Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

9023888 .. 9024379

Gene Structure 492 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031883

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGCACTAGAATACGCGTTATGGGGTCACTTAACCTACAAAGCAGATGTTTACAGTTTCGGAGTTGTTGCCTTGGAAATTGCCTGTCATTTGCAAGAAACTGGAAACTTCAAGGAGCTGGTTGATGAGAGGCTGGGGTATGAAGTCAATGACAAAGAAGCGGAAGTTATGTTTAAAGTTAGTATGTCATGTACAAATGTGTCTCCATCGCTTAGGCCTACAATGTCTGAGGTGGTGAGCATGCTTGAAGGAAGAATAGAAGTCCCAAACATGGCTACGGAATCAAGTACCAATCGTTTGAGGTTCAAGGCCATGAGAGATCTCCATGACCATAGGCAAACACATAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase_Tyr

Protein Analysis

117

Amino Acids

13.23

Weight (kDa)

5.48

Isoelectric Point (pI)

49.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	1 - 82	2.6e-07	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	17
AciI	CCGC	1 cut(s)	161
AfaI	GTAC	2 cut(s)	193, 289
AfiI	CCNNNNNNNGG	1 cut(s)	271
AflIII	ACRYGT	1 cut(s)	15
AgsI	TTSAA	3 cut(s)	112, 248, 307
AluBI	AGCT	1 cut(s)	118
AluI	AGCT	1 cut(s)	118
Alw26I	GTCTC	1 cut(s)	207
AoxI	GGCC	2 cut(s)	215, 309
AsuHPI	GGTGA	1 cut(s)	247
BccI	CCATC	1 cut(s)	214
BcoDI	GTCTC	1 cut(s)	207
BfaI	CTAG	1 cut(s)	8
BglII	AGATCT	1 cut(s)	319
Bpu10I	CCTNAGC	1 cut(s)	212
BsaJI	CCNNGG	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	1 cut(s)	271
Bse1I	ACTGG	1 cut(s)	106
BseDI	CCNNGG	1 cut(s)	72
BseLI	CCNNNNNNNGG	1 cut(s)	271
BseMII	CTCAG	1 cut(s)	219
BseNI	ACTGG	1 cut(s)	106
BseYI	CCCAGC	1 cut(s)	133
Bsh1236I	CGCG	1 cut(s)	17
BshFI	GGCC	2 cut(s)	217, 311
BslFI	GGGAC	1 cut(s)	248
BslI	CCNNNNNNNGG	1 cut(s)	271
BsmAI	GTCTC	1 cut(s)	207
BsmFI	GGGAC	1 cut(s)	248
BsnI	GGCC	2 cut(s)	217, 311
Bsp1407I	TGTACA	1 cut(s)	191
Bsp143I	GATC	1 cut(s)	319
BspACI	CCGC	1 cut(s)	161
BspANI	GGCC	2 cut(s)	217, 311
BspCNI	CTCAG	1 cut(s)	220
BspFNI	CGCG	1 cut(s)	17
BsrGI	TGTACA	1 cut(s)	191
BsrI	ACTGG	1 cut(s)	106
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	1 cut(s)	319
BssT1I	CCWWGG	1 cut(s)	72
Bst4CI	ACNGT	1 cut(s)	56
BstAUI	TGTACA	1 cut(s)	191
BstC8I	GCNNGC	1 cut(s)	242
BstDEI	CTNAG	2 cut(s)	212, 228
BstFNI	CGCG	1 cut(s)	17
BstKTI	GATC	1 cut(s)	322
BstMAI	GTCTC	1 cut(s)	207
BstMBI	GATC	1 cut(s)	319
BstNSI	RCATGY	1 cut(s)	244
BstUI	CGCG	1 cut(s)	17
BstX2I	RGATCY	1 cut(s)	319
BstYI	RGATCY	1 cut(s)	319
BsuRI	GGCC	2 cut(s)	217, 311
BtgZI	GCGATG	1 cut(s)	192
Cac8I	GCNNGC	1 cut(s)	242
Csp6I	GTAC	2 cut(s)	192, 288
CviAII	CATG	5 cut(s)	189, 241, 271, 313, 326
CviJI	RGCY	5 cut(s)	118, 133, 217, 275, 311
CviKI_1	RGCY	5 cut(s)	118, 133, 217, 275, 311
CviQI	GTAC	2 cut(s)	192, 288
DdeI	CTNAG	2 cut(s)	212, 228
DpnI	GATC	1 cut(s)	321
DpnII	GATC	1 cut(s)	319
DraI	TTTAAA	1 cut(s)	175
Eco130I	CCWWGG	1 cut(s)	72
Eco147I	AGGCCT	1 cut(s)	217
EcoT14I	CCWWGG	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	5 cut(s)	192, 244, 274, 316, 329
FaqI	GGGAC	1 cut(s)	248
FatI	CATG	5 cut(s)	188, 240, 270, 312, 325
FspBI	CTAG	1 cut(s)	8
GsaI	CCCAGC	1 cut(s)	137
HaeIII	GGCC	2 cut(s)	217, 311
Hin1II	CATG	5 cut(s)	192, 244, 274, 316, 329
HinfI	GANTC	1 cut(s)	281
HphI	GGTGA	1 cut(s)	247
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188I	TCNGA	2 cut(s)	62, 229
Hpy8I	GTNNAC	1 cut(s)	52
HpyAV	CCTTC	1 cut(s)	242
HpyCH4III	ACNGT	1 cut(s)	56
HpyCH4V	TGCA	1 cut(s)	94
HpyF3I	CTNAG	2 cut(s)	212, 228
Hsp92II	CATG	5 cut(s)	192, 244, 274, 316, 329
Kzo9I	GATC	1 cut(s)	319
LmnI	GCTCC	1 cut(s)	115
LpnPI	CCDG	4 cut(s)	87, 97, 104, 119
MaeI	CTAG	1 cut(s)	8
MaeIII	GTNAC	1 cut(s)	26
MalI	GATC	1 cut(s)	321
MboI	GATC	1 cut(s)	319
MboII	GAAGA	1 cut(s)	264
MflI	RGATCY	1 cut(s)	319
MluCI	AATT	1 cut(s)	78
MluI	ACGCGT	1 cut(s)	15
MnlI	CCTC	3 cut(s)	123, 223, 294
MseI	TTAA	2 cut(s)	32, 174
MvnI	CGCG	1 cut(s)	17
NdeII	GATC	1 cut(s)	319
NlaIII	CATG	5 cut(s)	192, 244, 274, 316, 329
NmuCI	GTSAC	1 cut(s)	26
NspI	RCATGY	1 cut(s)	244
PaeI	GCATGC	1 cut(s)	244
PceI	AGGCCT	1 cut(s)	217
PfeI	GAWTC	1 cut(s)	281
PspFI	CCCAGC	1 cut(s)	133
PsuI	RGATCY	1 cut(s)	319
RsaI	GTAC	2 cut(s)	193, 289
RsaNI	GTAC	2 cut(s)	192, 288
SaqAI	TTAA	2 cut(s)	32, 174
Sau3AI	GATC	1 cut(s)	319
SetI	ASST	4 cut(s)	38, 120, 234, 305
SphI	GCATGC	1 cut(s)	244
Sse9I	AATT	1 cut(s)	78
SseBI	AGGCCT	1 cut(s)	217
SsiI	CCGC	1 cut(s)	161
SspMI	CTAG	1 cut(s)	8
StuI	AGGCCT	1 cut(s)	217
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	1 cut(s)	56
TasI	AATT	1 cut(s)	78
TatI	WGTACW	1 cut(s)	191
TfiI	GAWTC	1 cut(s)	281
Tru1I	TTAA	2 cut(s)	32, 174
Tru9I	TTAA	2 cut(s)	32, 174
TseFI	GTSAC	1 cut(s)	26
Tsp45I	GTSAC	1 cut(s)	26
TspDTI	ATGAA	1 cut(s)	156
TspGWI	ACGGA	1 cut(s)	293
XceI	RCATGY	1 cut(s)	244
XspI	CTAG	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.