Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

34736375 .. 34737434

Gene Structure 1060 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033959

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGATCTTGACCAATTGGTCTACCAACACCCCTACTTGCACTTGGGTTGGCGTTACTTATGGCGCAAACCACTTCAGAGTTGCAGTCTTGAACCTCTCTTACATGGGACTCACAGGCACTATTCCTCCGGATCTTGGCAACCTCTCATTTCTTGTTGAGCTGCGTTTCACCAATAACAGTTTTCATGGTCACTTGCCTGAAGAATTGGCTCGTTTGCACCAGTTAAAGTTGATTGGCTTAGCATACAACAGCTTTAGCGGACTCATTCCATCATGGTTCGGGTCCTTGTCCAAACTTCAAACGTTCAATTTGACTGGTAATCAGTTTTCAGGTTCCAGACCCTCTGCCATTTTCAACTTATCTGCATTGGAAGTCATTAATTTGAGCCATAACCAACTATCAGAAATTCCAAACGAAATTGGCACTTTGAATCAGCTCGAGAAGTTGTATGTGCAGCTCAATTCCCTAATGGGGCATGTTCCTATAGCTATCTTCAACATATCTTCTTTGACTACGTTGACTTTTTATGGAAACAACTTGAGCGGTAGTCTTTCAAATAATATATGCCAACATCTTCTTAGCATTCAAGTGTTGGATTTTTCTTACAACCAGTTTCATGGTCCACTTCCATCCAAATGTTGGCAATGCAAACGACTTCTTCAGTTAGGATTGTCGAATAACAATTTCAGTGGAAGTATACCTAACAATATTGGGAACTTAACCCAAACAAAGGCGATATACCTTGACATAAATCATCTGACAGGTACTGGCCCGATAAACTTCAACTTCAACTTGATTCTATATTGTACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04016 ko04064 ko04620 ko04621 ko04624 ko04626 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04016 map04064 map04620 map04621 map04624 map04626 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

271

Amino Acids

29.88

Weight (kDa)

7.72

Isoelectric Point (pI)

23.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	51 - 109	3.9e-06	Leucine rich repeat
LRR_8	PF13855	107 - 156	3.7e-07	Leucine rich repeat
LRR_14	PF23598	114 - 175	9.8e-06	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	16
AccB7I	CCANNNNNTGG	1 cut(s)	639
AccBSI	CCGCTC	1 cut(s)	543
AccI	GTMKAC	2 cut(s)	20, 697
AccIII	TCCGGA	1 cut(s)	127
AciI	CCGC	2 cut(s)	258, 543
AclI	AACGTT	1 cut(s)	302
AclWI	GGATC	1 cut(s)	138
AcsI	RAATTY	1 cut(s)	405
AcuI	CTGAAG	3 cut(s)	58, 219, 644
AfaI	GTAC	2 cut(s)	766, 808
AfiI	CCNNNNNNNGG	4 cut(s)	134, 471, 639, 730
AluBI	AGCT	5 cut(s)	160, 252, 436, 457, 488
AluI	AGCT	5 cut(s)	160, 252, 436, 457, 488
AlwI	GGATC	1 cut(s)	138
AlwNI	CAGNNNCTG	1 cut(s)	767
Ama87I	CYCGRG	1 cut(s)	437
Aor13HI	TCCGGA	1 cut(s)	127
AoxI	GGCC	1 cut(s)	769
ApeKI	GCWGC	2 cut(s)	160, 454
ApoI	RAATTY	1 cut(s)	405
AseI	ATTAAT	1 cut(s)	378
AspLEI	GCGC	1 cut(s)	65
AspS9I	GGNCC	3 cut(s)	282, 620, 770
AsuHPI	GGTGA	1 cut(s)	160
AvaI	CYCGRG	1 cut(s)	437
AvaII	GGWCC	2 cut(s)	282, 620
BbvI	GCAGC	2 cut(s)	147, 466
BccI	CCATC	2 cut(s)	277, 637
BfaI	CTAG	1 cut(s)	811
BfmI	CTRYAG	1 cut(s)	483
BisI	GCNGC	2 cut(s)	161, 455
BlpI	GCTNAGC	1 cut(s)	238
BlsI	GCNGC	2 cut(s)	162, 456
Bme18I	GGWCC	2 cut(s)	282, 620
BmeT110I	CYCGRG	1 cut(s)	437
BmgT120I	GGNCC	3 cut(s)	282, 620, 770
BmiI	GGNNCC	2 cut(s)	283, 334
Bpu1102I	GCTNAGC	1 cut(s)	238
BpuEI	CTTGAG	1 cut(s)	559
BsaWI	WCCGGW	1 cut(s)	127
BsaXI	ACNNNNNCTCC	2 cut(s)	109, 139
Bsc4I	CCNNNNNNNGG	4 cut(s)	134, 471, 639, 730
Bse1I	ACTGG	4 cut(s)	220, 319, 610, 772
Bse3DI	GCAATG	1 cut(s)	650
BseAI	TCCGGA	1 cut(s)	127
BseGI	GGATG	1 cut(s)	629
BseLI	CCNNNNNNNGG	4 cut(s)	134, 471, 639, 730
BseMI	GCAATG	1 cut(s)	650
BseNI	ACTGG	4 cut(s)	220, 319, 610, 772
BseXI	GCAGC	2 cut(s)	147, 466
BsgI	GTGCAG	1 cut(s)	473
BshFI	GGCC	1 cut(s)	771
BsiHKCI	CYCGRG	1 cut(s)	437
BsiSI	CCGG	1 cut(s)	128
BslFI	GGGAC	1 cut(s)	120
BslI	CCNNNNNNNGG	4 cut(s)	134, 471, 639, 730
BsmFI	GGGAC	1 cut(s)	120
BsmI	GAATGC	1 cut(s)	582
BsnI	GGCC	1 cut(s)	771
BsoBI	CYCGRG	1 cut(s)	437
Bsp13I	TCCGGA	1 cut(s)	127
Bsp143I	GATC	2 cut(s)	3, 130
Bsp1720I	GCTNAGC	1 cut(s)	238
BspACI	CCGC	2 cut(s)	258, 543
BspANI	GGCC	1 cut(s)	771
BspEI	TCCGGA	1 cut(s)	127
BspLI	GGNNCC	2 cut(s)	283, 334
BspPI	GGATC	1 cut(s)	138
BsrBI	CCGCTC	1 cut(s)	543
BsrDI	GCAATG	1 cut(s)	650
BsrI	ACTGG	4 cut(s)	220, 319, 610, 772
BssMI	GATC	2 cut(s)	3, 130
BssNAI	GTATAC	1 cut(s)	698
Bst1107I	GTATAC	1 cut(s)	698
Bst4CI	ACNGT	1 cut(s)	179
BstDEI	CTNAG	2 cut(s)	238, 578
BstF5I	GGATG	1 cut(s)	629
BstHHI	GCGC	1 cut(s)	65
BstKTI	GATC	2 cut(s)	6, 133
BstMBI	GATC	2 cut(s)	3, 130
BstNSI	RCATGY	1 cut(s)	479
BstSFI	CTRYAG	1 cut(s)	483
BstV1I	GCAGC	2 cut(s)	147, 466
BstX2I	RGATCY	1 cut(s)	130
BstXI	CCANNNNNNTGG	1 cut(s)	617
BstYI	RGATCY	1 cut(s)	130
BstZ17I	GTATAC	1 cut(s)	698
BsuRI	GGCC	1 cut(s)	771
BtsCI	GGATG	1 cut(s)	629
BtsIMutI	CAGTG	1 cut(s)	694
CaiI	CAGNNNCTG	1 cut(s)	767
CfoI	GCGC	1 cut(s)	65
Cfr13I	GGNCC	3 cut(s)	282, 620, 770
Csp6I	GTAC	2 cut(s)	765, 807
CspCI	CAANNNNNGTGG	2 cut(s)	670, 705
CviAII	CATG	5 cut(s)	103, 185, 273, 476, 617
CviJI	RGCY	9 cut(s)	160, 209, 237, 252, 387, 436, 457, 488, 771
CviKI_1	RGCY	9 cut(s)	160, 209, 237, 252, 387, 436, 457, 488, 771
CviQI	GTAC	2 cut(s)	765, 807
DdeI	CTNAG	2 cut(s)	238, 578
DpnI	GATC	2 cut(s)	5, 132
DpnII	GATC	2 cut(s)	3, 130
DrdI	GACNNNNNNGTC	1 cut(s)	16
DseDI	GACNNNNNNGTC	1 cut(s)	16
Eco47I	GGWCC	2 cut(s)	282, 620
Eco57I	CTGAAG	3 cut(s)	58, 219, 644
Eco88I	CYCGRG	1 cut(s)	437
EcoO109I	RGGNCCY	1 cut(s)	282
FaeI	CATG	5 cut(s)	106, 188, 276, 479, 620
FaqI	GGGAC	1 cut(s)	120
FatI	CATG	5 cut(s)	102, 184, 272, 475, 616
FblI	GTMKAC	2 cut(s)	20, 697
Fnu4HI	GCNGC	2 cut(s)	161, 455
FokI	GGATG	1 cut(s)	616
Fsp4HI	GCNGC	2 cut(s)	161, 455
FspBI	CTAG	1 cut(s)	811
GlaI	GCGC	1 cut(s)	64
GluI	GCNGC	2 cut(s)	161, 455
HaeIII	GGCC	1 cut(s)	771
HapII	CCGG	1 cut(s)	128
HhaI	GCGC	1 cut(s)	65
Hin1II	CATG	5 cut(s)	106, 188, 276, 479, 620
Hin6I	GCGC	1 cut(s)	63
HinP1I	GCGC	1 cut(s)	63
HincII	GTYRAC	1 cut(s)	519
HindII	GTYRAC	1 cut(s)	519
HinfI	GANTC	4 cut(s)	108, 261, 430, 796
HpaII	CCGG	1 cut(s)	128
HphI	GGTGA	1 cut(s)	160
Hpy166II	GTNNAC	4 cut(s)	21, 519, 623, 698
Hpy188I	TCNGA	3 cut(s)	77, 403, 759
Hpy188III	TCNNGA	5 cut(s)	7, 88, 128, 336, 439
Hpy8I	GTNNAC	4 cut(s)	21, 519, 623, 698
HpyCH4III	ACNGT	1 cut(s)	179
HpyCH4IV	ACGT	2 cut(s)	302, 515
HpyCH4V	TGCA	6 cut(s)	39, 83, 217, 365, 454, 648
HpyF3I	CTNAG	2 cut(s)	238, 578
HpySE526I	ACGT	2 cut(s)	302, 515
Hsp92II	CATG	5 cut(s)	106, 188, 276, 479, 620
HspAI	GCGC	1 cut(s)	63
Kpn2I	TCCGGA	1 cut(s)	127
Kzo9I	GATC	2 cut(s)	3, 130
Lsp1109I	GCAGC	2 cut(s)	147, 466
MaeI	CTAG	1 cut(s)	811
MaeII	ACGT	2 cut(s)	302, 515
MaeIII	GTNAC	2 cut(s)	52, 188
MalI	GATC	2 cut(s)	5, 132
MbiI	CCGCTC	1 cut(s)	543
MboI	GATC	2 cut(s)	3, 130
MboII	GAAGA	5 cut(s)	212, 484, 495, 566, 650
MfeI	CAATTG	1 cut(s)	13
MflI	RGATCY	1 cut(s)	130
MluCI	AATT	8 cut(s)	13, 203, 307, 379, 405, 417, 460, 682
MlyI	GAGTC	2 cut(s)	102, 255
MmeI	TCCRAC	1 cut(s)	573
MnlI	CCTC	4 cut(s)	104, 135, 152, 352
MroI	TCCGGA	1 cut(s)	127
MseI	TTAA	3 cut(s)	224, 378, 719
MslI	CAYNNNNRTG	2 cut(s)	587, 634
MspI	CCGG	1 cut(s)	128
MunI	CAATTG	1 cut(s)	13
Mva1269I	GAATGC	1 cut(s)	582
NdeII	GATC	2 cut(s)	3, 130
NlaIII	CATG	5 cut(s)	106, 188, 276, 479, 620
NlaIV	GGNNCC	2 cut(s)	283, 334
NmuCI	GTSAC	1 cut(s)	188
NspI	RCATGY	1 cut(s)	479
PaeR7I	CTCGAG	1 cut(s)	437
PctI	GAATGC	1 cut(s)	582
PfeI	GAWTC	2 cut(s)	430, 796
PflMI	CCANNNNNTGG	1 cut(s)	639
PkrI	GCNGC	2 cut(s)	162, 456
PleI	GAGTC	2 cut(s)	102, 255
PpsI	GAGTC	2 cut(s)	102, 255
PpuMI	RGGWCCY	1 cut(s)	282
PshBI	ATTAAT	1 cut(s)	378
Psp1406I	AACGTT	1 cut(s)	302
Psp5II	RGGWCCY	1 cut(s)	282
PspN4I	GGNNCC	2 cut(s)	283, 334
PspPI	GGNCC	3 cut(s)	282, 620, 770
PspPPI	RGGWCCY	1 cut(s)	282
PsrI	GAACNNNNNNTAC	2 cut(s)	83, 115
PstNI	CAGNNNCTG	1 cut(s)	767
PsuI	RGATCY	1 cut(s)	130
RsaI	GTAC	2 cut(s)	766, 808
RsaNI	GTAC	2 cut(s)	765, 807
RseI	CAYNNNNRTG	2 cut(s)	587, 634
SaqAI	TTAA	3 cut(s)	224, 378, 719
SatI	GCNGC	2 cut(s)	161, 455
Sau3AI	GATC	2 cut(s)	3, 130
Sau96I	GGNCC	3 cut(s)	282, 620, 770
SchI	GAGTC	2 cut(s)	102, 255
SfcI	CTRYAG	1 cut(s)	483
Sfr274I	CTCGAG	1 cut(s)	437
SinI	GGWCC	2 cut(s)	282, 620
SlaI	CTCGAG	1 cut(s)	437
SmiMI	CAYNNNNRTG	2 cut(s)	587, 634
SmlI	CTYRAG	2 cut(s)	437, 538
SmoI	CTYRAG	2 cut(s)	437, 538
Sse9I	AATT	8 cut(s)	13, 203, 307, 379, 405, 417, 460, 682
SsiI	CCGC	2 cut(s)	258, 543
SspI	AATATT	1 cut(s)	709
SspMI	CTAG	1 cut(s)	811
TaaI	ACNGT	1 cut(s)	179
TaiI	ACGT	2 cut(s)	305, 518
TaqI	TCGA	2 cut(s)	438, 674
TasI	AATT	8 cut(s)	13, 203, 307, 379, 405, 417, 460, 682
TfiI	GAWTC	2 cut(s)	430, 796
Tru1I	TTAA	3 cut(s)	224, 378, 719
Tru9I	TTAA	3 cut(s)	224, 378, 719
TscAI	CASTG	1 cut(s)	694
TseFI	GTSAC	1 cut(s)	188
TseI	GCWGC	2 cut(s)	160, 454
Tsp45I	GTSAC	1 cut(s)	188
TspDTI	ATGAA	2 cut(s)	173, 605
TspRI	CASTG	1 cut(s)	694
Van91I	CCANNNNNTGG	1 cut(s)	639
VpaK11BI	GGWCC	2 cut(s)	282, 620
VspI	ATTAAT	1 cut(s)	378
XapI	RAATTY	1 cut(s)	405
XceI	RCATGY	1 cut(s)	479
XcmI	CCANNNNNNNNNTGG	1 cut(s)	636
XhoI	CTCGAG	1 cut(s)	437
XmiI	GTMKAC	2 cut(s)	20, 697
XspI	CTAG	1 cut(s)	811

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.