RLG00000033095

LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
N/A
Physical Location & Seq
Forward (+)
23257981 .. 23262060
4080 bp
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UTR
Exon/CDS
Intron
RLM00000033095

Sequence Viewer

Length: 336 bp
ATGGAATTAGTTTCATTGGGGAAAGCACCGAAGGCTTCCCTTCTTCTGTTCCTCACTGAAAGGGTGTTCCCTAGTCTGAAGCCCCTCCATGTTACATTGCATGTCAAAGTTAATAAATCAATGTTTGATGTTTTGTCCAACTGCCCGATACTTGAAGATTTGACTATGGACGGTTCTCTTCAAGGCATGAATCCCTTGAGTTTAATAATTGCTGCCCCTGTCGCCTGTTGTCTTCAAGAAGGCTCTAATCTTGACGAGGGATCAGAGTATGAAGAAGGCTCTAAGCATGAAGAGGGGTCAGAGAATGAACAAGGGTCAGATCATGAAGAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

112

Amino Acids

12.1

Weight (kDa)

4.49

Isoelectric Point (pI)

53.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 268
AcuI CTGAAG 1 cut(s) 98
AgsI TTSAA 3 cut(s) 155, 182, 236
AlwI GGATC 1 cut(s) 268
ApeKI GCWGC 1 cut(s) 212
BbsI GAAGAC 1 cut(s) 224
BbvI GCAGC 1 cut(s) 199
BfaI CTAG 1 cut(s) 72
BisI GCNGC 1 cut(s) 213
BlsI GCNGC 1 cut(s) 214
BpiI GAAGAC 1 cut(s) 224
BpuEI CTTGAG 1 cut(s) 217
Bse3DI GCAATG 1 cut(s) 95
BseMI GCAATG 1 cut(s) 95
BseXI GCAGC 1 cut(s) 199
Bsp143I GATC 2 cut(s) 260, 319
BspHI TCATGA 1 cut(s) 322
BspPI GGATC 1 cut(s) 268
BsrDI GCAATG 1 cut(s) 95
BssMI GATC 2 cut(s) 260, 319
Bst4CI ACNGT 1 cut(s) 173
Bst6I CTCTTC 3 cut(s) 183, 285, 321
BstDEI CTNAG 1 cut(s) 282
BstKTI GATC 2 cut(s) 263, 322
BstMBI GATC 2 cut(s) 260, 319
BstMWI GCNNNNNNNGC 2 cut(s) 32, 221
BstNSI RCATGY 1 cut(s) 104
BstV1I GCAGC 1 cut(s) 199
BstV2I GAAGAC 1 cut(s) 224
BtsIMutI CAGTG 1 cut(s) 54
CciI TCATGA 1 cut(s) 322
CviAII CATG 5 cut(s) 89, 101, 187, 287, 323
CviJI RGCY 4 cut(s) 35, 82, 243, 279
CviKI_1 RGCY 4 cut(s) 35, 82, 243, 279
DdeI CTNAG 1 cut(s) 282
DpnI GATC 2 cut(s) 262, 321
DpnII GATC 2 cut(s) 260, 319
Eam1104I CTCTTC 3 cut(s) 183, 285, 321
EarI CTCTTC 3 cut(s) 183, 285, 321
Eco57I CTGAAG 1 cut(s) 98
FaeI CATG 5 cut(s) 92, 104, 190, 290, 326
FaiI YATR 7 cut(s) 90, 102, 167, 188, 270, 288, 324
FatI CATG 5 cut(s) 88, 100, 186, 286, 322
Fnu4HI GCNGC 1 cut(s) 213
Fsp4HI GCNGC 1 cut(s) 213
FspBI CTAG 1 cut(s) 72
GluI GCNGC 1 cut(s) 213
Hin1II CATG 5 cut(s) 92, 104, 190, 290, 326
HinfI GANTC 1 cut(s) 190
Hpy188I TCNGA 4 cut(s) 78, 265, 301, 319
Hpy188III TCNNGA 3 cut(s) 236, 251, 323
HpyAV CCTTC 4 cut(s) 25, 50, 233, 269
HpyCH4III ACNGT 1 cut(s) 173
HpyCH4V TGCA 1 cut(s) 100
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 221
HpyF3I CTNAG 1 cut(s) 282
Hsp92II CATG 5 cut(s) 92, 104, 190, 290, 326
Kzo9I GATC 2 cut(s) 260, 319
LpnPI CCDG 2 cut(s) 231, 238
Lsp1109I GCAGC 1 cut(s) 199
MaeI CTAG 1 cut(s) 72
MaeIII GTNAC 1 cut(s) 91
MalI GATC 2 cut(s) 262, 321
MboI GATC 2 cut(s) 260, 319
MboII GAAGA 6 cut(s) 35, 167, 170, 224, 284, 302
MluCI AATT 2 cut(s) 5, 207
MmeI TCCRAC 1 cut(s) 162
MnlI CCTC 5 cut(s) 62, 95, 250, 286, 322
MseI TTAA 2 cut(s) 111, 203
MwoI GCNNNNNNNGC 2 cut(s) 32, 221
NdeII GATC 2 cut(s) 260, 319
NlaIII CATG 5 cut(s) 92, 104, 190, 290, 326
NspI RCATGY 1 cut(s) 104
PagI TCATGA 1 cut(s) 322
PfeI GAWTC 1 cut(s) 190
PkrI GCNGC 1 cut(s) 214
SaqAI TTAA 2 cut(s) 111, 203
SatI GCNGC 1 cut(s) 213
Sau3AI GATC 2 cut(s) 260, 319
SmlI CTYRAG 1 cut(s) 196
SmoI CTYRAG 1 cut(s) 196
Sse9I AATT 2 cut(s) 5, 207
SspMI CTAG 1 cut(s) 72
TaaI ACNGT 1 cut(s) 173
TasI AATT 2 cut(s) 5, 207
TfiI GAWTC 1 cut(s) 190
Tru1I TTAA 2 cut(s) 111, 203
Tru9I TTAA 2 cut(s) 111, 203
TscAI CASTG 1 cut(s) 61
TseI GCWGC 1 cut(s) 212
TspDTI ATGAA 4 cut(s) 203, 285, 303, 321
TspRI CASTG 1 cut(s) 61
XceI RCATGY 1 cut(s) 104
XspI CTAG 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.