 1 cut(s) 681
BseDI CCNNGG 1 cut(s) 75
BseGI GGATG 1 cut(s) 339
BseJI GATNNNNATC 1 cut(s) 681
BseLI CCNNNNNNNGG 3 cut(s) 44, 58, 81
BseMI GCAATG 1 cut(s) 629
BseNI ACTGG 1 cut(s) 108
BseRI GAGGAG 1 cut(s) 615
BseXI GCAGC 1 cut(s) 652
BseYI CCCAGC 1 cut(s) 149
Bsh1236I CGCG 1 cut(s) 672
BshFI GGCC 2 cut(s) 74, 148
BsiHKAI GWGCWC 3 cut(s) 101, 164, 745
BsiHKCI CYCGRG 1 cut(s) 142
BsiSI CCGG 2 cut(s) 6, 56
BslI CCNNNNNNNGG 3 cut(s) 44, 58, 81
BsmAI GTCTC 1 cut(s) 404
BsnI GGCC 2 cut(s) 74, 148
Bso31I GGTCTC 1 cut(s) 404
BsoBI CYCGRG 1 cut(s) 142
Bsp1286I GDGCHC 4 cut(s) 50, 101, 164, 745
Bsp1407I TGTACA 1 cut(s) 556
Bsp143I GATC 3 cut(s) 155, 682, 701
BspACI CCGC 4 cut(s) 24, 59, 153, 670
BspANI GGCC 2 cut(s) 74, 148
BspFNI CGCG 1 cut(s) 672
BspHI TCATGA 2 cut(s) 93, 525
BspLI GGNNCC 1 cut(s) 49
BspMI ACCTGC 1 cut(s) 589
BspOI GCTAGC 1 cut(s) 185
BspPI GGATC 3 cut(s) 163, 677, 709
BspTNI GGTCTC 1 cut(s) 404
BsrDI GCAATG 1 cut(s) 629
BsrGI TGTACA 1 cut(s) 556
BsrI ACTGG 1 cut(s) 108
BssECI CCNNGG 1 cut(s) 75
BssMI GATC 3 cut(s) 155, 682, 701
BssT1I CCWWGG 1 cut(s) 75
Bst6I CTCTTC 1 cut(s) 655
BstAUI TGTACA 1 cut(s) 556
BstC8I GCNNGC 2 cut(s) 183, 645
BstDEI CTNAG 2 cut(s) 478, 636
BstF5I GGATG 1 cut(s) 339
BstFNI CGCG 1 cut(s) 672
BstHHI GCGC 2 cut(s) 547, 674
BstKTI GATC 3 cut(s) 158, 685, 704
BstMAI GTCTC 1 cut(s) 404
BstMBI GATC 3 cut(s) 155, 682, 701
BstMWI GCNNNNNNNGC 4 cut(s) 159, 269, 590, 640
BstNSI RCATGY 3 cut(s) 355, 462, 542
BstSCI CCNGG 1 cut(s) 4
BstUI CGCG 1 cut(s) 672
BstV1I GCAGC 1 cut(s) 652
BstV2I GAAGAC 1 cut(s) 127
BstX2I RGATCY 1 cut(s) 701
BstYI RGATCY 1 cut(s) 701
BsuRI GGCC 2 cut(s) 74, 148
BtsCI GGATG 1 cut(s) 339
BtsIMutI CAGTG 1 cut(s) 497
BveI ACCTGC 1 cut(s) 589
Cac8I GCNNGC 2 cut(s) 183, 645
CciI TCATGA 2 cut(s) 93, 525
CfoI GCGC 2 cut(s) 547, 674
Cfr13I GGNCC 2 cut(s) 147, 574
Csp6I GTAC 2 cut(s) 85, 557
CviAII CATG 9 cut(s) 43, 94, 352, 459, 507, 526, 539, 586, 604
CviQI GTAC 2 cut(s) 85, 557
DdeI CTNAG 2 cut(s) 478, 636
DpnI GATC 3 cut(s) 157, 684, 703
DpnII GATC 3 cut(s) 155, 682, 701
DrdI GACNNNNNNGTC 1 cut(s) 502
DseDI GACNNNNNNGTC 1 cut(s) 502
Eam1104I CTCTTC 1 cut(s) 655
EarI CTCTTC 1 cut(s) 655
Ecl136II GAGCTC 3 cut(s) 99, 162, 743
Eco130I CCWWGG 1 cut(s) 75
Eco147I AGGCCT 1 cut(s) 74
Eco24I GRGCYC 4 cut(s) 50, 101, 164, 745
Eco31I GGTCTC 1 cut(s) 404
Eco47I GGWCC 1 cut(s) 574
Eco53kI GAGCTC 3 cut(s) 99, 162, 743
Eco57I CTGAAG 2 cut(s) 210, 521
Eco88I CYCGRG 1 cut(s) 142
EcoICRI GAGCTC 3 cut(s) 99, 162, 743
EcoRI GAATTC 1 cut(s) 245
EcoT14I CCWWGG 1 cut(s) 75
EcoT22I ATGCAT 2 cut(s) 536, 622
EcoT38I GRGCYC 4 cut(s) 50, 101, 164, 745
ErhI CCWWGG 1 cut(s) 75
FaeI CATG 9 cut(s) 46, 97, 355, 462, 510, 529, 542, 589, 607
FalI AAGNNNNNCTT 4 cut(s) 59, 91, 249, 281
FatI CATG 9 cut(s) 42, 93, 351, 458, 506, 525, 538, 585, 603
FauI CCCGC 1 cut(s) 677
FauNDI CATATG 1 cut(s) 450
Fnu4HI GCNGC 1 cut(s) 641
FokI GGATG 1 cut(s) 346
FriOI GRGCYC 4 cut(s) 50, 101, 164, 745
Fsp4HI GCNGC 1 cut(s) 641
FspBI CTAG 2 cut(s) 182, 344
GlaI GCGC 2 cut(s) 546, 673
GluI GCNGC 1 cut(s) 641
GsaI CCCAGC 1 cut(s) 153
GsuI CTGGAG 2 cut(s) 85, 91
HaeIII GGCC 2 cut(s) 74, 148
HapII CCGG 2 cut(s) 6, 56
HhaI GCGC 2 cut(s) 547, 674
Hin1II CATG 9 cut(s) 46, 97, 355, 462, 510, 529, 542, 589, 607
Hin6I GCGC 2 cut(s) 545, 672
HinP1I GCGC 2 cut(s) 545, 672
HindIII AAGCTT 1 cut(s) 364
HinfI GANTC 6 cut(s) 140, 289, 371, 491, 566, 665
HpaII CCGG 2 cut(s) 6, 56
HphI GGTGA 1 cut(s) 626
Hpy166II GTNNAC 3 cut(s) 87, 557, 655
Hpy188I TCNGA 2 cut(s) 445, 696
Hpy188III TCNNGA 4 cut(s) 94, 170, 228, 526
Hpy8I GTNNAC 3 cut(s) 87, 557, 655
HpyAV CCTTC 1 cut(s) 64
HpyCH4V TGCA 4 cut(s) 420, 534, 620, 647
HpyF10VI GCNNNNNNNGC 4 cut(s) 159, 269, 590, 640
HpyF3I CTNAG 2 cut(s) 478, 636
Hsp92II CATG 9 cut(s) 46, 97, 355, 462, 510, 529, 542, 589, 607
HspAI GCGC 2 cut(s) 545, 672
Kzo9I GATC 3 cut(s) 155, 682, 701
LmnI GCTCC 4 cut(s) 53, 104, 110, 740
Lsp1109I GCAGC 1 cut(s) 652
LweI GCATC 3 cut(s) 521, 607, 629
MaeI CTAG 2 cut(s) 182, 344
MalI GATC 3 cut(s) 157, 684, 703
MboI GATC 3 cut(s) 155, 682, 701
MboII GAAGA 6 cut(s) 79, 132, 254, 338, 575, 672
MflI RGATCY 1 cut(s) 701
MhlI GDGCHC 4 cut(s) 50, 101, 164, 745
MluCI AATT 3 cut(s) 165, 245, 437
MlyI GAGTC 1 cut(s) 134
MnlI CCTC 6 cut(s) 50, 63, 138, 166, 227, 636
Mph1103I ATGCAT 2 cut(s) 536, 622
MroXI GAANNNNTTC 1 cut(s) 664
MslI CAYNNNNRTG 2 cut(s) 26, 92
MspA1I CMGCKG 1 cut(s) 153
MspI CCGG 2 cut(s) 6, 56
MspR9I CCNGG 1 cut(s) 6
MvnI CGCG 1 cut(s) 672
MwoI GCNNNNNNNGC 4 cut(s) 159, 269, 590, 640
NciI CCSGG 1 cut(s) 6
NdeI CATATG 1 cut(s) 450
NdeII GATC 3 cut(s) 155, 682, 701
NheI GCTAGC 1 cut(s) 181
NlaIII CATG 9 cut(s) 46, 97, 355, 462, 510, 529, 542, 589, 607
NlaIV GGNNCC 1 cut(s) 49
NsiI ATGCAT 2 cut(s) 536, 622
NspI RCATGY 3 cut(s) 355, 462, 542
OliI CACNNNNGTG 1 cut(s) 26
PaeR7I CTCGAG 1 cut(s) 142
PagI TCATGA 2 cut(s) 93, 525
PceI AGGCCT 1 cut(s) 74
PciI ACATGT 2 cut(s) 458, 538
PdmI GAANNNNTTC 1 cut(s) 664
PfeI GAWTC 5 cut(s) 289, 371, 491, 566, 665
PkrI GCNGC 1 cut(s) 642
PleI GAGTC 1 cut(s) 134
PpsI GAGTC 1 cut(s) 134
PscI ACATGT 2 cut(s) 458, 538
PsiI TTATAA 1 cut(s) 386
Psp124BI GAGCTC 3 cut(s) 101, 164, 745
PspFI CCCAGC 1 cut(s) 149
PspN4I GGNNCC 1 cut(s) 49
PspPI GGNCC 2 cut(s) 147, 574
PspXI VCTCGAGB 1 cut(s) 142
PsuI RGATCY 1 cut(s) 701
RsaI GTAC 2 cut(s) 86, 558
RsaNI GTAC 2 cut(s) 85, 557
RseI CAYNNNNRTG 2 cut(s) 26, 92
SacI GAGCTC 3 cut(s) 101, 164, 745
SatI GCNGC 1 cut(s) 641
Sau3AI GATC 3 cut(s) 155, 682, 701
Sau96I GGNCC 2 cut(s) 147, 574
SchI GAGTC 1 cut(s) 134
ScrFI CCNGG 1 cut(s) 6
SduI GDGCHC 4 cut(s) 50, 101, 164, 745
SetI ASST 8 cut(s) 101, 107, 164, 183, 368, 436, 583, 745
SfaNI GCATC 3 cut(s) 521, 607, 629
Sfr274I CTCGAG 1 cut(s) 142
SinI GGWCC 1 cut(s) 574
SlaI CTCGAG 1 cut(s) 142
SmiMI CAYNNNNRTG 2 cut(s) 26, 92
SmlI CTYRAG 1 cut(s) 142
SmoI CTYRAG 1 cut(s) 142
Sse9I AATT 3 cut(s) 165, 245, 437
SseBI AGGCCT 1 cut(s) 74
SsiI CCGC 4 cut(s) 24, 59, 153, 670
SspI AATATT 1 cut(s) 401
SspMI CTAG 2 cut(s) 182, 344
SstI GAGCTC 3 cut(s) 101, 164, 745
StuI AGGCCT 1 cut(s) 74
StyD4I CCNGG 1 cut(s) 4
StyI CCWWGG 1 cut(s) 75
TaqI TCGA 5 cut(s) 138, 143, 158, 494, 745
TaqII GACCGA 1 cut(s) 591
TasI AATT 3 cut(s) 165, 245, 437
TatI WGTACW 1 cut(s) 556
TfiI GAWTC 5 cut(s) 289, 371, 491, 566, 665
TscAI CASTG 1 cut(s) 504
TseI GCWGC 1 cut(s) 640
TspDTI ATGAA 5 cut(s) 82, 204, 270, 534, 592
TspRI CASTG 1 cut(s) 504
VpaK11BI GGWCC 1 cut(s) 574
XapI RAATTY 1 cut(s) 245
XceI RCATGY 3 cut(s) 355, 462, 542
XcmI CCANNNNNNNNNTGG 1 cut(s) 364
XhoI CTCGAG 1 cut(s) 142
XmnI GAANNNNTTC 1 cut(s) 664
XspI CTAG 2 cut(s) 182, 344
Zsp2I ATGCAT 2 cut(s) 536, 622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.