RLG00000033666

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
N/A
Physical Location & Seq
Reverse (-)
30419320 .. 30426240
6921 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033666

Sequence Viewer

Length: 1254 bp
ATGGCGGCCCACGCCGCCACCGCTGGACCTCCGCGCACCCAATCATCATCGACCAAGCCCTCTCTTGTCTCAACAAGCGAGAATTCCCTCTCAAGCTCCAGCTCATCGTCTTCCTTGAAGAATTCTCCAACCCGCTCTTCACATCCGACCCGGACTCCCTCTTCAGGCGACGAAGCCCCCGCCCGAGTATCTCCGGCCGAATCCGCTGCAGCGGCCAATCCCGTTGCCTGGCTCCCGGTCTTCACCTTCTCCGCCATCAAGCACCGCCGAGCCTCCTCCACTGCGGTCGTCACACCCGACTGCGCCGTCTGCCTCTCGAAGTTCGAGCACAACGACCAGCTCTGGCTACTCCCTCTCTGCTGTCACACCTTCCACGTATTATGCATCGACGCGTGGCTCCACTCCCAGCAGACTTGCCCGCTCTGTCGGTCGCCGATTTCCGCGTCCAACTCCGAGACATATATGCAGTTCGCAGAAGAAAGAGGAAAGAAGCTCGAATTTAAACAAAAGATGCGAATGTTGAACCCAGACATAGATATGTGGTTATATAAAAACGACCTTCCACCAAAGCTGAAGGCGGGAATCATGGAAAATGTACAAAAACACATCGAAGAGAACAAAGACGTTGATGTGGAGAATATACTCTCTATTCTTCCTTTTAAACATAAAAGACCAGTCTTGCAGTTTCTCCGCATGGCTTCGCTGAGAACAGTGCCAATGTTTGAAACAATGGACGAAAGAGTGCTGGAAGCATTGTCTGGCCATCTTAAGCGGGTGACATATAATGAGGACAGCTATATTATTTCCGAGGCAGAACCACTCGAGAAGATGCTCTTCATCACCCAAGGCTCTGCATGGTCCTACCCAACTAGTCGTACCAGCATTGTTGGAAGCACAATTGATTACTCAATCATTAAGTGCCTTAAGAAAGGTGATTTCTATGGGGATGAACTTCTGAGTTGGGCATTAAAACCTGCCCTATCTGATCAGTTTCCCATCTCGACTAGAATTGTCAAGTCCCAAACAAAAGTTGAAGGATTTGCTATTAGAGCTCACGACTTGAAGCGTGTCGTGTATGACTTTTGGTGGATTTTTAGCTCAAAGCTTGGTCACCTACAAGAGTTTGAGCGCGAGCACTTGGCAGCTTGTTCTATACAAGCATATCTACGCCGCAAACATGCAAGGAAAACAATCCAGATCGAGATGAAGAACTGGCGAAACCGGTTTTCCAAAATTAGATTTGACATTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans Pkinase_Tyr cNMP_binding

Protein Analysis

418

Amino Acids

47.28

Weight (kDa)

9.08

Isoelectric Point (pI)

54.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 100 - 143 6e-11 Ring finger domain
zf-RING_11 PF17123 100 - 129 4.6e-08 RING-like zinc finger
zf-rbx1 PF12678 114 - 143 6.5e-06 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 305
Acc36I ACCTGC 1 cut(s) 982
AccBSI CCGCTC 2 cut(s) 135, 421
AccII CGCG 4 cut(s) 34, 392, 443, 1131
AcoI YGGCCR 3 cut(s) 195, 213, 760
AcsI RAATTY 3 cut(s) 82, 121, 497
AcuI CTGAAG 2 cut(s) 147, 593
AfaI GTAC 2 cut(s) 597, 877
AfiI CCNNNNNNNGG 2 cut(s) 164, 228
AflII CTTAAG 2 cut(s) 767, 923
AflIII ACRYGT 1 cut(s) 390
AgeI ACCGGT 1 cut(s) 1221
AgsI TTSAA 5 cut(s) 118, 523, 725, 1034, 1063
AhlI ACTAGT 1 cut(s) 869
AjnI CCWGG 1 cut(s) 227
AjuI GAANNNNNNNTTGG 2 cut(s) 121, 153
Alw21I GWGCWC 3 cut(s) 330, 1054, 1137
Alw26I GTCTC 2 cut(s) 73, 449
Ama87I CYCGRG 2 cut(s) 183, 821
AoxI GGCC 4 cut(s) 6, 195, 213, 760
ApeKI GCWGC 3 cut(s) 206, 209, 1142
ApoI RAATTY 3 cut(s) 82, 121, 497
AsiGI ACCGGT 1 cut(s) 1221
AspLEI GCGC 3 cut(s) 36, 305, 1131
AspS9I GGNCC 3 cut(s) 7, 26, 858
AsuC2I CCSGG 2 cut(s) 151, 236
AsuHPI GGTGA 5 cut(s) 235, 787, 832, 944, 1103
AvaI CYCGRG 2 cut(s) 183, 821
AvaII GGWCC 2 cut(s) 26, 858
BalI TGGCCA 1 cut(s) 762
BanII GRGCYC 1 cut(s) 1054
BbsI GAAGAC 2 cut(s) 102, 232
Bbv12I GWGCWC 3 cut(s) 330, 1054, 1137
BbvI GCAGC 3 cut(s) 193, 221, 1154
BccI CCATC 3 cut(s) 263, 771, 1004
BceAI ACGGC 1 cut(s) 290
BcgI CGANNNNNNTGC 2 cut(s) 188, 222
BciT130I CCWGG 1 cut(s) 229
BclI TGATCA 1 cut(s) 985
BcnI CCSGG 2 cut(s) 151, 236
BcoDI GTCTC 2 cut(s) 73, 449
BcuI ACTAGT 1 cut(s) 869
BfaI CTAG 2 cut(s) 870, 1005
BfmI CTRYAG 1 cut(s) 207
BfrI CTTAAG 2 cut(s) 767, 923
BfuAI ACCTGC 1 cut(s) 982
BisI GCNGC 7 cut(s) 6, 15, 207, 210, 213, 1143, 1171
BlsI GCNGC 7 cut(s) 7, 16, 208, 211, 214, 1144, 1172
Bme1390I CCNGG 3 cut(s) 151, 229, 236
Bme18I GGWCC 2 cut(s) 26, 858
BmeT110I CYCGRG 2 cut(s) 183, 821
BmgT120I GGNCC 3 cut(s) 7, 26, 858
BmiI GGNNCC 2 cut(s) 233, 398
BmrFI CCNGG 3 cut(s) 151, 229, 236
BmsI GCATC 3 cut(s) 393, 501, 819
BpiI GAAGAC 2 cut(s) 102, 232
BpmI CTGGAG 1 cut(s) 82
BpuEI CTTGAG 1 cut(s) 76
BpuMI CCSGG 2 cut(s) 151, 236
BsaAI YACGTR 1 cut(s) 376
BsaJI CCNNGG 2 cut(s) 807, 844
BsaWI WCCGGW 1 cut(s) 1221
BsaXI ACNNNNNCTCC 2 cut(s) 139, 169
Bsc4I CCNNNNNNNGG 2 cut(s) 164, 228
Bse118I RCCGGY 1 cut(s) 1221
Bse1I ACTGG 2 cut(s) 674, 1217
BseBI CCWGG 1 cut(s) 229
BseDI CCNNGG 2 cut(s) 807, 844
BseGI GGATG 2 cut(s) 142, 952
BseLI CCNNNNNNNGG 2 cut(s) 164, 228
BseMII CTCAG 2 cut(s) 695, 947
BseNI ACTGG 2 cut(s) 674, 1217
BseRI GAGGAG 1 cut(s) 265
BseX3I CGGCCG 1 cut(s) 195
BseXI GCAGC 3 cut(s) 193, 221, 1154
BseYI CCCAGC 1 cut(s) 405
Bsh1236I CGCG 4 cut(s) 34, 392, 443, 1131
Bsh1285I CGRYCG 3 cut(s) 198, 288, 431
BshFI GGCC 4 cut(s) 8, 197, 215, 762
BshTI ACCGGT 1 cut(s) 1221
BsiEI CGRYCG 3 cut(s) 198, 288, 431
BsiHKAI GWGCWC 3 cut(s) 330, 1054, 1137
BsiHKCI CYCGRG 2 cut(s) 183, 821
BsiSI CCGG 4 cut(s) 151, 194, 236, 1222
BslFI GGGAC 1 cut(s) 1003
BslI CCNNNNNNNGG 2 cut(s) 164, 228
BsmAI GTCTC 2 cut(s) 73, 449
BsmFI GGGAC 1 cut(s) 1003
BsnI GGCC 4 cut(s) 8, 197, 215, 762
BsoBI CYCGRG 2 cut(s) 183, 821
Bsp1286I GDGCHC 3 cut(s) 330, 1054, 1137
Bsp1407I TGTACA 1 cut(s) 595
Bsp143I GATC 2 cut(s) 985, 1197
BspANI GGCC 4 cut(s) 8, 197, 215, 762
BspCNI CTCAG 2 cut(s) 696, 948
BspFNI CGCG 4 cut(s) 34, 392, 443, 1131
BspLI GGNNCC 2 cut(s) 233, 398
BspMAI CTGCAG 1 cut(s) 211
BspMI ACCTGC 1 cut(s) 982
BspQI GCTCTTC 2 cut(s) 142, 839
BspTI CTTAAG 2 cut(s) 767, 923
BsrBI CCGCTC 2 cut(s) 135, 421
BsrFI RCCGGY 1 cut(s) 1221
BsrGI TGTACA 1 cut(s) 595
BsrI ACTGG 2 cut(s) 674, 1217
BssAI RCCGGY 1 cut(s) 1221
BssECI CCNNGG 2 cut(s) 807, 844
BssMI GATC 2 cut(s) 985, 1197
BssT1I CCWWGG 1 cut(s) 844
Bst2UI CCWGG 1 cut(s) 229
Bst4CI ACNGT 1 cut(s) 712
Bst6I CTCTTC 4 cut(s) 142, 166, 606, 839
BstAFI CTTAAG 2 cut(s) 767, 923
BstAUI TGTACA 1 cut(s) 595
BstBAI YACGTR 1 cut(s) 376
BstC8I GCNNGC 2 cut(s) 419, 1133
BstDEI CTNAG 2 cut(s) 704, 956
BstEII GGTNACC 1 cut(s) 1109
BstF5I GGATG 2 cut(s) 142, 952
BstFNI CGCG 4 cut(s) 34, 392, 443, 1131
BstHHI GCGC 3 cut(s) 36, 305, 1131
BstKTI GATC 2 cut(s) 988, 1200
BstMAI GTCTC 2 cut(s) 73, 449
BstMBI GATC 2 cut(s) 985, 1197
BstMCI CGRYCG 3 cut(s) 198, 288, 431
BstMWI GCNNNNNNNGC 7 cut(s) 11, 14, 20, 203, 212, 309, 1049
BstNI CCWGG 1 cut(s) 229
BstNSI RCATGY 1 cut(s) 1181
BstPI GGTNACC 1 cut(s) 1109
BstSCI CCNGG 3 cut(s) 149, 227, 234
BstSFI CTRYAG 1 cut(s) 207
BstUI CGCG 4 cut(s) 34, 392, 443, 1131
BstV1I GCAGC 3 cut(s) 193, 221, 1154
BstV2I GAAGAC 2 cut(s) 102, 232
BstZI CGGCCG 1 cut(s) 195
BsuRI GGCC 4 cut(s) 8, 197, 215, 762
BtsCI GGATG 2 cut(s) 142, 952
BtsI GCAGTG 1 cut(s) 279
BtsIMutI CAGTG 2 cut(s) 279, 717
BveI ACCTGC 1 cut(s) 982
Cac8I GCNNGC 2 cut(s) 419, 1133
CfoI GCGC 3 cut(s) 36, 305, 1131
Cfr10I RCCGGY 1 cut(s) 1221
Cfr13I GGNCC 3 cut(s) 7, 26, 858
CseI GACGC 2 cut(s) 398, 432
Csp6I GTAC 2 cut(s) 596, 876
CspAI ACCGGT 1 cut(s) 1221
CviAII CATG 4 cut(s) 586, 694, 855, 1178
CviQI GTAC 2 cut(s) 596, 876
DdeI CTNAG 2 cut(s) 704, 956
DpnI GATC 2 cut(s) 987, 1199
DpnII GATC 2 cut(s) 985, 1197
DraI TTTAAA 2 cut(s) 502, 661
DrdI GACNNNNNNGTC 1 cut(s) 305
DseDI GACNNNNNNGTC 1 cut(s) 305
EaeI YGGCCR 3 cut(s) 195, 213, 760
EagI CGGCCG 1 cut(s) 195
Eam1104I CTCTTC 4 cut(s) 142, 166, 606, 839
EarI CTCTTC 4 cut(s) 142, 166, 606, 839
EciI GGCGGA 1 cut(s) 241
Ecl136II GAGCTC 1 cut(s) 1052
EclXI CGGCCG 1 cut(s) 195
Eco130I CCWWGG 1 cut(s) 844
Eco24I GRGCYC 1 cut(s) 1054
Eco47I GGWCC 2 cut(s) 26, 858
Eco52I CGGCCG 1 cut(s) 195
Eco53kI GAGCTC 1 cut(s) 1052
Eco57I CTGAAG 2 cut(s) 147, 593
Eco88I CYCGRG 2 cut(s) 183, 821
Eco91I GGTNACC 1 cut(s) 1109
EcoICRI GAGCTC 1 cut(s) 1052
EcoO65I GGTNACC 1 cut(s) 1109
EcoRI GAATTC 2 cut(s) 82, 121
EcoRII CCWGG 1 cut(s) 227
EcoT14I CCWWGG 1 cut(s) 844
EcoT22I ATGCAT 1 cut(s) 386
EcoT38I GRGCYC 1 cut(s) 1054
ErhI CCWWGG 1 cut(s) 844
FaeI CATG 4 cut(s) 589, 697, 858, 1181
FalI AAGNNNNNCTT 2 cut(s) 818, 850
FaqI GGGAC 1 cut(s) 1003
FatI CATG 4 cut(s) 585, 693, 854, 1177
FauI CCCGC 5 cut(s) 140, 187, 426, 571, 765
FbaI TGATCA 1 cut(s) 985
Fnu4HI GCNGC 7 cut(s) 6, 15, 207, 210, 213, 1143, 1171
FokI GGATG 2 cut(s) 129, 959
FriOI GRGCYC 1 cut(s) 1054
Fsp4HI GCNGC 7 cut(s) 6, 15, 207, 210, 213, 1143, 1171
FspBI CTAG 2 cut(s) 870, 1005
GlaI GCGC 3 cut(s) 35, 304, 1130
GluI GCNGC 7 cut(s) 6, 15, 207, 210, 213, 1143, 1171
GsaI CCCAGC 1 cut(s) 409
GsuI CTGGAG 1 cut(s) 82
HaeIII GGCC 4 cut(s) 8, 197, 215, 762
HapII CCGG 4 cut(s) 151, 194, 236, 1222
HgaI GACGC 2 cut(s) 398, 432
HhaI GCGC 3 cut(s) 36, 305, 1131
Hin1II CATG 4 cut(s) 589, 697, 858, 1181
Hin6I GCGC 3 cut(s) 34, 303, 1129
HinP1I GCGC 3 cut(s) 34, 303, 1129
HindIII AAGCTT 1 cut(s) 1103
HinfI GANTC 3 cut(s) 154, 200, 582
HpaII CCGG 4 cut(s) 151, 194, 236, 1222
HphI GGTGA 5 cut(s) 235, 787, 832, 944, 1103
Hpy188I TCNGA 5 cut(s) 147, 454, 808, 957, 985
Hpy188III TCNNGA 6 cut(s) 316, 823, 1000, 1055, 1195, 1201
Hpy99I CGWCG 2 cut(s) 173, 392
HpyAV CCTTC 5 cut(s) 256, 379, 568, 569, 1028
HpyCH4III ACNGT 1 cut(s) 712
HpyCH4IV ACGT 2 cut(s) 375, 624
HpyCH4V TGCA 6 cut(s) 209, 384, 466, 682, 854, 1181
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 14, 20, 203, 212, 309, 1049
HpyF3I CTNAG 2 cut(s) 704, 956
HpySE526I ACGT 2 cut(s) 375, 624
Hsp92II CATG 4 cut(s) 589, 697, 858, 1181
HspAI GCGC 3 cut(s) 34, 303, 1129
Ksp22I TGATCA 1 cut(s) 985
Kzo9I GATC 2 cut(s) 985, 1197
LguI GCTCTTC 2 cut(s) 142, 839
LmnI GCTCC 3 cut(s) 101, 237, 402
Lsp1109I GCAGC 3 cut(s) 193, 221, 1154
LweI GCATC 3 cut(s) 393, 501, 819
MaeI CTAG 2 cut(s) 870, 1005
MaeII ACGT 2 cut(s) 375, 624
MaeIII GTNAC 4 cut(s) 289, 362, 775, 1109
MalI GATC 2 cut(s) 987, 1199
MbiI CCGCTC 2 cut(s) 135, 421
MboI GATC 2 cut(s) 985, 1197
MfeI CAATTG 1 cut(s) 897
MhlI GDGCHC 3 cut(s) 330, 1054, 1137
MlsI TGGCCA 1 cut(s) 762
MluCI AATT 6 cut(s) 82, 121, 497, 897, 1008, 1233
MluI ACGCGT 1 cut(s) 390
MluNI TGGCCA 1 cut(s) 762
MlyI GAGTC 1 cut(s) 148
MmeI TCCRAC 4 cut(s) 152, 170, 471, 868
Mox20I TGGCCA 1 cut(s) 762
Mph1103I ATGCAT 1 cut(s) 386
MscI TGGCCA 1 cut(s) 762
MseI TTAA 6 cut(s) 501, 660, 768, 915, 924, 968
MslI CAYNNNNRTG 1 cut(s) 536
Msp20I TGGCCA 1 cut(s) 762
MspA1I CMGCKG 3 cut(s) 23, 206, 212
MspCI CTTAAG 2 cut(s) 767, 923
MspI CCGG 4 cut(s) 151, 194, 236, 1222
MspR9I CCNGG 3 cut(s) 151, 229, 236
MunI CAATTG 1 cut(s) 897
MvaI CCWGG 1 cut(s) 229
MvnI CGCG 4 cut(s) 34, 392, 443, 1131
MwoI GCNNNNNNNGC 7 cut(s) 11, 14, 20, 203, 212, 309, 1049
NciI CCSGG 2 cut(s) 151, 236
NdeII GATC 2 cut(s) 985, 1197
NlaIII CATG 4 cut(s) 589, 697, 858, 1181
NlaIV GGNNCC 2 cut(s) 233, 398
NmeAIII GCCGAG 1 cut(s) 293
NmuCI GTSAC 4 cut(s) 289, 362, 775, 1109
NsiI ATGCAT 1 cut(s) 386
NspI RCATGY 1 cut(s) 1181
PaeR7I CTCGAG 1 cut(s) 821
PciSI GCTCTTC 2 cut(s) 142, 839
PcsI WCGNNNNNNNCGW 2 cut(s) 294, 330
PfeI GAWTC 2 cut(s) 200, 582
PinAI ACCGGT 1 cut(s) 1221
PkrI GCNGC 7 cut(s) 7, 16, 208, 211, 214, 1144, 1172
PleI GAGTC 1 cut(s) 148
PpsI GAGTC 1 cut(s) 148
Ppu21I YACGTR 1 cut(s) 376
Psp124BI GAGCTC 1 cut(s) 1054
Psp6I CCWGG 1 cut(s) 227
PspEI GGTNACC 1 cut(s) 1109
PspFI CCCAGC 1 cut(s) 405
PspGI CCWGG 1 cut(s) 227
PspN4I GGNNCC 2 cut(s) 233, 398
PspPI GGNCC 3 cut(s) 7, 26, 858
PstI CTGCAG 1 cut(s) 211
RsaI GTAC 2 cut(s) 597, 877
RsaNI GTAC 2 cut(s) 596, 876
RseI CAYNNNNRTG 1 cut(s) 536
SacI GAGCTC 1 cut(s) 1054
SapI GCTCTTC 2 cut(s) 142, 839
SaqAI TTAA 6 cut(s) 501, 660, 768, 915, 924, 968
SatI GCNGC 7 cut(s) 6, 15, 207, 210, 213, 1143, 1171
Sau3AI GATC 2 cut(s) 985, 1197
Sau96I GGNCC 3 cut(s) 7, 26, 858
SchI GAGTC 1 cut(s) 148
ScrFI CCNGG 3 cut(s) 151, 229, 236
SduI GDGCHC 3 cut(s) 330, 1054, 1137
SfaNI GCATC 3 cut(s) 393, 501, 819
SfcI CTRYAG 1 cut(s) 207
Sfr274I CTCGAG 1 cut(s) 821
SinI GGWCC 2 cut(s) 26, 858
SlaI CTCGAG 1 cut(s) 821
SmiMI CAYNNNNRTG 1 cut(s) 536
SmlI CTYRAG 4 cut(s) 91, 767, 821, 923
SmoI CTYRAG 4 cut(s) 91, 767, 821, 923
SpeI ACTAGT 1 cut(s) 869
Sse9I AATT 6 cut(s) 82, 121, 497, 897, 1008, 1233
SspMI CTAG 2 cut(s) 870, 1005
SstI GAGCTC 1 cut(s) 1054
StyD4I CCNGG 3 cut(s) 149, 227, 234
StyI CCWWGG 1 cut(s) 844
TaaI ACNGT 1 cut(s) 712
TaiI ACGT 2 cut(s) 378, 627
TaqI TCGA 9 cut(s) 50, 317, 324, 387, 495, 609, 822, 1001, 1200
TaqII GACCGA 1 cut(s) 417
TasI AATT 6 cut(s) 82, 121, 497, 897, 1008, 1233
TatI WGTACW 1 cut(s) 595
TauI GCSGC 4 cut(s) 8, 17, 215, 1173
TfiI GAWTC 2 cut(s) 200, 582
Tru1I TTAA 6 cut(s) 501, 660, 768, 915, 924, 968
Tru9I TTAA 6 cut(s) 501, 660, 768, 915, 924, 968
TscAI CASTG 2 cut(s) 286, 717
TseFI GTSAC 4 cut(s) 289, 362, 775, 1109
TseI GCWGC 3 cut(s) 206, 209, 1142
Tsp45I GTSAC 4 cut(s) 289, 362, 775, 1109
TspDTI ATGAA 3 cut(s) 826, 963, 1220
TspRI CASTG 2 cut(s) 286, 717
Vha464I CTTAAG 2 cut(s) 767, 923
VpaK11BI GGWCC 2 cut(s) 26, 858
XapI RAATTY 3 cut(s) 82, 121, 497
XceI RCATGY 1 cut(s) 1181
XhoI CTCGAG 1 cut(s) 821
XspI CTAG 2 cut(s) 870, 1005
Zsp2I ATGCAT 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.