Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

34956934 .. 34958557

Gene Structure 1624 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033979

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGAGTAGCTTGATAGCCTTAGAAGTGAGATACAATCAATTAAATGGACCAATTCAAACTACAATAGGAAGCATAAAGAATCTCCAAGGGTTGTACTTGAATGGTAACCAACTGCAAGGACACATCCCTTATGAACTCTGTCAGCTAGAAAACCTTGTCGATTTACAATTAGGTGGTAATCAACTCTCCGGTTCTATACCTTCCTGTTTGGGAAATCTAGCCGCATCACTGAGAACTCTATCATTGAACTCCAATTTGTTAACTTCCACAATACCATCTACCTTAAGGAGACTCCAATATTTACATGGTTTATCATCCAATTCTCTAATTGGCCTTCTCTCATATGATATTGGTGATTTGAAAGTTGTGACAGATTTTGATTTATCAAGCAACCATTTATTTGGGATTATACCAGGAAGCATTGAGGGTCTTCAAGATTTGGTCAATCTCTCCTTGGCAAGTAACAATTTAGAAGGCCCTATTCCTACTTCATTTGGCAACATGCTAAGCCTGGAACTCTTGGATTTATCCCAAAACAATCTATCTGGGGAGATTCCAAAGTCTCTAGAAGCACTCTTGCACCTTAGCTATTTGAATCTATCTTTCAACAGACTCCACAGAGAAATTCCAACAGGCAACTTGCTTGGCAGTGGGGGATTTGGCTCGGTGTATAAAGGAACACTATCAGATGGGATAAATGTTGTGATAAAGAGATTGAGTATAATGATAGATGTTGCATCGGCATTGGAATACCTTCATCATGGTACTGAAATACCAATTGTCCATTGCGATTTGAAGCCCAGCAGTATACTGTTAGATGATGATATGCTTGGACATGTTGATGACTTTGGTATTGTAAAACTCTTGGGTGGAGGAGATTCCACAACTCAAACCATGATGCTAGCCACAATCGGATATATAGCTCCAGAGTATGGAACAGAAGAGGAGATGTGTACAGTTTTGGTGTTGTACTTATGGAAACTTTCACATAAAGGAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04016 ko04064 ko04620 ko04621 ko04624 ko04626 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04016 map04064 map04620 map04621 map04624 map04626 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

334

Amino Acids

35.91

Weight (kDa)

4.91

Isoelectric Point (pI)

29.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	95 - 207	2.2e-07	Leucine-rich repeat region
LRR_8	PF13855	147 - 205	2e-07	Leucine rich repeat
PK_Tyr_Ser-Thr	PF07714	237 - 315	2.7e-06	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	240 - 311	2.2e-11	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	932
AccI	GTMKAC	1 cut(s)	808
AciI	CCGC	1 cut(s)	222
AcsI	RAATTY	1 cut(s)	624
AfaI	GTAC	4 cut(s)	95, 766, 955, 971
AfiI	CCNNNNNNNGG	1 cut(s)	932
AflII	CTTAAG	1 cut(s)	283
AflIII	ACRYGT	1 cut(s)	835
AgsI	TTSAA	8 cut(s)	56, 100, 247, 361, 434, 595, 607, 796
AjnI	CCWGG	2 cut(s)	412, 510
AluBI	AGCT	5 cut(s)	9, 145, 588, 923, 999
AluI	AGCT	5 cut(s)	9, 145, 588, 923, 999
Alw26I	GTCTC	2 cut(s)	283, 567
AoxI	GGCC	2 cut(s)	331, 475
ApoI	RAATTY	1 cut(s)	624
Asp700I	GAANNNNTTC	1 cut(s)	753
AspS9I	GGNCC	2 cut(s)	47, 476
AsuHPI	GGTGA	1 cut(s)	365
AsuNHI	GCTAGC	1 cut(s)	901
AvaII	GGWCC	1 cut(s)	47
BbsI	GAAGAC	1 cut(s)	422
BccI	CCATC	2 cut(s)	283, 683
BciT130I	CCWGG	2 cut(s)	414, 512
BcoDI	GTCTC	2 cut(s)	283, 567
BfaI	CTAG	4 cut(s)	146, 218, 566, 902
BfrI	CTTAAG	1 cut(s)	283
BisI	GCNGC	1 cut(s)	222
BlpI	GCTNAGC	1 cut(s)	506
BlsI	GCNGC	1 cut(s)	223
Bme1390I	CCNGG	2 cut(s)	414, 512
Bme18I	GGWCC	1 cut(s)	47
BmgT120I	GGNCC	2 cut(s)	47, 476
BmrFI	CCNGG	2 cut(s)	414, 512
BmsI	GCATC	3 cut(s)	233, 746, 888
BmtI	GCTAGC	1 cut(s)	905
BpiI	GAAGAC	1 cut(s)	422
BpmI	CTGGAG	1 cut(s)	909
Bpu10I	CCTNAGC	1 cut(s)	584
Bpu1102I	GCTNAGC	1 cut(s)	506
BsaJI	CCNNGG	2 cut(s)	85, 453
BsaWI	WCCGGW	1 cut(s)	188
Bsc4I	CCNNNNNNNGG	1 cut(s)	932
Bse3DI	GCAATG	1 cut(s)	784
BseBI	CCWGG	2 cut(s)	414, 512
BseDI	CCNNGG	2 cut(s)	85, 453
BseGI	GGATG	2 cut(s)	123, 314
BseLI	CCNNNNNNNGG	1 cut(s)	932
BseMI	GCAATG	1 cut(s)	784
BseMII	CTCAG	1 cut(s)	221
BseRI	GAGGAG	2 cut(s)	888, 959
BseYI	CCCAGC	1 cut(s)	800
BshFI	GGCC	2 cut(s)	333, 477
BsiSI	CCGG	1 cut(s)	189
BslI	CCNNNNNNNGG	1 cut(s)	932
BsmAI	GTCTC	2 cut(s)	283, 567
BsnI	GGCC	2 cut(s)	333, 477
Bsp1407I	TGTACA	1 cut(s)	953
Bsp1720I	GCTNAGC	1 cut(s)	506
BspACI	CCGC	1 cut(s)	222
BspANI	GGCC	2 cut(s)	333, 477
BspCNI	CTCAG	1 cut(s)	222
BspOI	GCTAGC	1 cut(s)	905
BspTI	CTTAAG	1 cut(s)	283
BsrDI	GCAATG	1 cut(s)	784
BsrGI	TGTACA	1 cut(s)	953
BssECI	CCNNGG	2 cut(s)	85, 453
BssNAI	GTATAC	1 cut(s)	809
BssT1I	CCWWGG	2 cut(s)	85, 453
Bst1107I	GTATAC	1 cut(s)	809
Bst2UI	CCWGG	2 cut(s)	414, 512
Bst4CI	ACNGT	2 cut(s)	813, 958
Bst6I	CTCTTC	1 cut(s)	936
BstAFI	CTTAAG	1 cut(s)	283
BstAUI	TGTACA	1 cut(s)	953
BstC8I	GCNNGC	1 cut(s)	903
BstDEI	CTNAG	4 cut(s)	19, 230, 506, 584
BstEII	GGTNACC	1 cut(s)	104
BstF5I	GGATG	2 cut(s)	123, 314
BstMAI	GTCTC	2 cut(s)	283, 567
BstNI	CCWGG	2 cut(s)	414, 512
BstNSI	RCATGY	2 cut(s)	505, 839
BstPI	GGTNACC	1 cut(s)	104
BstSCI	CCNGG	2 cut(s)	412, 510
BstV2I	GAAGAC	1 cut(s)	422
BstXI	CCANNNNNNTGG	1 cut(s)	401
BstZ17I	GTATAC	1 cut(s)	809
BsuRI	GGCC	2 cut(s)	333, 477
BtsCI	GGATG	2 cut(s)	123, 314
BtsI	GCAGTG	1 cut(s)	655
BtsIMutI	CAGTG	2 cut(s)	227, 655
Cac8I	GCNNGC	1 cut(s)	903
Cfr13I	GGNCC	2 cut(s)	47, 476
Csp6I	GTAC	4 cut(s)	94, 765, 954, 970
CviAII	CATG	5 cut(s)	305, 502, 761, 836, 895
CviQI	GTAC	4 cut(s)	94, 765, 954, 970
DdeI	CTNAG	4 cut(s)	19, 230, 506, 584
Eam1104I	CTCTTC	1 cut(s)	936
EarI	CTCTTC	1 cut(s)	936
Eco130I	CCWWGG	2 cut(s)	85, 453
Eco47I	GGWCC	1 cut(s)	47
Eco91I	GGTNACC	1 cut(s)	104
EcoO109I	RGGNCCY	1 cut(s)	476
EcoO65I	GGTNACC	1 cut(s)	104
EcoRII	CCWGG	2 cut(s)	412, 510
EcoT14I	CCWWGG	2 cut(s)	85, 453
ErhI	CCWWGG	2 cut(s)	85, 453
FaeI	CATG	5 cut(s)	308, 505, 764, 839, 898
FatI	CATG	5 cut(s)	304, 501, 760, 835, 894
FauNDI	CATATG	1 cut(s)	343
FblI	GTMKAC	1 cut(s)	808
Fnu4HI	GCNGC	1 cut(s)	222
FokI	GGATG	2 cut(s)	110, 301
Fsp4HI	GCNGC	1 cut(s)	222
FspBI	CTAG	4 cut(s)	146, 218, 566, 902
GluI	GCNGC	1 cut(s)	222
GsaI	CCCAGC	1 cut(s)	804
GsuI	CTGGAG	1 cut(s)	909
HaeIII	GGCC	2 cut(s)	333, 477
HapII	CCGG	1 cut(s)	189
Hin1II	CATG	5 cut(s)	308, 505, 764, 839, 898
HincII	GTYRAC	1 cut(s)	261
HindII	GTYRAC	1 cut(s)	261
HinfI	GANTC	6 cut(s)	79, 291, 553, 595, 612, 878
HpaI	GTTAAC	1 cut(s)	261
HpaII	CCGG	1 cut(s)	189
HphI	GGTGA	1 cut(s)	365
Hpy166II	GTNNAC	3 cut(s)	261, 809, 954
Hpy188I	TCNGA	2 cut(s)	688, 914
Hpy188III	TCNNGA	3 cut(s)	434, 566, 926
Hpy8I	GTNNAC	3 cut(s)	261, 809, 954
HpyAV	CCTTC	4 cut(s)	210, 344, 467, 764
HpyCH4III	ACNGT	2 cut(s)	813, 958
HpyCH4V	TGCA	3 cut(s)	115, 580, 737
HpyF3I	CTNAG	4 cut(s)	19, 230, 506, 584
Hsp92II	CATG	5 cut(s)	308, 505, 764, 839, 898
KspAI	GTTAAC	1 cut(s)	261
LmnI	GCTCC	1 cut(s)	928
LweI	GCATC	3 cut(s)	233, 746, 888
MaeI	CTAG	4 cut(s)	146, 218, 566, 902
MaeIII	GTNAC	3 cut(s)	104, 367, 461
MboII	GAAGA	2 cut(s)	422, 953
MfeI	CAATTG	1 cut(s)	777
MluCI	AATT	9 cut(s)	38, 51, 167, 253, 319, 327, 466, 624, 777
MlyI	GAGTC	2 cut(s)	285, 606
MmeI	TCCRAC	1 cut(s)	653
MnlI	CCTC	3 cut(s)	418, 866, 937
MroXI	GAANNNNTTC	1 cut(s)	753
MseI	TTAA	3 cut(s)	41, 260, 284
MslI	CAYNNNNRTG	1 cut(s)	840
MspCI	CTTAAG	1 cut(s)	283
MspI	CCGG	1 cut(s)	189
MspR9I	CCNGG	2 cut(s)	414, 512
MunI	CAATTG	1 cut(s)	777
MvaI	CCWGG	2 cut(s)	414, 512
NdeI	CATATG	1 cut(s)	343
NheI	GCTAGC	1 cut(s)	901
NlaIII	CATG	5 cut(s)	308, 505, 764, 839, 898
NmuCI	GTSAC	1 cut(s)	367
NspI	RCATGY	2 cut(s)	505, 839
PciI	ACATGT	1 cut(s)	835
PdmI	GAANNNNTTC	1 cut(s)	753
PfeI	GAWTC	4 cut(s)	79, 553, 595, 878
PflMI	CCANNNNNTGG	1 cut(s)	932
PkrI	GCNGC	1 cut(s)	223
PleI	GAGTC	2 cut(s)	285, 606
PpsI	GAGTC	2 cut(s)	285, 606
PscI	ACATGT	1 cut(s)	835
Psp6I	CCWGG	2 cut(s)	412, 510
PspEI	GGTNACC	1 cut(s)	104
PspFI	CCCAGC	1 cut(s)	800
PspGI	CCWGG	2 cut(s)	412, 510
PspPI	GGNCC	2 cut(s)	47, 476
RsaI	GTAC	4 cut(s)	95, 766, 955, 971
RsaNI	GTAC	4 cut(s)	94, 765, 954, 970
RseI	CAYNNNNRTG	1 cut(s)	840
SaqAI	TTAA	3 cut(s)	41, 260, 284
SatI	GCNGC	1 cut(s)	222
Sau96I	GGNCC	2 cut(s)	47, 476
SchI	GAGTC	2 cut(s)	285, 606
ScrFI	CCNGG	2 cut(s)	414, 512
SfaNI	GCATC	3 cut(s)	233, 746, 888
SinI	GGWCC	1 cut(s)	47
SmiMI	CAYNNNNRTG	1 cut(s)	840
SmlI	CTYRAG	1 cut(s)	283
SmoI	CTYRAG	1 cut(s)	283
Sse9I	AATT	9 cut(s)	38, 51, 167, 253, 319, 327, 466, 624, 777
SsiI	CCGC	1 cut(s)	222
SspI	AATATT	1 cut(s)	299
SspMI	CTAG	4 cut(s)	146, 218, 566, 902
StyD4I	CCNGG	2 cut(s)	412, 510
StyI	CCWWGG	2 cut(s)	85, 453
TaaI	ACNGT	2 cut(s)	813, 958
TaqI	TCGA	1 cut(s)	159
TasI	AATT	9 cut(s)	38, 51, 167, 253, 319, 327, 466, 624, 777
TatI	WGTACW	3 cut(s)	93, 953, 969
TauI	GCSGC	1 cut(s)	224
TfiI	GAWTC	4 cut(s)	79, 553, 595, 878
Tru1I	TTAA	3 cut(s)	41, 260, 284
Tru9I	TTAA	3 cut(s)	41, 260, 284
TscAI	CASTG	2 cut(s)	234, 655
TseFI	GTSAC	1 cut(s)	367
Tsp45I	GTSAC	1 cut(s)	367
TspDTI	ATGAA	3 cut(s)	147, 480, 746
TspRI	CASTG	2 cut(s)	234, 655
Van91I	CCANNNNNTGG	1 cut(s)	932
Vha464I	CTTAAG	1 cut(s)	283
VpaK11BI	GGWCC	1 cut(s)	47
XapI	RAATTY	1 cut(s)	624
XbaI	TCTAGA	1 cut(s)	565
XceI	RCATGY	2 cut(s)	505, 839
XcmI	CCANNNNNNNNNTGG	1 cut(s)	302
XmiI	GTMKAC	1 cut(s)	808
XmnI	GAANNNNTTC	1 cut(s)	753
XspI	CTAG	4 cut(s)	146, 218, 566, 902

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.