Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

31141788 .. 31143104

Gene Structure 1317 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033703

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGCATCAGTGCCTAGAGATTTCTCCGATCAATGCGAACTCTATCATTGGTAACAATCCACTATGTCACTGTCTACAAGGATTCACGCCTAAGTCACCAGACAAATGGAATTTGACTGACTGGTCACTTGGATGTATGCGAAACAATCCCCTAAGCTACCAGGAAAGTGATAAAGACGGATTTGTCAAGATCACTAACTCGAAATTGCCGGATAGTACACTAACACATTCTTGGGTGAACAAAAGTATGAACATCAAGGAATGCAAACCCAAATGCTTGAACAACTGTTCCTGTACGGCTTATACAAGCTCGGATATCAGAGCAGGAGGTTCTGGCTGCGCCATTTCATTTGGTGATCTACTAGATATCAGAAAGTTTCCGGATGCTGGCCAGGATCTATACATTCGAATGTCGGCTTCAGAGATAAAAGATGACAGTAAAGTAAAGACAGGAATTATAGTTGCTGTTGTGATAGCCGCAGTGTTTTCAGGAATGCTCTTAGTTGGCTACTCCGTCTACCGAAGCAGGACCAAATTGAAAGATGGACAAGAATTTGCTGTGAAGAGGCTTTCAAGCAGTTCCGGCCAAGGATTTAAAGAGTTCATGAATGAAATTATAATGATTGCCAAACTTCAGCACCGAAATCTTTACAAGATTTTGGTTGTTGCGTGTAAGAAGTGGAGAAAATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0030054 GO:0031625 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

231

Amino Acids

25.59

Weight (kDa)

9.16

Isoelectric Point (pI)

44.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAN_2	PF08276	56 - 123	1.7e-19	PAN-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	617
AasI	GACNNNNNNGTC	2 cut(s)	121, 182
AccI	GTMKAC	2 cut(s)	73, 516
AccIII	TCCGGA	1 cut(s)	379
AciI	CCGC	1 cut(s)	477
AclWI	GGATC	1 cut(s)	402
AcoI	YGGCCR	2 cut(s)	388, 583
AcsI	RAATTY	2 cut(s)	109, 551
AcuI	CTGAAG	2 cut(s)	402, 617
AfaI	GTAC	2 cut(s)	217, 295
AfiI	CCNNNNNNNGG	1 cut(s)	386
AgsI	TTSAA	3 cut(s)	280, 538, 573
AjnI	CCWGG	2 cut(s)	159, 390
AloI	GAACNNNNNNTCC	2 cut(s)	272, 304
AluBI	AGCT	2 cut(s)	156, 309
AluI	AGCT	2 cut(s)	156, 309
AlwI	GGATC	1 cut(s)	402
Aor13HI	TCCGGA	1 cut(s)	379
AoxI	GGCC	2 cut(s)	388, 583
ApeKI	GCWGC	1 cut(s)	336
ApoI	RAATTY	2 cut(s)	109, 551
AspLEI	GCGC	1 cut(s)	341
AspS9I	GGNCC	1 cut(s)	528
AsuHPI	GGTGA	3 cut(s)	87, 247, 365
AsuII	TTCGAA	1 cut(s)	406
AvaII	GGWCC	1 cut(s)	528
BalI	TGGCCA	1 cut(s)	390
BbvI	GCAGC	1 cut(s)	323
BccI	CCATC	1 cut(s)	536
BceAI	ACGGC	1 cut(s)	312
BciT130I	CCWGG	2 cut(s)	161, 392
BfaI	CTAG	2 cut(s)	14, 362
BisI	GCNGC	2 cut(s)	337, 477
BlsI	GCNGC	2 cut(s)	338, 478
Bme1390I	CCNGG	2 cut(s)	161, 392
Bme18I	GGWCC	1 cut(s)	528
BmgT120I	GGNCC	1 cut(s)	528
BmrFI	CCNGG	2 cut(s)	161, 392
BmsI	GCATC	2 cut(s)	13, 373
Bpu10I	CCTNAGC	1 cut(s)	152
Bpu14I	TTCGAA	1 cut(s)	406
BsaJI	CCNNGG	1 cut(s)	586
BsaWI	WCCGGW	1 cut(s)	379
Bsc4I	CCNNNNNNNGG	1 cut(s)	386
Bse1I	ACTGG	1 cut(s)	125
BseAI	TCCGGA	1 cut(s)	379
BseBI	CCWGG	2 cut(s)	161, 392
BseDI	CCNNGG	1 cut(s)	586
BseGI	GGATG	2 cut(s)	137, 388
BseLI	CCNNNNNNNGG	1 cut(s)	386
BseNI	ACTGG	1 cut(s)	125
BseXI	GCAGC	1 cut(s)	323
BshFI	GGCC	2 cut(s)	390, 585
BsiSI	CCGG	3 cut(s)	209, 380, 582
BslI	CCNNNNNNNGG	1 cut(s)	386
BsmI	GAATGC	2 cut(s)	266, 498
BsnI	GGCC	2 cut(s)	390, 585
Bsp119I	TTCGAA	1 cut(s)	406
Bsp13I	TCCGGA	1 cut(s)	379
Bsp143I	GATC	4 cut(s)	27, 189, 355, 394
BspACI	CCGC	1 cut(s)	477
BspANI	GGCC	2 cut(s)	390, 585
BspEI	TCCGGA	1 cut(s)	379
BspHI	TCATGA	1 cut(s)	603
BspPI	GGATC	1 cut(s)	402
BspT104I	TTCGAA	1 cut(s)	406
BsrI	ACTGG	1 cut(s)	125
BssECI	CCNNGG	1 cut(s)	586
BssMI	GATC	4 cut(s)	27, 189, 355, 394
BssT1I	CCWWGG	1 cut(s)	586
Bst2UI	CCWGG	2 cut(s)	161, 392
Bst4CI	ACNGT	3 cut(s)	71, 287, 437
Bst6I	CTCTTC	1 cut(s)	557
BstBI	TTCGAA	1 cut(s)	406
BstC8I	GCNNGC	1 cut(s)	388
BstDEI	CTNAG	3 cut(s)	90, 152, 499
BstF5I	GGATG	2 cut(s)	137, 388
BstHHI	GCGC	1 cut(s)	341
BstKTI	GATC	4 cut(s)	30, 192, 358, 397
BstMBI	GATC	4 cut(s)	27, 189, 355, 394
BstMWI	GCNNNNNNNGC	1 cut(s)	582
BstNI	CCWGG	2 cut(s)	161, 392
BstSCI	CCNGG	2 cut(s)	159, 390
BstV1I	GCAGC	1 cut(s)	323
BstX2I	RGATCY	1 cut(s)	394
BstXI	CCANNNNNNTGG	1 cut(s)	105
BstYI	RGATCY	1 cut(s)	394
BsuRI	GGCC	2 cut(s)	390, 585
BtsCI	GGATG	2 cut(s)	137, 388
BtsI	GCAGTG	1 cut(s)	486
BtsIMutI	CAGTG	3 cut(s)	14, 67, 486
Cac8I	GCNNGC	1 cut(s)	388
CciI	TCATGA	1 cut(s)	603
CfoI	GCGC	1 cut(s)	341
Cfr13I	GGNCC	1 cut(s)	528
Csp6I	GTAC	2 cut(s)	216, 294
CviAII	CATG	1 cut(s)	604
CviQI	GTAC	2 cut(s)	216, 294
DdeI	CTNAG	3 cut(s)	90, 152, 499
DpnI	GATC	4 cut(s)	29, 191, 357, 396
DpnII	GATC	4 cut(s)	27, 189, 355, 394
DraI	TTTAAA	1 cut(s)	595
DrdI	GACNNNNNNGTC	2 cut(s)	121, 182
DseDI	GACNNNNNNGTC	2 cut(s)	121, 182
EaeI	YGGCCR	2 cut(s)	388, 583
Eam1104I	CTCTTC	1 cut(s)	557
EarI	CTCTTC	1 cut(s)	557
Eco130I	CCWWGG	1 cut(s)	586
Eco32I	GATATC	2 cut(s)	316, 367
Eco47I	GGWCC	1 cut(s)	528
Eco57I	CTGAAG	2 cut(s)	402, 617
EcoRII	CCWGG	2 cut(s)	159, 390
EcoRV	GATATC	2 cut(s)	316, 367
EcoT14I	CCWWGG	1 cut(s)	586
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	586
FaeI	CATG	1 cut(s)	607
FaiI	YATR	8 cut(s)	64, 137, 248, 303, 400, 458, 605, 617
FatI	CATG	1 cut(s)	603
FblI	GTMKAC	2 cut(s)	73, 516
Fnu4HI	GCNGC	2 cut(s)	337, 477
FokI	GGATG	2 cut(s)	144, 395
Fsp4HI	GCNGC	2 cut(s)	337, 477
FspBI	CTAG	2 cut(s)	14, 362
GlaI	GCGC	1 cut(s)	340
GluI	GCNGC	2 cut(s)	337, 477
HaeIII	GGCC	2 cut(s)	390, 585
HapII	CCGG	3 cut(s)	209, 380, 582
HhaI	GCGC	1 cut(s)	341
Hin1II	CATG	1 cut(s)	607
Hin6I	GCGC	1 cut(s)	339
HinP1I	GCGC	1 cut(s)	339
HinfI	GANTC	1 cut(s)	81
HpaII	CCGG	3 cut(s)	209, 380, 582
HphI	GGTGA	3 cut(s)	87, 247, 365
Hpy166II	GTNNAC	4 cut(s)	74, 218, 238, 517
Hpy188I	TCNGA	5 cut(s)	27, 313, 320, 371, 421
Hpy188III	TCNNGA	4 cut(s)	187, 380, 489, 604
Hpy8I	GTNNAC	4 cut(s)	74, 218, 238, 517
HpyCH4III	ACNGT	3 cut(s)	71, 287, 437
HpyCH4V	TGCA	2 cut(s)	4, 264
HpyF10VI	GCNNNNNNNGC	1 cut(s)	582
HpyF3I	CTNAG	3 cut(s)	90, 152, 499
Hsp92II	CATG	1 cut(s)	607
HspAI	GCGC	1 cut(s)	339
Kpn2I	TCCGGA	1 cut(s)	379
Kzo9I	GATC	4 cut(s)	27, 189, 355, 394
Lsp1109I	GCAGC	1 cut(s)	323
LweI	GCATC	2 cut(s)	13, 373
MaeI	CTAG	2 cut(s)	14, 362
MaeIII	GTNAC	4 cut(s)	50, 65, 93, 123
MalI	GATC	4 cut(s)	29, 191, 357, 396
MboI	GATC	4 cut(s)	27, 189, 355, 394
MboII	GAAGA	1 cut(s)	574
MflI	RGATCY	1 cut(s)	394
MlsI	TGGCCA	1 cut(s)	390
MluCI	AATT	6 cut(s)	109, 203, 453, 533, 551, 612
MluNI	TGGCCA	1 cut(s)	390
MnlI	CCTC	2 cut(s)	320, 558
Mox20I	TGGCCA	1 cut(s)	390
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	379
MscI	TGGCCA	1 cut(s)	390
MseI	TTAA	1 cut(s)	594
MslI	CAYNNNNRTG	2 cut(s)	130, 407
Msp20I	TGGCCA	1 cut(s)	390
MspI	CCGG	3 cut(s)	209, 380, 582
MspR9I	CCNGG	2 cut(s)	161, 392
Mva1269I	GAATGC	2 cut(s)	266, 498
MvaI	CCWGG	2 cut(s)	161, 392
MwoI	GCNNNNNNNGC	1 cut(s)	582
NdeII	GATC	4 cut(s)	27, 189, 355, 394
NlaIII	CATG	1 cut(s)	607
NmuCI	GTSAC	3 cut(s)	65, 93, 123
NsiI	ATGCAT	1 cut(s)	6
NspV	TTCGAA	1 cut(s)	406
PagI	TCATGA	1 cut(s)	603
PctI	GAATGC	2 cut(s)	266, 498
PfeI	GAWTC	1 cut(s)	81
PkrI	GCNGC	2 cut(s)	338, 478
PsiI	TTATAA	1 cut(s)	617
Psp6I	CCWGG	2 cut(s)	159, 390
PspGI	CCWGG	2 cut(s)	159, 390
PspPI	GGNCC	1 cut(s)	528
PsuI	RGATCY	1 cut(s)	394
RsaI	GTAC	2 cut(s)	217, 295
RsaNI	GTAC	2 cut(s)	216, 294
RseI	CAYNNNNRTG	2 cut(s)	130, 407
SaqAI	TTAA	1 cut(s)	594
SatI	GCNGC	2 cut(s)	337, 477
Sau3AI	GATC	4 cut(s)	27, 189, 355, 394
Sau96I	GGNCC	1 cut(s)	528
ScrFI	CCNGG	2 cut(s)	161, 392
SetI	ASST	3 cut(s)	158, 311, 331
SfaNI	GCATC	2 cut(s)	13, 373
SfuI	TTCGAA	1 cut(s)	406
SinI	GGWCC	1 cut(s)	528
SmiMI	CAYNNNNRTG	2 cut(s)	130, 407
Sse9I	AATT	6 cut(s)	109, 203, 453, 533, 551, 612
SsiI	CCGC	1 cut(s)	477
SspMI	CTAG	2 cut(s)	14, 362
StyD4I	CCNGG	2 cut(s)	159, 390
StyI	CCWWGG	1 cut(s)	586
TaaI	ACNGT	3 cut(s)	71, 287, 437
TaqI	TCGA	2 cut(s)	200, 406
TasI	AATT	6 cut(s)	109, 203, 453, 533, 551, 612
TatI	WGTACW	1 cut(s)	215
TauI	GCSGC	1 cut(s)	479
TfiI	GAWTC	1 cut(s)	81
Tru1I	TTAA	1 cut(s)	594
Tru9I	TTAA	1 cut(s)	594
TscAI	CASTG	3 cut(s)	14, 74, 486
TseFI	GTSAC	3 cut(s)	65, 93, 123
TseI	GCWGC	1 cut(s)	336
Tsp45I	GTSAC	3 cut(s)	65, 93, 123
TspDTI	ATGAA	5 cut(s)	263, 336, 592, 620, 624
TspGWI	ACGGA	2 cut(s)	192, 502
TspRI	CASTG	3 cut(s)	14, 74, 486
VpaK11BI	GGWCC	1 cut(s)	528
XapI	RAATTY	2 cut(s)	109, 551
XmiI	GTMKAC	2 cut(s)	73, 516
XspI	CTAG	2 cut(s)	14, 362
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.