RLG00000035465

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
N/A
Physical Location & Seq
Reverse (-)
67232966 .. 67233475
510 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035465

Sequence Viewer

Length: 510 bp
ATGGCCTCTGCATCACTTTCTACATCGGCTAAATCATCAACTCCTCGGTCGAAGTATGAGGTGTTTTTGAGTTTCAGGGGTAAAGACACTGGCCAGGGTTTTACTTCGTACTTATATAATGAATTACAAAACAGAGAAATCAACACATTCATGCATAGCTCCGAAGAGATTTTGTATAGAGGAGACTGGGTTCATCAAAGAATCCTAGAGGCAATTCAAGAATCAAGATTTGCAATAGTTGTTCTCTCGGTAAACTATGCTTTTTCTCATCGGTGTTTGGATGAACTCACACAGATTATGCAGTGCATGGAAATTAAGGGAACAATAATTCTACCAGTTTTCTATCTTGTGGATCCCTATAATGTACGTTCTCAAATGGGAGCATATGGAGAAGCCTTCGCTGAACATGAAATAAGGTTTAAAGATCAAAAAGAGAGGGTGATGAATTGGAGAGCCGCCTTGAGCAAAATCAGCGTCATCTCTGGCTGGCGGTTGAAGGCTTATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

170

Amino Acids

19.6

Weight (kDa)

7.78

Isoelectric Point (pI)

34.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 18 - 165 1.4e-40 TIR domain
TIR_2 PF13676 21 - 116 4.4e-12 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 456, 490
AclWI GGATC 2 cut(s) 347, 360
AcoI YGGCCR 1 cut(s) 91
AfaI GTAC 2 cut(s) 110, 366
AgsI TTSAA 2 cut(s) 218, 496
AjnI CCWGG 1 cut(s) 93
AloI GAACNNNNNNTCC 2 cut(s) 174, 206
AluBI AGCT 1 cut(s) 159
AluI AGCT 1 cut(s) 159
Alw26I GTCTC 1 cut(s) 177
AlwI GGATC 2 cut(s) 347, 360
AoxI GGCC 2 cut(s) 3, 91
ArsI GACNNNNNNTTYG 2 cut(s) 459, 491
AsuHPI GGTGA 1 cut(s) 451
BalI TGGCCA 1 cut(s) 93
BamHI GGATCC 1 cut(s) 352
BciT130I CCWGG 1 cut(s) 95
BcoDI GTCTC 1 cut(s) 177
BfaI CTAG 1 cut(s) 206
BisI GCNGC 1 cut(s) 456
BlsI GCNGC 1 cut(s) 457
Bme1390I CCNGG 1 cut(s) 95
BmiI GGNNCC 1 cut(s) 354
BmrFI CCNGG 1 cut(s) 95
BmrI ACTGGG 1 cut(s) 196
BmsI GCATC 1 cut(s) 20
BmuI ACTGGG 1 cut(s) 196
BpuEI CTTGAG 1 cut(s) 481
BsaJI CCNNGG 2 cut(s) 44, 94
BsaXI ACNNNNNCTCC 2 cut(s) 174, 204
Bse1I ACTGG 3 cut(s) 94, 191, 335
BseBI CCWGG 1 cut(s) 95
BseDI CCNNGG 2 cut(s) 44, 94
BseGI GGATG 1 cut(s) 286
BseNI ACTGG 3 cut(s) 94, 191, 335
BseRI GAGGAG 2 cut(s) 33, 195
Bsh1285I CGRYCG 1 cut(s) 50
BshFI GGCC 2 cut(s) 5, 93
BsiEI CGRYCG 1 cut(s) 50
BsmAI GTCTC 1 cut(s) 177
BsnI GGCC 2 cut(s) 5, 93
Bsp143I GATC 2 cut(s) 352, 424
BspACI CCGC 2 cut(s) 456, 490
BspANI GGCC 2 cut(s) 5, 93
BspLI GGNNCC 1 cut(s) 354
BspPI GGATC 2 cut(s) 347, 360
BsrI ACTGG 3 cut(s) 94, 191, 335
BssECI CCNNGG 2 cut(s) 44, 94
BssMI GATC 2 cut(s) 352, 424
Bst2UI CCWGG 1 cut(s) 95
Bst6I CTCTTC 1 cut(s) 159
BstC8I GCNNGC 1 cut(s) 488
BstF5I GGATG 1 cut(s) 286
BstKTI GATC 2 cut(s) 355, 427
BstMAI GTCTC 1 cut(s) 177
BstMBI GATC 2 cut(s) 352, 424
BstMCI CGRYCG 1 cut(s) 50
BstMWI GCNNNNNNNGC 1 cut(s) 471
BstNI CCWGG 1 cut(s) 95
BstSCI CCNGG 1 cut(s) 93
BstX2I RGATCY 1 cut(s) 352
BstYI RGATCY 1 cut(s) 352
BsuRI GGCC 2 cut(s) 5, 93
BtsCI GGATG 1 cut(s) 286
BtsI GCAGTG 1 cut(s) 308
BtsIMutI CAGTG 2 cut(s) 87, 308
Cac8I GCNNGC 1 cut(s) 488
CseI GACGC 1 cut(s) 463
Csp6I GTAC 2 cut(s) 109, 365
CviAII CATG 3 cut(s) 151, 307, 407
CviJI RGCY 8 cut(s) 5, 29, 93, 159, 395, 455, 486, 500
CviKI_1 RGCY 8 cut(s) 5, 29, 93, 159, 395, 455, 486, 500
CviQI GTAC 2 cut(s) 109, 365
DpnI GATC 2 cut(s) 354, 426
DpnII GATC 2 cut(s) 352, 424
DraI TTTAAA 1 cut(s) 421
EaeI YGGCCR 1 cut(s) 91
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
EcoRII CCWGG 1 cut(s) 93
EcoT22I ATGCAT 1 cut(s) 156
FaeI CATG 3 cut(s) 154, 310, 410
FatI CATG 3 cut(s) 150, 306, 406
FauNDI CATATG 1 cut(s) 385
Fnu4HI GCNGC 1 cut(s) 456
FokI GGATG 1 cut(s) 293
Fsp4HI GCNGC 1 cut(s) 456
FspBI CTAG 1 cut(s) 206
GluI GCNGC 1 cut(s) 456
HaeIII GGCC 2 cut(s) 5, 93
HgaI GACGC 1 cut(s) 463
Hin1II CATG 3 cut(s) 154, 310, 410
HinfI GANTC 2 cut(s) 201, 221
HphI GGTGA 1 cut(s) 451
Hpy166II GTNNAC 1 cut(s) 253
Hpy188I TCNGA 1 cut(s) 163
Hpy188III TCNNGA 2 cut(s) 218, 225
Hpy8I GTNNAC 1 cut(s) 253
HpyAV CCTTC 2 cut(s) 406, 490
HpyCH4IV ACGT 1 cut(s) 367
HpyCH4V TGCA 5 cut(s) 11, 154, 233, 301, 306
HpyF10VI GCNNNNNNNGC 1 cut(s) 471
HpySE526I ACGT 1 cut(s) 367
Hsp92II CATG 3 cut(s) 154, 310, 410
Kzo9I GATC 2 cut(s) 352, 424
LmnI GCTCC 2 cut(s) 164, 380
LpnPI CCDG 8 cut(s) 61, 75, 80, 107, 172, 348, 468, 472
LweI GCATC 1 cut(s) 20
MaeI CTAG 1 cut(s) 206
MaeII ACGT 1 cut(s) 367
MalI GATC 2 cut(s) 354, 426
MboI GATC 2 cut(s) 352, 424
MboII GAAGA 1 cut(s) 176
MflI RGATCY 1 cut(s) 352
MlsI TGGCCA 1 cut(s) 93
MluCI AATT 5 cut(s) 122, 213, 312, 327, 445
MluNI TGGCCA 1 cut(s) 93
MnlI CCTC 6 cut(s) 16, 52, 54, 173, 202, 429
Mox20I TGGCCA 1 cut(s) 93
Mph1103I ATGCAT 1 cut(s) 156
MscI TGGCCA 1 cut(s) 93
MseI TTAA 2 cut(s) 315, 420
MslI CAYNNNNRTG 1 cut(s) 149
Msp20I TGGCCA 1 cut(s) 93
MspR9I CCNGG 1 cut(s) 95
MvaI CCWGG 1 cut(s) 95
MwoI GCNNNNNNNGC 1 cut(s) 471
NdeI CATATG 1 cut(s) 385
NdeII GATC 2 cut(s) 352, 424
NlaIII CATG 3 cut(s) 154, 310, 410
NlaIV GGNNCC 1 cut(s) 354
NsiI ATGCAT 1 cut(s) 156
PfeI GAWTC 2 cut(s) 201, 221
PkrI GCNGC 1 cut(s) 457
Psp6I CCWGG 1 cut(s) 93
PspGI CCWGG 1 cut(s) 93
PspN4I GGNNCC 1 cut(s) 354
PsuI RGATCY 1 cut(s) 352
RsaI GTAC 2 cut(s) 110, 366
RsaNI GTAC 2 cut(s) 109, 365
RseI CAYNNNNRTG 1 cut(s) 149
SaqAI TTAA 2 cut(s) 315, 420
SatI GCNGC 1 cut(s) 456
Sau3AI GATC 2 cut(s) 352, 424
ScrFI CCNGG 1 cut(s) 95
SetI ASST 4 cut(s) 63, 161, 370, 419
SfaNI GCATC 1 cut(s) 20
SmiMI CAYNNNNRTG 1 cut(s) 149
SmlI CTYRAG 1 cut(s) 460
SmoI CTYRAG 1 cut(s) 460
Sse9I AATT 5 cut(s) 122, 213, 312, 327, 445
SsiI CCGC 2 cut(s) 456, 490
SspMI CTAG 1 cut(s) 206
StyD4I CCNGG 1 cut(s) 93
TaiI ACGT 1 cut(s) 370
TaqI TCGA 1 cut(s) 50
TaqII GACCGA 1 cut(s) 36
TasI AATT 5 cut(s) 122, 213, 312, 327, 445
TauI GCSGC 1 cut(s) 458
TfiI GAWTC 2 cut(s) 201, 221
Tru1I TTAA 2 cut(s) 315, 420
Tru9I TTAA 2 cut(s) 315, 420
TscAI CASTG 2 cut(s) 94, 308
TspDTI ATGAA 6 cut(s) 135, 139, 182, 297, 423, 458
TspRI CASTG 2 cut(s) 94, 308
XspI CTAG 1 cut(s) 206
Zsp2I ATGCAT 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.